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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    143601 6xhv:1X (2.4) BS03 MG ? GO:0000027 ... Q5SHP0 33462493
    143602 6xhv:1X (2.4) BS04 MG ? GO:0000027 ... Q5SHP0 33462493
    143603 6xhv:1X (2.4) BS05 MG ? GO:0000027 ... Q5SHP0 33462493
    143604 6xhv:1X (2.4) BS06 MG ? GO:0000027 ... Q5SHP0 33462493
    143605 6xhv:1Y (2.4) BS02 MG ? GO:0003723 ... Q5SHP9 33462493
    143606 6xhv:1Y (2.4) BS03 ZN ? GO:0003723 ... Q5SHP9 33462493
    143607 6xhv:1Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 33462493
    143608 6xhv:1b (2.4) BS02 MG ? GO:0003735 ... P80371 33462493
    143609 6xhv:1e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    143610 6xhv:1e (2.4) BS03 MG ? GO:0003723 ... Q5SHQ5 33462493
    143611 6xhv:1f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    143612 6xhv:1k (2.4) BS02 MG ? GO:0003735 ... P80376 33462493
    143613 6xhv:1l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 33462493
    143614 6xhv:1m (2.4) BS04 MG ? GO:0000049 ... P80377 33462493
    143615 6xhv:1n (2.4) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    143616 6xhv:1t (2.4) BS02 MG ? GO:0003723 ... P80380 33462493
    143617 6xhv:21 (2.4) BS03 MG ? GO:0003735 ... P60494 33462493
    143618 6xhv:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    143619 6xhv:24 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    143620 6xhv:25 (2.4) BS02 ZN ? GO:0003735 ... P80339 33462493
    143621 6xhv:26 (2.4) BS02 ZN ? GO:0000049 ... P35871 33462493
    143622 6xhv:27 (2.4) BS02 MG ? GO:0003735 ... P80340 33462493
    143623 6xhv:29 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    143624 6xhv:2D (2.4) BS03 MG ? GO:0002181 ... P60405 33462493
    143625 6xhv:2D (2.4) BS04 MG ? GO:0002181 ... P60405 33462493
    143626 6xhv:2D (2.4) BS05 MG ? GO:0002181 ... P60405 33462493
    143627 6xhv:2D (2.4) BS06 MG ? GO:0002181 ... P60405 33462493
    143628 6xhv:2D (2.4) BS07 MG ? GO:0002181 ... P60405 33462493
    143629 6xhv:2E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 33462493
    143630 6xhv:2F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 33462493
    143631 6xhv:2F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 33462493
    143632 6xhv:2F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 33462493
    143633 6xhv:2G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 33462493
    143634 6xhv:2Q (2.4) BS04 MG ? GO:0000049 ... P60489 33462493
    143635 6xhv:2Q (2.4) BS05 MG ? GO:0000049 ... P60489 33462493
    143636 6xhv:2Q (2.4) BS06 MG ? GO:0000049 ... P60489 33462493
    143637 6xhv:2U (2.4) BS02 MG ? GO:0000027 ... P60491 33462493
    143638 6xhv:2U (2.4) BS03 MG ? GO:0000027 ... P60491 33462493
    143639 6xhv:2V (2.4) BS02 MG ? GO:0003723 ... P60492 33462493
    143640 6xhv:2V (2.4) BS03 MG ? GO:0003723 ... P60492 33462493
    143641 6xhv:2V (2.4) BS04 MG ? GO:0003723 ... P60492 33462493
    143642 6xhv:2W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    143643 6xhv:2W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 33462493
    143644 6xhv:2X (2.4) BS02 MG ? GO:0000027 ... Q5SHP0 33462493
    143645 6xhv:2Y (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 33462493
    143646 6xhv:2Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 33462493
    143647 6xhv:2e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    143648 6xhv:2f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    143649 6xhv:2j (2.4) BS02 MG ? GO:0000049 ... Q5SHN7 33462493
    143650 6xhv:2k (2.4) BS02 MG ? GO:0003735 ... P80376 33462493
