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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    144001 6xhy:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 33462493
    144002 6xhy:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    144003 6xhy:1k (2.6) BS02 MG ? GO:0003735 ... P80376 33462493
    144004 6xhy:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 33462493
    144005 6xhy:1m (2.6) BS04 MG ? GO:0000049 ... P80377 33462493
    144006 6xhy:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    144007 6xhy:1t (2.6) BS02 MG ? GO:0003723 ... P80380 33462493
    144008 6xhy:21 (2.6) BS03 MG ? GO:0003735 ... P60494 33462493
    144009 6xhy:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    144010 6xhy:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    144011 6xhy:25 (2.6) BS02 MG ? GO:0003735 ... P80339 33462493
    144012 6xhy:25 (2.6) BS03 MG ? GO:0003735 ... P80339 33462493
    144013 6xhy:25 (2.6) BS04 ZN ? GO:0003735 ... P80339 33462493
    144014 6xhy:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 33462493
    144015 6xhy:27 (2.6) BS02 MG ? GO:0003735 ... P80340 33462493
    144016 6xhy:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    144017 6xhy:2D (2.6) BS03 MG ? GO:0002181 ... P60405 33462493
    144018 6xhy:2D (2.6) BS04 MG ? GO:0002181 ... P60405 33462493
    144019 6xhy:2D (2.6) BS05 MG ? GO:0002181 ... P60405 33462493
    144020 6xhy:2D (2.6) BS06 MG ? GO:0002181 ... P60405 33462493
    144021 6xhy:2D (2.6) BS07 MG ? GO:0002181 ... P60405 33462493
    144022 6xhy:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 33462493
    144023 6xhy:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 33462493
    144024 6xhy:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 33462493
    144025 6xhy:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 33462493
    144026 6xhy:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 33462493
    144027 6xhy:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 33462493
    144028 6xhy:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 33462493
    144029 6xhy:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 33462493
    144030 6xhy:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 33462493
    144031 6xhy:2T (2.6) BS03 MG ? GO:0003735 ... P60490 33462493
    144032 6xhy:2V (2.6) BS02 MG ? GO:0003723 ... P60492 33462493
    144033 6xhy:2V (2.6) BS03 MG ? GO:0003723 ... P60492 33462493
    144034 6xhy:2V (2.6) BS04 MG ? GO:0003723 ... P60492 33462493
    144035 6xhy:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    144036 6xhy:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 33462493
    144037 6xhy:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 33462493
    144038 6xhy:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    144039 6xhy:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    144040 6xhy:2k (2.6) BS03 MG ? GO:0003735 ... P80376 33462493
    144041 6xhy:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 33462493
    144042 6xhy:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 33462493
    144043 6xhy:2l (2.6) BS04 MG ? GO:0000049 ... Q5SHN3 33462493
    144044 6xhy:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    144045 6xhy:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 33462493
    144046 6xhy:2r (2.6) BS02 MG ? GO:0003735 ... Q5SLQ0 33462493
    144047 6xhy:2t (2.6) BS02 MG ? GO:0003723 ... P80380 33462493
    144048 6xi1:AAA (1.75) BS01 CA ? N/A A0KNW4 32984811
    144049 6xi1:AAA (1.75) BS02 CA ? N/A A0KNW4 32984811
    144050 6xi1:AAA (1.75) BS03 CA ? N/A A0KNW4 32984811
    144051 6xi1:AAA (1.75) BS04 CA ? N/A A0KNW4 32984811
    144052 6xi1:AAA (1.75) BS05 CA ? N/A A0KNW4 32984811
    144053 6xi1:AAA (1.75) BS06 CA ? N/A A0KNW4 32984811
    144054 6xi1:AAA (1.75) BS07 CA ? N/A A0KNW4 32984811
    144055 6xi1:AAA (1.75) BS08 CA ? N/A A0KNW4 32984811
    144056 6xi1:AAA (1.75) BS09 CA ? N/A A0KNW4 32984811
    144057 6xi1:AAA (1.75) BS10 CA ? N/A A0KNW4 32984811
    144058 6xi1:AAA (1.75) BS11 CA ? N/A A0KNW4 32984811
    144059 6xi1:AAA (1.75) BS12 CA ? N/A A0KNW4 32984811
    144060 6xi1:AAA (1.75) BS13 CA ? N/A A0KNW4 32984811
    144061 6xi1:BBB (1.75) BS01 CA ? N/A A0KNW4 32984811
    144062 6xi1:BBB (1.75) BS02 CA ? N/A A0KNW4 32984811
    144063 6xi1:BBB (1.75) BS03 CA ? N/A A0KNW4 32984811
    144064 6xi1:BBB (1.75) BS04 CA ? N/A A0KNW4 32984811
    144065 6xi1:BBB (1.75) BS05 CA ? N/A A0KNW4 32984811
    144066 6xi1:BBB (1.75) BS06 CA ? N/A A0KNW4 32984811
    144067 6xi1:BBB (1.75) BS07 CA ? N/A A0KNW4 32984811
    144068 6xi1:BBB (1.75) BS08 CA ? N/A A0KNW4 32984811
    144069 6xi1:BBB (1.75) BS09 CA ? N/A A0KNW4 32984811
