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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    151601 7enb:B (2.3) BS01 FE 1.14.11.- GO:0016114 ... A0A2I1BSX0 34285212
    151602 7enc:0 (4.13) BS01 ZN ? GO:0000082 ... P51948 33958484
    151603 7enc:0 (4.13) BS02 ZN ? GO:0000082 ... P51948 33958484
    151604 7enc:2 (4.13) BS01 ZN ? GO:0000438 ... Q13888 33958484
    151605 7enc:2 (4.13) BS02 ZN ? GO:0000438 ... Q13888 33958484
    151606 7enc:2 (4.13) BS03 ZN ? GO:0000438 ... Q13888 33958484
    151607 7enc:3 (4.13) BS01 ZN ? GO:0000438 ... Q13889 33958484
    151608 7enc:BA (4.13) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 33958484
    151609 7enc:EA (4.13) BS01 ZN ? GO:0001113 ... P29083 33958484
    151610 7enc:PA (4.13) BS01 ZN N/A GO:0003677 ... N/A 33958484
    151611 7enc:PA (4.13) BS02 ZN N/A GO:0003677 ... N/A 33958484
    151612 7enc:PA (4.13) BS03 MG N/A GO:0003677 ... N/A 33958484
    151613 7enc:PB (4.13) BS01 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 33958484
    151614 7enc:PC (4.13) BS01 ZN ? GO:0000428 ... I3LCH3 33958484
    151615 7enc:PI (4.13) BS01 ZN ? GO:0000428 ... P60899 33958484
    151616 7enc:PI (4.13) BS02 ZN ? GO:0000428 ... P60899 33958484
    151617 7enc:PJ (4.13) BS01 ZN N/A GO:0003677 ... N/A 33958484
    151618 7enc:PL (4.13) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 33958484
    151619 7enj:0 (4.4) BS01 ZN ? GO:0000151 ... Q6P2C8 33958484
    151620 7enl:A (2.2) BS01 MG 4.2.1.11 GO:0000015 ... P00924 2007120
    151621 7enu:A (2.322) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    151622 7enu:B (2.322) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    151623 7eo3:A (1.141) BS01 MG N/A GO:0004553 ... N/A N/A
    151624 7epq:A (2.2) BS05 MG ? GO:0016462 ... B2RHQ2 34214602
    151625 7epq:B (2.2) BS05 MG ? GO:0016462 ... B2RHQ2 34214602
    151626 7epq:B (2.2) BS06 MG ? GO:0016462 ... B2RHQ2 34214602
    151627 7eq7:A (2.111) BS01 CA ? GO:0001525 ... P07355 N/A
    151628 7eq7:A (2.111) BS02 CA ? GO:0001525 ... P07355 N/A
    151629 7eqd:L (2.76) BS06 FE ? GO:0009772 ... P10717 34323477
    151630 7eqd:M (2.76) BS03 FE ? GO:0009772 ... Q2RQ26 34323477
    151631 7eqk:A (2.04001) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151632 7eqk:B (2.04001) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151633 7eqm:A (2.50002) BS02 MG ? GO:0006811 ... L0RVU0 37394001
    151634 7eqm:B (2.50002) BS01 MG ? GO:0006811 ... L0RVU0 37394001
    151635 7eqm:C (2.50002) BS01 MG ? GO:0006811 ... L0RVU0 37394001
    151636 7equ:A (2.743) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    151637 7equ:B (2.743) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    151638 7eqv:A (2.6) BS01 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 35534851
    151639 7eqx:C (2.08) BS01 ZN 3.4.17.2 GO:0004181 ... A0A1S4F020 34750241
    151640 7eqx:D (2.08) BS01 ZN 3.4.17.2 GO:0004181 ... A0A1S4F020 34750241
    151641 7eqz:A (2.2) BS01 ZN 3.4.17.2 GO:0004181 ... A0A1S4F020 34658092
    151642 7erh:A (1.55) BS02 CA ? N/A P02766 34547896
    151643 7erh:B (1.55) BS01 CA ? N/A P02766 34547896
    151644 7erm:A (2.32) BS01 MG N/A N/A N/A N/A
    151645 7erm:B (2.32) BS01 MG N/A N/A N/A N/A
    151646 7erm:C (2.32) BS01 MG N/A N/A N/A N/A
    151647 7erm:D (2.32) BS01 MG N/A N/A N/A N/A
    151648 7ern:A (2.05) BS02 MG N/A N/A N/A N/A
    151649 7ern:B (2.05) BS02 MG N/A N/A N/A N/A
    151650 7ern:C (2.05) BS02 MG N/A N/A N/A N/A
    151651 7ern:D (2.05) BS02 MG N/A N/A N/A N/A
    151652 7ero:A (2.12) BS02 MG N/A N/A N/A N/A
