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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    154801 7l3l:B (2.8) BS01 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 33539883
    154802 7l3l:B (2.8) BS02 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 33539883
    154803 7l3l:B (2.8) BS03 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 33539883
    154804 7l3l:C (2.8) BS01 ZN ? GO:0005164 ... O00463 33539883
    154805 7l3l:C (2.8) BS02 ZN ? GO:0005164 ... O00463 33539883
    154806 7l3l:C (2.8) BS03 ZN ? GO:0005164 ... O00463 33539883
    154807 7l3l:C (2.8) BS04 ZN ? GO:0005164 ... O00463 33539883
    154808 7l3l:D (2.8) BS01 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 33539883
    154809 7l3l:D (2.8) BS02 ZN 2.3.2.27 GO:0004842 ... Q9Y4K3 33539883
    154810 7l3m:A (2.07) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 34584739
    154811 7l3m:A (2.07) BS04 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 34584739
    154812 7l3o:A (2.1) BS01 ZN 6.1.1.3 GO:0000166 ... Q5CYN0 N/A
    154813 7l3o:B (2.1) BS01 ZN 6.1.1.3 GO:0000166 ... Q5CYN0 N/A
    154814 7l3o:C (2.1) BS01 ZN 6.1.1.3 GO:0000166 ... Q5CYN0 N/A
    154815 7l3o:D (2.1) BS01 ZN 6.1.1.3 GO:0000166 ... Q5CYN0 N/A
    154816 7l3v:A (1.98) BS03 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 34584739
    154817 7l3v:A (1.98) BS04 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 34584739
    154818 7l3v:A (1.98) BS05 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 34584739
    154819 7l48:A (3.9) BS02 ZN N/A N/A N/A 33764415
    154820 7l48:A (3.9) BS03 ZN N/A N/A N/A 33764415
    154821 7l48:B (3.9) BS02 ZN N/A N/A N/A 33764415
    154822 7l48:B (3.9) BS03 ZN N/A N/A N/A 33764415
    154823 7l49:A (3.1) BS05 ZN N/A N/A N/A 33764415
    154824 7l4i:A (2.58) BS01 MG 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    154825 7l4i:A (2.58) BS02 MG 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    154826 7l4i:B (2.58) BS01 MG 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    154827 7l4i:B (2.58) BS02 MG 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    154828 7l4j:A (2.451) BS01 MG 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    154829 7l4j:A (2.451) BS02 MG 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    154830 7l4j:B (2.451) BS01 MG 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    154831 7l4j:B (2.451) BS02 MG 3.1.3.16 GO:0004722 ... Q9ULR3 34580980
    154832 7l52:A (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 N/A
    154833 7l52:A (1.85) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 N/A
    154834 7l5c:A (2.55) BS01 CU1 ? GO:0005515 ... Q9Y316 38640016
    154835 7l5c:B (2.55) BS01 CU1 ? GO:0005515 ... Q9Y316 38640016
    154836 7l5c:C (2.55) BS01 CU1 ? GO:0005515 ... Q9Y316 38640016
    154837 7l5e:A (1.944) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    154838 7l5f:A (1.51) BS01 CO 3.1.1.81 GO:0016787 ... P0CJ63 34095651
    154839 7l5f:A (1.51) BS02 CO 3.1.1.81 GO:0016787 ... P0CJ63 34095651
    154840 7l61:A (1.35) BS02 CA ? N/A P22897 33545173
    154841 7l62:A (1.55) BS02 CA ? N/A P22897 33545173
    154842 7l63:A (1.65) BS02 CA ? N/A P22897 33545173
    154843 7l64:A (1.35) BS03 CA ? N/A P22897 33545173
    154844 7l64:A (1.35) BS04 CA ? N/A P22897 33545173
    154845 7l65:A (1.35) BS01 CA ? N/A P22897 33545173
    154846 7l66:A (1.75) BS01 CA ? N/A P22897 33545173
    154847 7l67:A (1.2) BS02 CA ? N/A P22897 33545173
    154848 7l68:A (1.4) BS01 CA ? N/A P22897 33545173
    154849 7l68:B (1.4) BS01 CA ? N/A P22897 33545173
    154850 7l6g:A (2.04) BS01 CU ? GO:0046872 ... A0A2D2CY67 34074779
    154851 7l6g:A (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    154852 7l6g:B (2.04) BS01 CU ? GO:0046872 ... A0A2D2CY67 34074779
    154853 7l6g:B (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    154854 7l6g:C (2.04) BS01 CU ? GO:0046872 ... A0A2D2CY67 34074779
    154855 7l6g:C (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    154856 7l6g:D (2.04) BS01 CU ? GO:0046872 ... A0A2D2CY67 34074779
    154857 7l6g:D (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    154858 7l6g:E (2.04) BS01 CU ? GO:0046872 ... A0A2D2CY67 34074779
    154859 7l6g:E (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    154860 7l6g:F (2.04) BS01 CU ? GO:0046872 ... A0A2D2CY67 34074779
    154861 7l6g:F (2.04) BS02 CA ? GO:0046872 ... A0A2D2CY67 34074779
    154862 7l6r:B (1.98) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 34131072
    154863 7l6t:B (1.78) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 34131072
    154864 7l6t:B (1.78) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 34131072
    154865 7l6v:A (2.01) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 34990480
