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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    144401 6xqe:14 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 32817463
    144402 6xqe:15 (3.0) BS02 MG ? GO:0003735 ... P80339 32817463
    144403 6xqe:15 (3.0) BS03 ZN ? GO:0003735 ... P80339 32817463
    144404 6xqe:16 (3.0) BS02 MG ? GO:0000049 ... P35871 32817463
    144405 6xqe:16 (3.0) BS03 MG ? GO:0000049 ... P35871 32817463
    144406 6xqe:16 (3.0) BS04 ZN ? GO:0000049 ... P35871 32817463
    144407 6xqe:17 (3.0) BS02 MG ? GO:0003735 ... P80340 32817463
    144408 6xqe:17 (3.0) BS03 MG ? GO:0003735 ... P80340 32817463
    144409 6xqe:18 (3.0) BS02 MG ? GO:0003735 ... Q5SKU1 32817463
    144410 6xqe:18 (3.0) BS03 MG ? GO:0003735 ... Q5SKU1 32817463
    144411 6xqe:19 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 32817463
    144412 6xqe:1D (3.0) BS03 MG ? GO:0002181 ... P60405 32817463
    144413 6xqe:1D (3.0) BS04 MG ? GO:0002181 ... P60405 32817463
    144414 6xqe:1D (3.0) BS05 MG ? GO:0002181 ... P60405 32817463
    144415 6xqe:1D (3.0) BS06 MG ? GO:0002181 ... P60405 32817463
    144416 6xqe:1D (3.0) BS07 MG ? GO:0002181 ... P60405 32817463
    144417 6xqe:1D (3.0) BS08 MG ? GO:0002181 ... P60405 32817463
    144418 6xqe:1D (3.0) BS09 MG ? GO:0002181 ... P60405 32817463
    144419 6xqe:1E (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 32817463
    144420 6xqe:1E (3.0) BS03 MG ? GO:0003735 ... Q5SHN8 32817463
    144421 6xqe:1E (3.0) BS04 MG ? GO:0003735 ... Q5SHN8 32817463
    144422 6xqe:1E (3.0) BS05 MG ? GO:0003735 ... Q5SHN8 32817463
    144423 6xqe:1F (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 32817463
    144424 6xqe:1F (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 32817463
    144425 6xqe:1F (3.0) BS04 MG ? GO:0003735 ... Q5SHN9 32817463
    144426 6xqe:1F (3.0) BS05 MG ? GO:0003735 ... Q5SHN9 32817463
    144427 6xqe:1F (3.0) BS06 MG ? GO:0003735 ... Q5SHN9 32817463
    144428 6xqe:1F (3.0) BS07 MG ? GO:0003735 ... Q5SHN9 32817463
    144429 6xqe:1F (3.0) BS08 MG ? GO:0003735 ... Q5SHN9 32817463
    144430 6xqe:1G (3.0) BS04 MG ? GO:0000049 ... Q5SHQ0 32817463
    144431 6xqe:1G (3.0) BS05 MG ? GO:0000049 ... Q5SHQ0 32817463
    144432 6xqe:1N (3.0) BS02 MG ? GO:0003729 ... P60488 32817463
    144433 6xqe:1N (3.0) BS03 MG ? GO:0003729 ... P60488 32817463
    144434 6xqe:1O (3.0) BS03 MG ? GO:0003735 ... Q5SHP8 32817463
    144435 6xqe:1P (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 32817463
    144436 6xqe:1P (3.0) BS03 MG ? GO:0003735 ... Q5SHQ7 32817463
    144437 6xqe:1P (3.0) BS04 MG ? GO:0003735 ... Q5SHQ7 32817463
    144438 6xqe:1Q (3.0) BS03 MG ? GO:0000049 ... P60489 32817463
    144439 6xqe:1Q (3.0) BS04 MG ? GO:0000049 ... P60489 32817463
    144440 6xqe:1Q (3.0) BS05 MG ? GO:0000049 ... P60489 32817463
    144441 6xqe:1Q (3.0) BS06 MG ? GO:0000049 ... P60489 32817463
    144442 6xqe:1R (3.0) BS02 MG ? GO:0003735 ... Q9Z9H5 32817463
    144443 6xqe:1R (3.0) BS03 MG ? GO:0003735 ... Q9Z9H5 32817463
    144444 6xqe:1R (3.0) BS04 MG ? GO:0003735 ... Q9Z9H5 32817463
    144445 6xqe:1S (3.0) BS03 MG ? GO:0003735 ... Q5SHQ4 32817463
    144446 6xqe:1S (3.0) BS04 MG ? GO:0003735 ... Q5SHQ4 32817463
    144447 6xqe:1U (3.0) BS02 MG ? GO:0000027 ... P60491 32817463
    144448 6xqe:1U (3.0) BS03 MG ? GO:0000027 ... P60491 32817463
    144449 6xqe:1U (3.0) BS04 MG ? GO:0000027 ... P60491 32817463
    144450 6xqe:1U (3.0) BS05 MG ? GO:0000027 ... P60491 32817463
    144451 6xqe:1U (3.0) BS06 MG ? GO:0000027 ... P60491 32817463