    151653 7ero:B (2.12) BS02 MG N/A N/A N/A N/A
    151654 7ero:C (2.12) BS02 MG N/A N/A N/A N/A
    151655 7ero:D (2.12) BS02 MG N/A N/A N/A N/A
    151656 7esa:A (1.8) BS02 MG 2.7.1.180 GO:0005524 ... A0A0H3GJF7 35281791
    151657 7esb:A (1.7) BS02 MG 2.7.1.180 GO:0005524 ... A0A0H3GJF7 35281791
    151658 7esb:A (1.7) BS03 MG 2.7.1.180 GO:0005524 ... A0A0H3GJF7 35281791
    151659 7esc:A (2.201) BS02 MG 2.7.1.180 GO:0005524 ... A0A0H3GJF7 35281791
    151660 7esi:A (1.8) BS03 ZN 3.4.24.3 GO:0004222 ... A0A8B3DGT3 35091565
    151661 7esi:A (1.8) BS04 CA 3.4.24.3 GO:0004222 ... A0A8B3DGT3 35091565
    151662 7esk:A (1.05) BS01 CA N/A N/A N/A 34303708
    151663 7esr:A (1.42) BS01 CA 3.5.3.11 GO:0005737 ... P73270 35264792
    151664 7esr:A (1.42) BS02 CA 3.5.3.11 GO:0005737 ... P73270 35264792
    151665 7est:E (1.8) BS02 CA 3.4.21.36 GO:0004252 ... P00772 2354062
    151666 7esy:B (2.297) BS01 CA N/A N/A N/A 34620712
    151667 7esz:A (2.476) BS01 MN N/A N/A N/A 34620712
    151668 7esz:C (2.476) BS01 MN N/A N/A N/A 34620712
    151669 7et1:A (2.6) BS01 MG 7.2.2.19 GO:0000166 ... P19156 34588453
    151670 7et9:A (1.9) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151671 7et9:B (1.9) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151672 7et9:C (1.9) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151673 7eta:A (1.9) BS02 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151674 7eta:B (1.9) BS02 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151675 7eta:C (1.9) BS02 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151676 7etb:A (1.85) BS02 MN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151677 7etb:B (1.85) BS02 MN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151678 7etb:C (1.85) BS02 MN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151679 7etc:A (1.95) BS01 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151680 7etc:B (1.95) BS01 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151681 7etc:C (1.95) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151682 7etd:A (1.9) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151683 7etd:B (1.9) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151684 7etd:C (1.9) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151685 7ete:A (1.9) BS02 MG 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151686 7ete:B (1.9) BS02 MG 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151687 7ete:C (1.9) BS03 MG 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151688 7etf:A (2.0) BS02 MN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151689 7etf:B (2.0) BS03 MN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151690 7etf:C (2.0) BS03 MN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151691 7etg:A (1.9) BS02 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151692 7etg:B (1.9) BS03 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151693 7etg:C (1.9) BS03 CO 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151694 7eth:A (2.2) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151695 7eth:B (2.2) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151696 7eth:C (2.2) BS02 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151697 7eti:A (1.95) BS03 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151698 7eti:B (1.95) BS04 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151699 7eti:C (1.95) BS04 ZN 4.1.2.52 GO:0003824 ... A0A8I1ZEE8 34624314