    154866 7l76:B (1.83) BS01 CU ? GO:0003756 ... P0AEG4 34364222
    154867 7l79:B (2.826) BS01 ZN N/A N/A N/A N/A
    154868 7l79:B (2.826) BS02 ZN N/A N/A N/A N/A
    154869 7l79:H (2.826) BS01 ZN N/A N/A N/A N/A
    154870 7l79:L (2.826) BS01 ZN N/A N/A N/A N/A
    154871 7l79:L (2.826) BS02 ZN N/A N/A N/A N/A
    154872 7l7b:D (3.26) BS01 ZN 2.7.7.6 GO:0000287 ... Q18CF3 35388215
    154873 7l7b:D (3.26) BS02 ZN 2.7.7.6 GO:0000287 ... Q18CF3 35388215
    154874 7l7b:D (3.26) BS03 MG 2.7.7.6 GO:0000287 ... Q18CF3 35388215
    154875 7l7c:B (1.8) BS02 CU ? GO:0003756 ... P0AEG4 34364222
    154876 7l7l:A (1.88) BS01 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 34405680
    154877 7l7n:A (1.59) BS01 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 34405680
    154878 7l7o:A (1.72) BS01 ZN 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0006508 ... A8DG50 34405680
    154879 7l7p:A (1.58) BS01 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 34405680
    154880 7l8p:A (2.34995) BS01 CA ? GO:0007155 ... P08514 36113427
    154881 7l8p:A (2.34995) BS02 CA ? GO:0007155 ... P08514 36113427
    154882 7l8p:A (2.34995) BS03 CA ? GO:0007155 ... P08514 36113427
    154883 7l8p:A (2.34995) BS04 CA ? GO:0007155 ... P08514 36113427
    154884 7l8p:B (2.34995) BS01 MG ? N/A P05106 36113427
    154885 7l8p:B (2.34995) BS02 CA ? N/A P05106 36113427
    154886 7l8p:B (2.34995) BS03 CA ? N/A P05106 36113427
    154887 7l8p:C (2.34995) BS01 CA ? GO:0007155 ... P08514 36113427
    154888 7l8p:C (2.34995) BS02 CA ? GO:0007155 ... P08514 36113427
    154889 7l8p:C (2.34995) BS03 CA ? GO:0007155 ... P08514 36113427
    154890 7l8p:C (2.34995) BS04 CA ? GO:0007155 ... P08514 36113427
    154891 7l8p:D (2.34995) BS02 MG ? N/A P05106 36113427
    154892 7l8p:D (2.34995) BS03 CA ? N/A P05106 36113427
    154893 7l8p:D (2.34995) BS04 CA ? N/A P05106 36113427
    154894 7l8v:A (-1.00) BS02 CA ? GO:0000086 ... P0DP23 36395884
    154895 7l8v:A (-1.00) BS03 CA ? GO:0000086 ... P0DP23 36395884
    154896 7l91:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    154897 7l91:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    154898 7l92:A (1.75) BS01 ZN 2.7.11.13 N/A P09215 35577811
    154899 7l92:A (1.75) BS02 ZN 2.7.11.13 N/A P09215 35577811
    154900 7l92:D (1.75) BS01 ZN 2.7.11.13 N/A P09215 35577811
    154901 7l92:D (1.75) BS02 ZN 2.7.11.13 N/A P09215 35577811
    154902 7l92:G (1.75) BS01 ZN 2.7.11.13 N/A P09215 35577811
    154903 7l92:G (1.75) BS02 ZN 2.7.11.13 N/A P09215 35577811
    154904 7l92:J (1.75) BS01 ZN 2.7.11.13 N/A P09215 35577811
    154905 7l92:J (1.75) BS02 ZN 2.7.11.13 N/A P09215 35577811
    154906 7l92:M (1.75) BS01 ZN 2.7.11.13 N/A P09215 35577811
    154907 7l92:M (1.75) BS02 ZN 2.7.11.13 N/A P09215 35577811
    154908 7l92:P (1.75) BS01 ZN 2.7.11.13 N/A P09215 35577811
    154909 7l92:P (1.75) BS02 ZN 2.7.11.13 N/A P09215 35577811
    154910 7l92:S (1.75) BS01 ZN 2.7.11.13 N/A P09215 35577811
    154911 7l92:S (1.75) BS02 ZN 2.7.11.13 N/A P09215 35577811
    154912 7l92:V (1.75) BS02 ZN 2.7.11.13 N/A P09215 35577811
    154913 7l92:V (1.75) BS03 ZN 2.7.11.13 N/A P09215 35577811
    154914 7l97:A (2.01) BS01 ZN 3.4.19.- GO:0008233 ... Q96FJ0 34425109
    154915 7l97:A (2.01) BS02 ZN 3.4.19.- GO:0008233 ... Q96FJ0 34425109
    154916 7l9e:B (2.29) BS01 CA ? N/A O08795 34870992
    154917 7l9e:B (2.29) BS02 CA ? N/A O08795 34870992
    154918 7l9e:D (2.29) BS01 CA ? N/A O08795 34870992
    154919 7l9e:D (2.29) BS02 CA ? N/A O08795 34870992
    154920 7l9f:A (1.75) BS02 CA 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154921 7l9f:A (1.75) BS03 CA 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154922 7l9f:B (1.75) BS02 CA 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154923 7l9f:B (1.75) BS03 CA 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154924 7l9f:C (1.75) BS02 CA 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154925 7l9f:C (1.75) BS03 CA 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154926 7l9f:D (1.75) BS02 CA 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154927 7l9f:D (1.75) BS03 CA 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154928 7l9h:A (1.85) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154929 7l9h:B (1.85) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154930 7l9h:C (1.85) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154931 7l9h:D (1.85) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154932 7l9i:A (1.8) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154933 7l9i:B (1.8) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154934 7l9i:C (1.8) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154935 7l9i:D (1.8) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-