    143651 6xhv:2l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 33462493
    143652 6xhv:2n (2.4) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    143653 6xhv:2q (2.4) BS02 MG ? GO:0003735 ... P0DOY7 33462493
    143654 6xhv:2q (2.4) BS03 MG ? GO:0003735 ... P0DOY7 33462493
    143655 6xhv:2r (2.4) BS02 MG ? GO:0003735 ... Q5SLQ0 33462493
    143656 6xhv:2t (2.4) BS02 MG ? GO:0003723 ... P80380 33462493
    143657 6xhw:10 (2.5) BS04 MG ? GO:0003735 ... P60493 33462493
    143658 6xhw:10 (2.5) BS05 MG ? GO:0003735 ... P60493 33462493
    143659 6xhw:10 (2.5) BS06 MG ? GO:0003735 ... P60493 33462493
    143660 6xhw:11 (2.5) BS03 MG ? GO:0003735 ... P60494 33462493
    143661 6xhw:11 (2.5) BS04 MG ? GO:0003735 ... P60494 33462493
    143662 6xhw:12 (2.5) BS02 MG ? GO:0003735 ... Q5SHP6 33462493
    143663 6xhw:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    143664 6xhw:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 33462493
    143665 6xhw:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    143666 6xhw:15 (2.5) BS02 MG ? GO:0003735 ... P80339 33462493
    143667 6xhw:15 (2.5) BS03 MG ? GO:0003735 ... P80339 33462493
    143668 6xhw:15 (2.5) BS04 ZN ? GO:0003735 ... P80339 33462493
    143669 6xhw:16 (2.5) BS02 MG ? GO:0000049 ... P35871 33462493
    143670 6xhw:16 (2.5) BS03 MG ? GO:0000049 ... P35871 33462493
    143671 6xhw:16 (2.5) BS04 ZN ? GO:0000049 ... P35871 33462493
    143672 6xhw:17 (2.5) BS02 MG ? GO:0003735 ... P80340 33462493
    143673 6xhw:17 (2.5) BS03 MG ? GO:0003735 ... P80340 33462493
    143674 6xhw:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 33462493
    143675 6xhw:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 33462493
    143676 6xhw:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    143677 6xhw:1D (2.5) BS02 MG ? GO:0002181 ... P60405 33462493
    143678 6xhw:1D (2.5) BS03 MG ? GO:0002181 ... P60405 33462493
    143679 6xhw:1D (2.5) BS04 MG ? GO:0002181 ... P60405 33462493
    143680 6xhw:1D (2.5) BS05 MG ? GO:0002181 ... P60405 33462493
    143681 6xhw:1D (2.5) BS06 MG ? GO:0002181 ... P60405 33462493
    143682 6xhw:1D (2.5) BS07 MG ? GO:0002181 ... P60405 33462493
    143683 6xhw:1D (2.5) BS08 MG ? GO:0002181 ... P60405 33462493
    143684 6xhw:1D (2.5) BS09 MG ? GO:0002181 ... P60405 33462493
    143685 6xhw:1D (2.5) BS10 MG ? GO:0002181 ... P60405 33462493
    143686 6xhw:1D (2.5) BS11 MG ? GO:0002181 ... P60405 33462493
    143687 6xhw:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 33462493
    143688 6xhw:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 33462493
    143689 6xhw:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 33462493
    143690 6xhw:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 33462493
    143691 6xhw:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 33462493
    143692 6xhw:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 33462493
    143693 6xhw:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 33462493
    143694 6xhw:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 33462493
    143695 6xhw:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 33462493
    143696 6xhw:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 33462493
    143697 6xhw:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 33462493
    143698 6xhw:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 33462493
    143699 6xhw:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 33462493
    143700 6xhw:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 33462493