    151700 7etk:A (1.22027) BS02 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    151701 7etk:B (1.22027) BS02 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    151702 7etl:A (1.99213) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    151703 7etl:B (1.99213) BS01 CO 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    151704 7etl:B (1.99213) BS02 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    151705 7eu0:A (3.16) BS03 ZN 2.7.7.6 GO:0000418 ... Q9LQ02 34941388
    151706 7eu0:A (3.16) BS04 MG 2.7.7.6 GO:0000418 ... Q9LQ02 34941388
    151707 7eu0:A (3.16) BS05 ZN 2.7.7.6 GO:0000418 ... Q9LQ02 34941388
    151708 7eu0:B (3.16) BS03 ZN 2.7.7.6 GO:0000418 ... Q9LK40 34941388
    151709 7eu0:C (3.16) BS01 ZN ? GO:0000418 ... Q39211 34941388
    151710 7eu0:I (3.16) BS01 ZN ? GO:0000419 ... Q6NLH0 34941388
    151711 7eu0:I (3.16) BS02 ZN ? GO:0000419 ... Q6NLH0 34941388
    151712 7eu0:J (3.16) BS01 ZN ? GO:0000418 ... Q8LFJ6 34941388
    151713 7eu0:L (3.16) BS01 ZN ? GO:0000418 ... Q9FLM8 34941388
    151714 7eu0:M (3.16) BS03 MG 2.7.7.48 GO:0003723 ... O82504 34941388
    151715 7eu1:A (3.86) BS01 ZN 2.7.7.6 GO:0000418 ... Q9LQ02 34941388
    151716 7eu1:A (3.86) BS02 MG 2.7.7.6 GO:0000418 ... Q9LQ02 34941388
    151717 7eu1:A (3.86) BS03 ZN 2.7.7.6 GO:0000418 ... Q9LQ02 34941388
    151718 7eu1:B (3.86) BS01 ZN 2.7.7.6 GO:0000418 ... Q9LK40 34941388
    151719 7eu1:I (3.86) BS01 ZN ? GO:0000419 ... Q6NLH0 34941388
    151720 7eu1:I (3.86) BS02 ZN ? GO:0000419 ... Q6NLH0 34941388
    151721 7eu1:J (3.86) BS01 ZN ? GO:0000418 ... Q8LFJ6 34941388
    151722 7eu1:L (3.86) BS01 ZN ? GO:0000418 ... Q9FLM8 34941388
    151723 7eu1:M (3.86) BS01 MG 2.7.7.48 GO:0003723 ... O82504 34941388
    151724 7eu6:A (2.05011) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151725 7eu6:B (2.05011) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151726 7eue:A (2.08757) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151727 7eue:B (2.08757) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151728 7euk:A (1.4) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151729 7euk:A (1.4) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151730 7euk:B (1.4) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151731 7euk:B (1.4) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151732 7eul:A (1.45) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151733 7eul:A (1.45) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151734 7eul:A (1.45) BS03 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151735 7eun:A (1.28) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151736 7eun:A (1.28) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151737 7eun:B (1.28) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151738 7eun:B (1.28) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151739 7eun:B (1.28) BS03 MG 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151740 7eun:B (1.28) BS04 MG 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151741 7eup:A (2.11043) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151742 7eup:B (2.11043) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151743 7euq:A (1.8) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151744 7euq:A (1.8) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151745 7euq:A (1.8) BS03 MG 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151746 7euq:B (1.8) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151747 7euq:B (1.8) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 35634777
    151748 7eus:A (2.3) BS01 CU 1.-.-.- GO:0016491 ... A0A2G5I8W0 N/A
    151749 7eus:B (2.3) BS01 CU 1.-.-.- GO:0016491 ... A0A2G5I8W0 N/A
    151750 7eut:A (2.497) BS01 CU 1.-.-.- GO:0016491 ... A0A2G5I8W0 N/A