    144070 6xi1:BBB (1.75) BS10 CA ? N/A A0KNW4 32984811
    144071 6xi1:BBB (1.75) BS11 CA ? N/A A0KNW4 32984811
    144072 6xi1:BBB (1.75) BS12 CA ? N/A A0KNW4 32984811
    144073 6xi1:BBB (1.75) BS13 CA ? N/A A0KNW4 32984811
    144074 6xi3:AAA (2.0) BS01 CA N/A N/A N/A 32984811
    144075 6xi3:AAA (2.0) BS02 CA N/A N/A N/A 32984811
    144076 6xi3:AAA (2.0) BS03 CA N/A N/A N/A 32984811
    144077 6xi3:AAA (2.0) BS04 CA N/A N/A N/A 32984811
    144078 6xi7:A (1.95) BS02 MG 3.6.5.2 GO:0003924 ... P01116 33608534
    144079 6xi7:B (1.95) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 33608534
    144080 6xi7:B (1.95) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 33608534
    144081 6xi7:B (1.95) BS03 ZN 2.7.11.1 GO:0007165 ... P04049 33608534
    144082 6xii:AE (7.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    144083 6xii:AE (7.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    144084 6xii:AE (7.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    144085 6xij:AE (8.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    144086 6xij:AE (8.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    144087 6xij:AE (8.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    144088 6xim:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    144089 6xim:A (2.5) BS03 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    144090 6xim:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    144091 6xim:B (2.5) BS03 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    144092 6xim:C (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    144093 6xim:C (2.5) BS03 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    144094 6xim:D (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    144095 6xim:D (2.5) BS03 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    144096 6xiq:AQ (4.2) BS02 ZN ? GO:0003735 ... N/A 32855298
    144097 6xiq:AR (4.2) BS02 ZN ? GO:0000028 ... P35997 32855298
    144098 6xiq:AT (4.2) BS02 ZN ? GO:0003735 ... N/A 32855298
    144099 6xiq:j (4.2) BS03 ZN ? GO:0000448 ... P49166 32855298
    144100 6xiq:m (4.2) BS02 ZN ? GO:0000027 ... P0CH08 32855298
    144101 6xiq:o (4.2) BS02 ZN ? GO:0002181 ... P0CX27 32855298
    144102 6xiq:p (4.2) BS03 ZN ? GO:0002181 ... P0CX25 32855298
    144103 6xir:AQ (3.2) BS03 ZN ? GO:0003735 ... N/A 32855298
    144104 6xir:AR (3.2) BS02 ZN ? GO:0000028 ... P35997 32855298
    144105 6xir:AT (3.2) BS02 ZN ? GO:0003735 ... N/A 32855298
    144106 6xir:j (3.2) BS03 ZN ? GO:0000448 ... P49166 32855298
    144107 6xir:o (3.2) BS02 ZN ? GO:0002181 ... P0CX27 32855298
    144108 6xir:p (3.2) BS02 ZN ? GO:0002181 ... P0CX25 32855298
    144109 6xiy:A (2.307) BS02 CA ? N/A Q8IUN9 33724805
    144110 6xiy:A (2.307) BS03 CA ? N/A Q8IUN9 33724805
    144111 6xiy:A (2.307) BS04 CA ? N/A Q8IUN9 33724805
    144112 6xiz:A (1.8) BS01 CU N/A GO:0005507 ... N/A 33635570
    144113 6xiz:A (1.8) BS02 CU N/A GO:0005507 ... N/A 33635570
    144114 6xiz:B (1.8) BS01 CU N/A GO:0005507 ... N/A 33635570
    144115 6xiz:B (1.8) BS02 CU N/A GO:0005507 ... N/A 33635570
    144116 6xj0:A (2.34) BS01 CU N/A GO:0005507 ... N/A 33635570
    144117 6xj0:A (2.34) BS02 CU N/A GO:0005507 ... N/A 33635570
    144118 6xj3:A (1.85) BS02 CA 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    144119 6xj3:B (1.85) BS02 CA 3.5.2.6 GO:0008658 ... Q4LAV3 N/A
    144120 6xj5:A (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144121 6xj5:A (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144122 6xj5:A (3.11) BS03 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144123 6xj5:B (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144124 6xj5:B (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144125 6xj5:C (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144126 6xj5:C (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144127 6xj5:D (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144128 6xj5:D (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144129 6xj5:D (3.11) BS03 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144130 6xj5:E (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144131 6xj5:E (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144132 6xj5:F (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144133 6xj5:F (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144134 6xj5:G (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144135 6xj5:G (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144136 6xj5:H (3.11) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144137 6xj5:H (3.11) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 37030124
    144138 6xjd:K (6.8) BS01 ZN 2.7.7.86 N/A Q8C6L5 32911481