    144452 6xqe:1U (3.0) BS07 MG ? GO:0000027 ... P60491 32817463
    144453 6xqe:1V (3.0) BS02 MG ? GO:0003723 ... P60492 32817463
    144454 6xqe:1V (3.0) BS03 MG ? GO:0003723 ... P60492 32817463
    144455 6xqe:1V (3.0) BS04 MG ? GO:0003723 ... P60492 32817463
    144456 6xqe:1W (3.0) BS02 MG ? GO:0003735 ... Q5SHP3 32817463
    144457 6xqe:1W (3.0) BS03 MG ? GO:0003735 ... Q5SHP3 32817463
    144458 6xqe:1W (3.0) BS04 MG ? GO:0003735 ... Q5SHP3 32817463
    144459 6xqe:1W (3.0) BS05 MG ? GO:0003735 ... Q5SHP3 32817463
    144460 6xqe:1X (3.0) BS02 MG ? GO:0000027 ... Q5SHP0 32817463
    144461 6xqe:1X (3.0) BS03 MG ? GO:0000027 ... Q5SHP0 32817463
    144462 6xqe:1X (3.0) BS04 MG ? GO:0000027 ... Q5SHP0 32817463
    144463 6xqe:1Y (3.0) BS02 MG ? GO:0003723 ... Q5SHP9 32817463
    144464 6xqe:1Y (3.0) BS03 ZN ? GO:0003723 ... Q5SHP9 32817463
    144465 6xqe:1e (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 32817463
    144466 6xqe:1f (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 32817463
    144467 6xqe:1k (3.0) BS02 MG ? GO:0003735 ... P80376 32817463
    144468 6xqe:1l (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 32817463
    144469 6xqe:1m (3.0) BS03 MG ? GO:0000049 ... P80377 32817463
    144470 6xqe:1n (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 32817463
    144471 6xqe:24 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 32817463
    144472 6xqe:25 (3.0) BS02 MG ? GO:0003735 ... P80339 32817463
    144473 6xqe:25 (3.0) BS03 ZN ? GO:0003735 ... P80339 32817463
    144474 6xqe:26 (3.0) BS02 ZN ? GO:0000049 ... P35871 32817463
    144475 6xqe:27 (3.0) BS02 MG ? GO:0003735 ... P80340 32817463
    144476 6xqe:29 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 32817463
    144477 6xqe:2D (3.0) BS03 MG ? GO:0002181 ... P60405 32817463
    144478 6xqe:2D (3.0) BS04 MG ? GO:0002181 ... P60405 32817463
    144479 6xqe:2D (3.0) BS05 MG ? GO:0002181 ... P60405 32817463
    144480 6xqe:2D (3.0) BS06 MG ? GO:0002181 ... P60405 32817463
    144481 6xqe:2E (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 32817463
    144482 6xqe:2F (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 32817463
    144483 6xqe:2F (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 32817463
    144484 6xqe:2Q (3.0) BS03 MG ? GO:0000049 ... P60489 32817463
    144485 6xqe:2Q (3.0) BS04 MG ? GO:0000049 ... P60489 32817463
    144486 6xqe:2U (3.0) BS02 MG ? GO:0000027 ... P60491 32817463
    144487 6xqe:2W (3.0) BS02 MG ? GO:0003735 ... Q5SHP3 32817463
    144488 6xqe:2Y (3.0) BS02 ZN ? GO:0003723 ... Q5SHP9 32817463
    144489 6xqe:2e (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 32817463
    144490 6xqe:2f (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 32817463
    144491 6xqe:2j (3.0) BS02 MG ? GO:0000049 ... Q5SHN7 32817463
    144492 6xqe:2k (3.0) BS02 MG ? GO:0003735 ... P80376 32817463
    144493 6xqe:2n (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 32817463
    144494 6xqe:2q (3.0) BS02 MG ? GO:0003735 ... P0DOY7 32817463
    144495 6xqe:2t (3.0) BS02 MG ? GO:0003723 ... P80380 32817463
    144496 6xqf:A (1.58) BS03 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    144497 6xqg:A (2.15) BS03 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    144498 6xqh:A (1.57) BS04 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    144499 6xqi:A (2.34) BS01 ZN ? GO:0019058 ... P12520 34824204
    144500 6xqi:B (2.34) BS02 ZN ? GO:0019058 ... P12520 34824204
    144501 6xqi:C (2.34) BS02 ZN ? GO:0019058 ... P12520 34824204