    151751 7eut:B (2.497) BS01 CU 1.-.-.- GO:0016491 ... A0A2G5I8W0 N/A
    151752 7euu:A (2.202) BS01 CU 1.-.-.- GO:0016491 ... A0A2G5I8W0 N/A
    151753 7euu:B (2.202) BS01 CU 1.-.-.- GO:0016491 ... A0A2G5I8W0 N/A
    151754 7euz:A (1.91028) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151755 7euz:B (1.91028) BS01 FE ? GO:0046872 ... L7PIL3 N/A
    151756 7ev0:A (2.7) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    151757 7ev0:P (2.7) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    151758 7ev1:A (1.38) BS01 CA ? GO:0005509 ... Q12864 34364873
    151759 7ev1:A (1.38) BS02 CA ? GO:0005509 ... Q12864 34364873
    151760 7ev1:A (1.38) BS03 CA ? GO:0005509 ... Q12864 34364873
    151761 7ev1:B (1.38) BS01 CA ? GO:0005509 ... Q12864 34364873
    151762 7ev1:B (1.38) BS02 CA ? GO:0005509 ... Q12864 34364873
    151763 7ev1:B (1.38) BS03 CA ? GO:0005509 ... Q12864 34364873
    151764 7ev5:A (1.44) BS01 ZN ? GO:0046872 ... A0A060M4R1 34502284
    151765 7ev5:A (1.44) BS02 ZN ? GO:0046872 ... A0A060M4R1 34502284
    151766 7ev7:A (1.7) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    151767 7ev7:A (1.7) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    151768 7ev7:F (1.7) BS01 ZN ? GO:0005740 ... P00428 N/A
    151769 7ev7:N (1.7) BS03 CU 7.1.1.9 GO:0004129 ... P00396 N/A
    151770 7ev7:N (1.7) BS04 MG 7.1.1.9 GO:0004129 ... P00396 N/A
    151771 7ev7:S (1.7) BS01 ZN ? GO:0005740 ... P00428 N/A
    151772 7ev9:A (2.6) BS01 CU1 1.14.18.3 N/A G1UBD1 34170126
    151773 7ev9:A (2.6) BS02 CU1 1.14.18.3 N/A G1UBD1 34170126
    151774 7ev9:E (2.6) BS01 CU1 1.14.18.3 N/A G1UBD1 34170126
    151775 7ev9:E (2.6) BS02 CU1 1.14.18.3 N/A G1UBD1 34170126
    151776 7ev9:I (2.6) BS01 CU1 1.14.18.3 N/A G1UBD1 34170126
    151777 7ev9:I (2.6) BS02 CU1 1.14.18.3 N/A G1UBD1 34170126
    151778 7evn:D (2.6) BS01 ZN ? GO:0000398 ... Q7RTV0 N/A
    151779 7evn:D (2.6) BS02 ZN ? GO:0000398 ... Q7RTV0 N/A
    151780 7evn:D (2.6) BS03 ZN ? GO:0000398 ... Q7RTV0 N/A
    151781 7evo:6 (2.5) BS02 ZN ? GO:0000398 ... Q7RTV0 38196034
    151782 7evo:6 (2.5) BS03 ZN ? GO:0000398 ... Q7RTV0 38196034
    151783 7evo:6 (2.5) BS04 ZN ? GO:0000398 ... Q7RTV0 38196034
    151784 7evo:C (2.5) BS02 ZN ? GO:0000375 ... Q12874 38196034
    151785 7evq:A (2.6) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    151786 7evq:B (2.6) BS01 FE 3.4.21.- GO:0005576 ... P24627 N/A
    151787 7ewu:B (2.11) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151788 7ewu:B (2.11) BS02 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151789 7ewu:C (2.11) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151790 7ewu:C (2.11) BS02 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151791 7ewu:D (2.11) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151792 7ewu:D (2.11) BS02 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151793 7ewv:A (2.61) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151794 7eww:A (2.34) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151795 7eww:B (2.34) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151796 7ewx:A (1.95) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151797 7ewx:B (1.95) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151798 7ewz:A (2.05) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151799 7ewz:B (2.05) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    151800 7ex0:A (2.07) BS01 MN 2.7.7.48 N/A A0A059WLS9 35044209
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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