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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    154601 7ku7:E (3.4) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P03354 33712691
    154602 7ku7:E (3.4) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P03354 33712691
    154603 7ku7:E (3.4) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P03354 33712691
    154604 7kui:A (3.4) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P03354 33712691
    154605 7kui:E (3.4) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P03354 33712691
    154606 7kuq:A (2.1) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 33449614
    154607 7kur:A (2.1) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 33449614
    154608 7kus:A (2.0) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 33449614
    154609 7kut:A (2.05) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 33449614
    154610 7kuv:A (2.15) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 33449614
    154611 7kuz:A (2.25) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154612 7kuz:B (2.25) BS03 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154613 7kuz:C (2.25) BS03 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154614 7kuz:D (2.25) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154615 7kuz:E (2.25) BS03 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154616 7kuz:F (2.25) BS03 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154617 7kuz:F (2.25) BS04 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154618 7kw6:A (1.68) BS07 CA ? GO:0003824 ... Q65JI8 33910709
    154619 7kw7:C (3.57) BS02 MG ? GO:0000122 ... P0DMV8 34937942
    154620 7kw7:D (3.57) BS02 MG ? GO:0000122 ... P0DMV8 34937942
    154621 7kwd:A (2.1) BS01 MG ? GO:0004035 ... Q53W95 33781823
    154622 7kwd:A (2.1) BS02 ZN ? GO:0004035 ... Q53W95 33781823
    154623 7kwd:A (2.1) BS03 ZN ? GO:0004035 ... Q53W95 33781823
    154624 7kwd:B (2.1) BS01 MG ? GO:0004035 ... Q53W95 33781823
    154625 7kwd:B (2.1) BS02 ZN ? GO:0004035 ... Q53W95 33781823
    154626 7kwd:B (2.1) BS03 ZN ? GO:0004035 ... Q53W95 33781823
    154627 7kwe:A (2.0) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154628 7kwe:B (2.0) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154629 7kwe:C (2.0) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154630 7kwe:D (2.0) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154631 7kwn:B (2.24) BS01 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154632 7kwo:A (2.9) BS01 CA ? GO:0005507 ... P00451 33569592
    154633 7kwo:A (2.9) BS02 ZN ? GO:0005507 ... P00451 33569592
    154634 7kwo:A (2.9) BS03 CU ? GO:0005507 ... P00451 33569592
    154635 7kwo:V (2.9) BS01 CA ? N/A P01857
    P04275
    33569592
    154636 7kwp:B (2.26) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154637 7kwp:C (2.26) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154638 7kwu:A (2.02) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 33734714
    154639 7kx1:A (2.04) BS01 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154640 7kx9:A (3.5) BS03 MG ? GO:0003676 ... D5MRY8 34471284
    154641 7kx9:A (3.5) BS04 MG ? GO:0003676 ... D5MRY8 34471284
    154642 7kxg:A (2.28) BS01 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154643 7kxg:A (2.28) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154644 7kxg:B (2.28) BS01 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154645 7kxg:C (2.28) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154646 7kxg:C (2.28) BS03 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154647 7kxg:C (2.28) BS04 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154648 7kxg:D (2.28) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154649 7kxg:E (2.28) BS01 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154650 7kxh:A (1.94) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154651 7kxh:C (1.94) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154652 7kxh:D (1.94) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154653 7kxh:D (1.94) BS03 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154654 7kxh:F (1.94) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154655 7kxr:A (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    154656 7kxr:A (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    154657 7kxr:B (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    154658 7kxr:B (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    154659 7kxr:C (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    154660 7kxr:C (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    154661 7kxr:D (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    154662 7kxr:D (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    154663 7kxr:E (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    154664 7kxr:E (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    154665 7kxr:F (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    154666 7kxr:F (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    154667 7kxr:G (3.3) BS01 CA ? GO:0005576 ... P13423 34158520