    144502 6xqi:D (2.34) BS01 ZN ? GO:0019058 ... P12520 34824204
    144503 6xqj:A (-1.00) BS01 ZN ? GO:0003684 ... P12520
    P54725    		 34824204
    144504 6xql:A (1.97) BS03 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    144505 6xqm:A (1.85) BS04 CA 3.2.1.39 GO:0004553 ... A0A0B5H9B3 33556371
    144506 6xqo:I (3.1) BS01 CA ? GO:0005509 ... Q9BPX6 32667285
    144507 6xqo:I (3.1) BS02 CA ? GO:0005509 ... Q9BPX6 32667285
    144508 6xqo:J (3.1) BS01 CA ? GO:0005509 ... Q8IYU8 32667285
    144509 6xqo:J (3.1) BS02 CA ? GO:0005509 ... Q8IYU8 32667285
    144510 6xr0:M (3.064) BS01 FE ? GO:0005576 ... P08582 N/A
    144511 6xrc:A (2.45) BS02 MG ? GO:0005524 ... Q9L069 32885650
    144512 6xrc:B (2.45) BS02 MG ? GO:0005524 ... Q9L069 32885650
    144513 6xre:A (4.6) BS01 MG 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33767390
    144514 6xre:A (4.6) BS02 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33767390
    144515 6xre:A (4.6) BS03 ZN 2.7.7.48
    2.7.7.6
    3.1.13.-    		 GO:0000287 ... P24928 33767390
    144516 6xre:I (4.6) BS01 ZN ? GO:0000428 ... P36954 33767390
    144517 6xre:I (4.6) BS02 ZN ? GO:0000428 ... P36954 33767390
    144518 6xre:L (4.6) BS01 ZN ? GO:0000428 ... P53803 33767390
    144519 6xrh:B (1.44) BS03 NA 4.2.1.20 GO:0000162 ... P0A2K1 33428374
    144520 6xrv:B (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144521 6xrv:C (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144522 6xrv:D (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144523 6xrv:E (1.43) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144524 6xrv:F (1.43) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144525 6xs3:A (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144526 6xs3:B (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144527 6xs3:B (2.48) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144528 6xs3:C (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144529 6xs3:D (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144530 6xs3:E (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144531 6xs3:F (2.48) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    144532 6xsb:A (1.95) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    144533 6xsc:A (2.0) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    144534 6xse:A (2.1) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    144535 6xsg:A (2.0) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    144536 6xsh:A (2.0) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    144537 6xsi:A (2.0) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    144538 6xsj:A (1.4) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33814275
    144539 6xsj:B (1.4) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 33814275
    144540 6xsp:B (2.3) BS01 CU ? GO:0003756 ... P0AEG4 34364222
    144541 6xsq:B (2.3) BS02 CU ? GO:0003756 ... P0AEG4 34364222
    144542 6xsv:A (1.65) BS03 CA 3.2.1.1 GO:0004556 ... P0C1B3 33814275
    144543 6xsw:C (2.98) BS01 CA ? GO:0007219 ... Q9UM47 34095881
    144544 6xsw:C (2.98) BS02 CA ? GO:0007219 ... Q9UM47 34095881
    144545 6xsw:C (2.98) BS03 CA ? GO:0007219 ... Q9UM47 34095881
    144546 6xsw:F (2.98) BS01 CA ? GO:0007219 ... Q9UM47 34095881
    144547 6xsw:F (2.98) BS02 CA ? GO:0007219 ... Q9UM47 34095881
    144548 6xsw:F (2.98) BS03 CA ? GO:0007219 ... Q9UM47 34095881
    144549 6xsw:J (2.98) BS01 CA ? GO:0007219 ... Q9UM47 34095881
    144550 6xsw:J (2.98) BS02 CA ? GO:0007219 ... Q9UM47 34095881