    143701 6xhw:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 33462493
    143702 6xhw:1N (2.5) BS02 MG ? GO:0003729 ... P60488 33462493
    143703 6xhw:1N (2.5) BS03 MG ? GO:0003729 ... P60488 33462493
    143704 6xhw:1N (2.5) BS04 MG ? GO:0003729 ... P60488 33462493
    143705 6xhw:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 33462493
    143706 6xhw:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 33462493
    143707 6xhw:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 33462493
    143708 6xhw:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 33462493
    143709 6xhw:1P (2.5) BS05 MG ? GO:0003735 ... Q5SHQ7 33462493
    143710 6xhw:1P (2.5) BS06 MG ? GO:0003735 ... Q5SHQ7 33462493
    143711 6xhw:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 33462493
    143712 6xhw:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 33462493
    143713 6xhw:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 33462493
    143714 6xhw:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 33462493
    143715 6xhw:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 33462493
    143716 6xhw:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 33462493
    143717 6xhw:1S (2.5) BS03 MG ? GO:0003735 ... Q5SHQ4 33462493
    143718 6xhw:1S (2.5) BS04 MG ? GO:0003735 ... Q5SHQ4 33462493
    143719 6xhw:1T (2.5) BS03 MG ? GO:0003735 ... P60490 33462493
    143720 6xhw:1U (2.5) BS02 MG ? GO:0000027 ... P60491 33462493
    143721 6xhw:1U (2.5) BS03 MG ? GO:0000027 ... P60491 33462493
    143722 6xhw:1U (2.5) BS04 MG ? GO:0000027 ... P60491 33462493
    143723 6xhw:1U (2.5) BS05 MG ? GO:0000027 ... P60491 33462493
    143724 6xhw:1U (2.5) BS06 MG ? GO:0000027 ... P60491 33462493
    143725 6xhw:1U (2.5) BS07 MG ? GO:0000027 ... P60491 33462493
    143726 6xhw:1U (2.5) BS08 MG ? GO:0000027 ... P60491 33462493
    143727 6xhw:1V (2.5) BS02 MG ? GO:0003723 ... P60492 33462493
    143728 6xhw:1V (2.5) BS03 MG ? GO:0003723 ... P60492 33462493
    143729 6xhw:1V (2.5) BS04 MG ? GO:0003723 ... P60492 33462493
    143730 6xhw:1V (2.5) BS05 MG ? GO:0003723 ... P60492 33462493
    143731 6xhw:1V (2.5) BS06 MG ? GO:0003723 ... P60492 33462493
    143732 6xhw:1V (2.5) BS07 MG ? GO:0003723 ... P60492 33462493
    143733 6xhw:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    143734 6xhw:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 33462493
    143735 6xhw:1W (2.5) BS04 MG ? GO:0003735 ... Q5SHP3 33462493
    143736 6xhw:1W (2.5) BS05 MG ? GO:0003735 ... Q5SHP3 33462493
    143737 6xhw:1W (2.5) BS06 MG ? GO:0003735 ... Q5SHP3 33462493
    143738 6xhw:1W (2.5) BS07 MG ? GO:0003735 ... Q5SHP3 33462493
    143739 6xhw:1W (2.5) BS08 MG ? GO:0003735 ... Q5SHP3 33462493
    143740 6xhw:1X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 33462493
    143741 6xhw:1X (2.5) BS03 MG ? GO:0000027 ... Q5SHP0 33462493
    143742 6xhw:1X (2.5) BS04 MG ? GO:0000027 ... Q5SHP0 33462493
    143743 6xhw:1X (2.5) BS05 MG ? GO:0000027 ... Q5SHP0 33462493
    143744 6xhw:1X (2.5) BS06 MG ? GO:0000027 ... Q5SHP0 33462493
    143745 6xhw:1Y (2.5) BS02 MG ? GO:0003723 ... Q5SHP9 33462493
    143746 6xhw:1Y (2.5) BS03 MG ? GO:0003723 ... Q5SHP9 33462493
    143747 6xhw:1Y (2.5) BS04 ZN ? GO:0003723 ... Q5SHP9 33462493
    143748 6xhw:1Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 33462493
    143749 6xhw:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    143750 6xhw:1e (2.5) BS03 MG ? GO:0003723 ... Q5SHQ5 33462493
    143751 6xhw:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    143752 6xhw:1k (2.5) BS02 MG ? GO:0003735 ... P80376 33462493