    154668 7kxr:G (3.3) BS02 CA ? GO:0005576 ... P13423 34158520
    154669 7kxs:A (2.6) BS01 ZN 2.7.7.86 N/A Q8C6L5 36593311
    154670 7kxs:B (2.6) BS01 ZN 2.7.7.86 N/A Q8C6L5 36593311
    154671 7ky2:A (2.78) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 33603978
    154672 7ky2:B (2.78) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 33603978
    154673 7ky5:A (3.98) BS02 MG 7.6.2.1 GO:0000166 ... Q12675 33320091
    154674 7ky6:A (3.1) BS01 MG 7.6.2.1 GO:0000166 ... P32660 33320091
    154675 7ky7:A (3.08) BS01 MG 7.6.2.1 GO:0000166 ... Q12675 33320091
    154676 7ky8:A (3.85) BS03 MG 7.6.2.1 GO:0000166 ... Q12675 33320091
    154677 7ky9:A (4.05) BS02 MG 7.6.2.1 GO:0000166 ... Q12675 33320091
    154678 7kya:A (3.5) BS02 MG 7.6.2.1 GO:0000166 ... Q12675 33320091
    154679 7kyb:A (3.2) BS03 MG 7.6.2.1 GO:0000166 ... P32660 33320091
    154680 7kyc:A (2.8) BS02 MG 7.6.2.1 GO:0000166 ... P32660 33320091
    154681 7kyf:C (2.33) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI0 33603978
    154682 7kyh:A (2.91) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI0 33603978
    154683 7kyh:B (2.91) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI0 33603978
    154684 7kyh:C (2.91) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI0 33603978
    154685 7kyh:D (2.91) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI0 33603978
    154686 7kz2:C (1.9) BS02 MG 4.3.3.7 GO:0005737 ... Q9PPB4 N/A
    154687 7kz3:D (1.55) BS01 NA 2.6.1.1 GO:0000271 ... C0JRF5 33984505
    154688 7kz4:A (1.75) BS03 MG 1.3.5.2 GO:0004152 ... Q08210 33876936
    154689 7kz7:A (1.8) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPK1 33602850
    154690 7kze:A (2.9) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 35676292
    154691 7kze:B (2.9) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 35676292
    154692 7kze:C (2.9) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 35676292
    154693 7kzh:A (2.49) BS01 ZN ? N/A Q7Z2W4 35130321
    154694 7kzp:G (3.1) BS01 ZN ? GO:0000785 ... O15287 33686268
    154695 7kzp:L (3.1) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154696 7kzp:L (3.1) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154697 7kzq:G (4.3) BS01 ZN ? GO:0000785 ... O15287 33686268
    154698 7kzq:L (4.3) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154699 7kzq:L (4.3) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154700 7kzq:M (4.3) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154701 7kzq:M (4.3) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154702 7kzr:G (4.4) BS01 ZN ? GO:0000785 ... O15287 33686268
    154703 7kzr:L (4.4) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154704 7kzr:L (4.4) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154705 7kzr:M (4.4) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154706 7kzr:M (4.4) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154707 7kzs:G (4.2) BS01 ZN ? GO:0000785 ... O15287 33686268
    154708 7kzs:L (4.2) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154709 7kzs:L (4.2) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154710 7kzs:M (4.2) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154711 7kzs:M (4.2) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154712 7kzt:G (4.2) BS01 ZN ? GO:0000785 ... O15287 33686268
    154713 7kzt:L (4.2) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154714 7kzt:L (4.2) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154715 7kzt:M (4.2) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154716 7kzt:M (4.2) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154717 7kzv:G (4.2) BS01 ZN ? GO:0000785 ... O15287 33686268
    154718 7kzv:L (4.2) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154719 7kzv:L (4.2) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154720 7kzv:M (4.2) BS01 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154721 7kzv:M (4.2) BS02 ZN 2.3.2.27 GO:0000785 ... Q9NW38 33686268
    154722 7kzz:A (3.42) BS01 ZN ? GO:0005886 ... Q8E919 34254979
    154723 7kzz:A (3.42) BS02 ZN ? GO:0005886 ... Q8E919 34254979
    154724 7kzz:A (3.42) BS03 ZN ? GO:0005886 ... Q8E919 34254979
    154725 7kzz:A (3.42) BS04 ZN ? GO:0005886 ... Q8E919 34254979
    154726 7kzz:A (3.42) BS05 ZN ? GO:0005886 ... Q8E919 34254979
    154727 7kzz:B (3.42) BS01 ZN ? GO:0005886 ... Q8E919 34254979
    154728 7kzz:B (3.42) BS02 ZN ? GO:0005886 ... Q8E919 34254979
    154729 7kzz:B (3.42) BS03 ZN ? GO:0005886 ... Q8E919 34254979
    154730 7kzz:B (3.42) BS04 ZN ? GO:0005886 ... Q8E919 34254979
    154731 7kzz:B (3.42) BS05 ZN ? GO:0005886 ... Q8E919 34254979