    144551 6xsw:J (2.98) BS03 CA ? GO:0007219 ... Q9UM47 34095881
    144552 6xsw:X (2.98) BS01 CA ? GO:0007219 ... Q9UM47 34095881
    144553 6xsw:X (2.98) BS02 CA ? GO:0007219 ... Q9UM47 34095881
    144554 6xsw:X (2.98) BS03 CA ? GO:0007219 ... Q9UM47 34095881
    144555 6xsw:X (2.98) BS04 CA ? GO:0007219 ... Q9UM47 34095881
    144556 6xsz:A (2.25) BS01 ZN ? N/A F8UNJ8 N/A
    144557 6xsz:B (2.25) BS01 ZN ? N/A F8UNJ8 N/A
    144558 6xsz:C (2.25) BS01 ZN ? N/A F8UNJ8 N/A
    144559 6xsz:D (2.25) BS01 ZN ? N/A F8UNJ8 N/A
    144560 6xt0:B (1.37) BS03 NA 4.2.1.20 GO:0000162 ... P0A2K1 33428374
    144561 6xt1:A (2.49) BS02 ZN ? N/A F8UNJ8 N/A
    144562 6xt1:B (2.49) BS02 ZN ? N/A F8UNJ8 N/A
    144563 6xt1:C (2.49) BS01 ZN ? N/A F8UNJ8 N/A
    144564 6xt1:D (2.49) BS01 ZN ? N/A F8UNJ8 N/A
    144565 6xt2:A (1.55) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 33675814
    144566 6xt2:A (1.55) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 33675814
    144567 6xt2:B (1.55) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 33675814
    144568 6xt2:B (1.55) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 33675814
    144569 6xt2:C (1.55) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 33675814
    144570 6xt2:C (1.55) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 33675814
    144571 6xt2:D (1.55) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 33675814
    144572 6xt2:D (1.55) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 33675814
    144573 6xt3:B (1.99) BS02 CU ? GO:0003756 ... P0AEG4 34364222
    144574 6xt6:A (2.103) BS01 MN ? GO:0005537 ... P02866 34235541
    144575 6xt6:A (2.103) BS02 CA ? GO:0005537 ... P02866 34235541
    144576 6xt6:A (2.103) BS03 ZN ? GO:0005537 ... P02866 34235541
    144577 6xt6:A (2.103) BS04 CA ? GO:0005537 ... P02866 34235541
    144578 6xt6:B (2.103) BS01 MN ? GO:0005537 ... P02866 34235541
    144579 6xt6:B (2.103) BS02 CA ? GO:0005537 ... P02866 34235541
    144580 6xt6:B (2.103) BS03 ZN ? GO:0005537 ... P02866 34235541
    144581 6xtl:A (1.8) BS02 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144582 6xtl:A (1.8) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144583 6xtm:A (1.25) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144584 6xtm:A (1.25) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144585 6xtn:A (1.4) BS02 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144586 6xtn:A (1.4) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144587 6xto:A (1.4) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144588 6xto:A (1.4) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144589 6xto:A (1.4) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144590 6xtp:A (1.8) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144591 6xtp:A (1.8) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144592 6xtp:A (1.8) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144593 6xtq:A (1.4) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144594 6xtq:A (1.4) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144595 6xtq:A (1.4) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144596 6xtr:A (1.2) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144597 6xtr:A (1.2) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144598 6xtr:A (1.2) BS04 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144599 6xts:A (1.2) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    144600 6xts:A (1.2) BS03 CA 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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