    144139 6xjd:L (6.8) BS01 ZN 2.7.7.86 N/A Q8C6L5 32911481
    144140 6xjh:C (3.6) BS02 MG ? GO:0005524 ... X5EJW5 32998902
    144141 6xjh:D (3.6) BS03 MG ? GO:0005524 ... X5EJW5 32998902
    144142 6xji:C (4.0) BS02 MG ? GO:0005524 ... X5EJW5 32998902
    144143 6xji:D (4.0) BS03 MG ? GO:0005524 ... X5EJW5 32998902
    144144 6xjj:A (2.7) BS01 FE 1.14.-.- GO:0016706 ... B8M9K5 N/A
    144145 6xjn:A (2.2) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 34546351
    144146 6xjo:A (2.1) BS02 MG 3.6.5.- GO:0003924 ... Q6DD88 34546351
    144147 6xjo:B (2.1) BS02 MG 3.6.5.- GO:0003924 ... Q6DD88 34546351
    144148 6xjp:A (2.802) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    144149 6xjr:A (1.941) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    144150 6xjs:A (1.942) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    144151 6xjt:A (2.406) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    144152 6xju:A (2.193) BS02 MG 3.6.5.- GO:0000054 ... P62826 33451349
    144153 6xk9:C (3.64) BS02 ZN ? GO:0005515 ... Q96SW2 33197925
    144154 6xk9:Z (3.64) BS02 ZN ? GO:0005515 ... Q96SW2 33197925
    144155 6xkd:A (3.2) BS01 ZN 3.1.4.1
    3.6.1.9    		 GO:0000902 ... P06802 32726585
    144156 6xkd:A (3.2) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0000902 ... P06802 32726585
    144157 6xkd:A (3.2) BS03 CA 3.1.4.1
    3.6.1.9    		 GO:0000902 ... P06802 32726585
    144158 6xkd:B (3.2) BS01 ZN 3.1.4.1
    3.6.1.9    		 GO:0000902 ... P06802 32726585
    144159 6xkd:B (3.2) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0000902 ... P06802 32726585
    144160 6xkd:B (3.2) BS03 CA 3.1.4.1
    3.6.1.9    		 GO:0000902 ... P06802 32726585
    144161 6xkm:B (2.25) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33972410
    144162 6xkm:B (2.25) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 33972410
    144163 6xkw:n (5.2) BS04 CU 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    144164 6xkx:n (6.1) BS03 CU 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    144165 6xkz:n (7.2) BS03 CU 7.1.1.9 GO:0004129 ... D5ARP4 33568648
    144166 6xl1:A (1.95) BS02 MN ? GO:0003676 ... F2NWD3 33461211
    144167 6xl1:B (1.95) BS02 MN ? GO:0003676 ... F2NWD3 33461211
    144168 6xl1:B (1.95) BS03 MN ? GO:0003676 ... F2NWD3 33461211
    144169 6xl4:D (2.06) BS01 MG 2.7.10.1 GO:0004672 ... P00533 35534503
    144170 6xl5:D (2.5) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144171 6xl5:D (2.5) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144172 6xl5:D (2.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144173 6xl9:D (2.5) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144174 6xl9:D (2.5) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144175 6xl9:D (2.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144176 6xlc:B (3.66) BS02 MG ? GO:0000492 ... P15108 N/A
    144177 6xld:A (3.66) BS02 MG ? GO:0000492 ... P15108 N/A
    144178 6xld:B (3.66) BS02 MG ? GO:0000492 ... P15108 N/A
    144179 6xle:A (2.74) BS02 MG ? GO:0000492 ... P15108 N/A
    144180 6xle:B (2.74) BS02 MG ? GO:0000492 ... P15108 N/A
    144181 6xlf:A (3.15) BS02 MG ? GO:0000492 ... P15108 N/A
    144182 6xlg:A (2.71) BS02 MG ? GO:0000492 ... P15108 N/A
    144183 6xlg:B (2.71) BS02 MG ? GO:0000492 ... P15108 N/A
    144184 6xlh:A (2.83) BS02 MG ? GO:0000492 ... P15108 N/A
    144185 6xlh:B (2.83) BS02 MG ? GO:0000492 ... P15108 N/A
    144186 6xlj:D (2.7) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144187 6xlj:D (2.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144188 6xll:D (2.7) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144189 6xll:D (2.7) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144190 6xll:D (2.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144191 6xlm:D (3.2) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144192 6xlm:D (3.2) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144193 6xlm:D (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144194 6xln:D (2.8) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144195 6xln:D (2.8) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144196 6xln:D (2.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 33976201
    144197 6xlr:A (1.23) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 33091303
    144198 6xlr:A (1.23) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    144199 6xls:A (1.797) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 33091303
    144200 6xls:A (1.797) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 33091303
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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