    154732 7l05:A (2.21) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34315762
    154733 7l05:C (2.21) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 34315762
    154734 7l05:F (2.21) BS01 MG N/A GO:0036211 ... N/A 34315762
    154735 7l08:0 (3.49) BS02 ZN ? GO:0003723 ... Q9BYC8 34127662
    154736 7l08:4 (3.49) BS02 ZN ? GO:0003735 ... Q9P0J6 34127662
    154737 7l08:AB (3.49) BS02 ZN ? GO:0003735 ... Q9Y399 34127662
    154738 7l08:AO (3.49) BS02 ZN ? GO:0003735 ... Q9Y676 34127662
    154739 7l08:AT (3.49) BS02 ZN ? GO:0003735 ... P82663 34127662
    154740 7l0a:A (1.6) BS01 MG 3.1.2.12 GO:0005829 ... Q2FUY3 34279224
    154741 7l0a:B (1.6) BS01 MG 3.1.2.12 GO:0005829 ... Q2FUY3 34279224
    154742 7l0a:B (1.6) BS02 MG 3.1.2.12 GO:0005829 ... Q2FUY3 34279224
    154743 7l0b:A (1.65) BS01 ZN N/A N/A N/A 34279224
    154744 7l0b:A (1.65) BS02 ZN N/A N/A N/A 34279224
    154745 7l0b:B (1.65) BS01 ZN N/A N/A N/A 34279224
    154746 7l0b:B (1.65) BS02 ZN N/A N/A N/A 34279224
    154747 7l0b:C (1.65) BS01 ZN N/A N/A N/A 34279224
    154748 7l0b:C (1.65) BS02 ZN N/A N/A N/A 34279224
    154749 7l0b:D (1.65) BS01 ZN N/A N/A N/A 34279224
    154750 7l0b:D (1.65) BS02 ZN N/A N/A N/A 34279224
    154751 7l0e:A (1.9) BS01 FE2 3.1.1.64
    5.3.3.22
    GO:0001786 ... Q28175 34081480
    154752 7l0e:B (1.9) BS01 FE2 3.1.1.64
    5.3.3.22
    GO:0001786 ... Q28175 34081480
    154753 7l0f:A (1.98) BS01 MG 3.6.5.2 GO:0003924 ... P01112 33976200
    154754 7l0f:E (1.98) BS01 MG 3.6.5.2 GO:0003924 ... P01112 33976200
    154755 7l0f:G (1.98) BS01 MG 3.6.5.2 GO:0003924 ... P01112 33976200
    154756 7l0f:L (1.98) BS01 MG 3.6.5.2 GO:0003924 ... P01112 33976200
    154757 7l0g:A (2.54) BS02 MG 3.6.5.2 GO:0003924 ... P01112 33976200
    154758 7l0g:B (2.54) BS02 MG 3.6.5.2 GO:0003924 ... P01112 33976200
    154759 7l0g:E (2.54) BS02 MG 3.6.5.2 GO:0003924 ... P01112 33976200
    154760 7l0g:G (2.54) BS02 MG 3.6.5.2 GO:0003924 ... P01112 33976200
    154761 7l0n:E (2.78) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 33621484
    154762 7l0n:F (2.78) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 33621484
    154763 7l0o:A (2.7) BS01 CA ? N/A P16952 34473090
    154764 7l0o:A (2.7) BS02 CA ? N/A P16952 34473090
    154765 7l0o:B (2.7) BS01 CA ? N/A P16952 34473090
    154766 7l0o:B (2.7) BS02 CA ? N/A P16952 34473090
    154767 7l1q:E (3.4) BS02 MG 7.1.2.2 GO:0005515 ... P07677 34344897
    154768 7l1s:B (3.6) BS02 MG 7.1.2.2 GO:0005524 ... A0A0M3VGF9 34344897
    154769 7l1s:F (3.6) BS02 MG 7.1.2.2 GO:0005515 ... P07677 34344897
    154770 7l20:0 (3.15) BS02 ZN ? GO:0003723 ... Q9BYC8 34127662
    154771 7l20:4 (3.15) BS02 ZN ? GO:0003735 ... Q9P0J6 34127662
    154772 7l20:w (3.15) BS02 MG 3.6.5.- GO:0003924 ... Q969S9 34127662
    154773 7l21:A (2.29) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 36897854
    154774 7l21:B (2.29) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 36897854
    154775 7l21:C (2.29) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 36897854
    154776 7l21:D (2.29) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 36897854
    154777 7l27:A (1.7) BS01 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154778 7l27:B (1.7) BS01 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154779 7l27:C (1.7) BS01 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154780 7l27:D (1.7) BS01 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154781 7l28:A (2.2) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154782 7l28:B (2.2) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154783 7l28:C (2.2) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154784 7l28:D (2.2) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154785 7l29:A (2.08) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154786 7l29:A (2.08) BS03 CA 3.1.4.17 GO:0004114 ... Q14432 34272366
    154787 7l29:B (2.08) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154788 7l29:C (2.08) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154789 7l29:D (2.08) BS02 MN 3.1.4.17 GO:0004114 ... Q14432 34272366
    154790 7l2c:B (3.65) BS01 CA ? N/A P0DTC2 33789084
    154791 7l2c:C (3.65) BS01 CA N/A N/A N/A 33789084
    154792 7l2c:C (3.65) BS02 CA N/A N/A N/A 33789084
    154793 7l2c:D (3.65) BS01 CA N/A N/A N/A 33789084
    154794 7l2c:H (3.65) BS01 CA N/A N/A N/A 33789084
    154795 7l36:A (1.84) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 34584739
    154796 7l36:A (1.84) BS02 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 34584739
    154797 7l3g:A (1.27) BS01 CA 3.2.1.17 GO:0003796 ... P00720 34667539
    154798 7l3l:A (2.8) BS01 ZN ? GO:0005164 ... O00463 33539883
    154799 7l3l:A (2.8) BS02 ZN ? GO:0005164 ... O00463 33539883
    154800 7l3l:A (2.8) BS03 ZN ? GO:0005164 ... O00463 33539883

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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