    GO:0000287 ... Q9NX46 33894202
    154936 7la4:A (3.3) BS01 CA ? GO:0007155 ... P08514 33760023
    154937 7la4:A (3.3) BS02 CA ? GO:0007155 ... P08514 33760023
    154938 7la4:A (3.3) BS03 CA ? GO:0007155 ... P08514 33760023
    154939 7la4:A (3.3) BS04 CA ? GO:0007155 ... P08514 33760023
    154940 7la4:B (3.3) BS01 MG ? N/A P05106 33760023
    154941 7la4:B (3.3) BS02 CA ? N/A P05106 33760023
    154942 7la4:B (3.3) BS03 CA ? N/A P05106 33760023
    154943 7lae:B (2.97) BS04 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154944 7lae:E (2.97) BS04 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154945 7laf:A (2.44) BS01 MN 1.13.11.-
    1.13.11.33
    GO:0001676 ... O15296 34500187
    154946 7laf:B (2.44) BS02 MN 1.13.11.-
    1.13.11.33
    GO:0001676 ... O15296 34500187
    154947 7lag:B (2.85) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154948 7lag:E (2.85) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154949 7lag:G (2.85) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154950 7lag:I (2.85) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154951 7lal:B (2.75) BS04 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154952 7lal:E (2.75) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154953 7lan:B (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154954 7lan:E (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154955 7lan:G (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154956 7lan:I (2.28) BS03 CA 1.11.2.2 GO:0004601 ... P05164 33811992
    154957 7lar:B (3.8) BS03 MG 3.6.4.- GO:0000166 ... Q6TC59 34311576
    154958 7lar:C (3.8) BS03 MG 3.6.4.- GO:0000166 ... Q6TC59 34311576
    154959 7las:B (4.4) BS03 MG 3.6.4.- GO:0000166 ... Q6TC59 34311576
    154960 7las:C (4.4) BS03 MG 3.6.4.- GO:0000166 ... Q6TC59 34311576
    154961 7lat:A (2.47) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    154962 7lba:A (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154963 7lba:A (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154964 7lba:B (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154965 7lba:B (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154966 7lba:C (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154967 7lba:C (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154968 7lba:D (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154969 7lba:D (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154970 7lba:E (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154971 7lba:E (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154972 7lba:F (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154973 7lba:F (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154974 7lba:G (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154975 7lba:G (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154976 7lba:H (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154977 7lba:H (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154978 7lba:I (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154979 7lba:I (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154980 7lba:J (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154981 7lba:J (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154982 7lba:K (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154983 7lba:K (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154984 7lba:L (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154985 7lba:L (2.2) BS02 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154986 7lba:M (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154987 7lba:P (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154988 7lba:Q (2.2) BS01 MN 3.5.3.11 GO:0005829 ... P60651 33857156
    154989 7lbk:A (2.7) BS02 ZN ? GO:0000228 ... O15392 35653296
    154990 7lbk:B (2.7) BS02 ZN ? GO:0000228 ... O15392 35653296
    154991 7lbm:A (4.8) BS01 MG 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000287 ... P24928 33707221
    154992 7lbm:A (4.8) BS02 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000287 ... P24928 33707221
    154993 7lbm:A (4.8) BS03 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000287 ... P24928 33707221
    154994 7lbm:A (4.8) BS04 MG 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000287 ... P24928 33707221
    154995 7lbm:B (4.8) BS01 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-
    GO:0000428 ... P30876 33707221
    154996 7lbm:C (4.8) BS01 ZN ? GO:0000428 ... P19387 33707221
    154997 7lbm:I (4.8) BS01 ZN ? GO:0000428 ... P36954 33707221
    154998 7lbm:I (4.8) BS02 ZN ? GO:0000428 ... P36954 33707221
    154999 7lbm:J (4.8) BS01 ZN ? GO:0000428 ... P62875 33707221
    155000 7lbm:L (4.8) BS01 ZN ? GO:0000428 ... P53803 33707221

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218