    143753 6xhw:1m (2.5) BS03 MG ? GO:0000049 ... P80377 33462493
    143754 6xhw:1n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    143755 6xhw:1t (2.5) BS02 MG ? GO:0003723 ... P80380 33462493
    143756 6xhw:21 (2.5) BS03 MG ? GO:0003735 ... P60494 33462493
    143757 6xhw:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    143758 6xhw:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 33462493
    143759 6xhw:25 (2.5) BS02 MG ? GO:0003735 ... P80339 33462493
    143760 6xhw:25 (2.5) BS03 MG ? GO:0003735 ... P80339 33462493
    143761 6xhw:25 (2.5) BS04 ZN ? GO:0003735 ... P80339 33462493
    143762 6xhw:26 (2.5) BS02 MG ? GO:0000049 ... P35871 33462493
    143763 6xhw:26 (2.5) BS03 ZN ? GO:0000049 ... P35871 33462493
    143764 6xhw:27 (2.5) BS02 MG ? GO:0003735 ... P80340 33462493
    143765 6xhw:28 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 33462493
    143766 6xhw:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 33462493
    143767 6xhw:2D (2.5) BS03 MG ? GO:0002181 ... P60405 33462493
    143768 6xhw:2D (2.5) BS04 MG ? GO:0002181 ... P60405 33462493
    143769 6xhw:2D (2.5) BS05 MG ? GO:0002181 ... P60405 33462493
    143770 6xhw:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 33462493
    143771 6xhw:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 33462493
    143772 6xhw:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 33462493
    143773 6xhw:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 33462493
    143774 6xhw:2Q (2.5) BS04 MG ? GO:0000049 ... P60489 33462493
    143775 6xhw:2Q (2.5) BS05 MG ? GO:0000049 ... P60489 33462493
    143776 6xhw:2T (2.5) BS03 MG ? GO:0003735 ... P60490 33462493
    143777 6xhw:2U (2.5) BS02 MG ? GO:0000027 ... P60491 33462493
    143778 6xhw:2V (2.5) BS02 MG ? GO:0003723 ... P60492 33462493
    143779 6xhw:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 33462493
    143780 6xhw:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 33462493
    143781 6xhw:2X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 33462493
    143782 6xhw:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 33462493
    143783 6xhw:2Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 33462493
    143784 6xhw:2e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 33462493
    143785 6xhw:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 33462493
    143786 6xhw:2g (2.5) BS03 MG ? GO:0000028 ... P17291 33462493
    143787 6xhw:2k (2.5) BS03 MG ? GO:0003735 ... P80376 33462493
    143788 6xhw:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 33462493
    143789 6xhw:2l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 33462493
    143790 6xhw:2n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 33462493
    143791 6xhw:2q (2.5) BS02 MG ? GO:0003735 ... P0DOY7 33462493
    143792 6xhw:2q (2.5) BS03 MG ? GO:0003735 ... P0DOY7 33462493
    143793 6xhw:2t (2.5) BS02 MG ? GO:0003723 ... P80380 33462493
    143794 6xhx:10 (2.55) BS03 MG ? GO:0003735 ... P60493 33462493
    143795 6xhx:10 (2.55) BS04 MG ? GO:0003735 ... P60493 33462493
    143796 6xhx:10 (2.55) BS05 MG ? GO:0003735 ... P60493 33462493
    143797 6xhx:11 (2.55) BS02 MG ? GO:0003735 ... P60494 33462493
    143798 6xhx:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 33462493
    143799 6xhx:13 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 33462493
    143800 6xhx:13 (2.55) BS05 MG ? GO:0003735 ... Q5SHQ6 33462493
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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