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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    141001 6vaw:C (1.75) BS03 CA ? GO:0030246 ... P02872 33135679
    141002 6vaw:D (1.75) BS02 MN ? GO:0030246 ... P02872 33135679
    141003 6vaw:D (1.75) BS03 CA ? GO:0030246 ... P02872 33135679
    141004 6vb8:A (2.2) BS01 CA ? GO:0005537 ... P55915 N/A
    141005 6vb8:A (2.2) BS02 MN ? GO:0005537 ... P55915 N/A
    141006 6vb9:A (1.881) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 33688722
    141007 6vb9:C (1.881) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 33688722
    141008 6vb9:D (1.881) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 33688722
    141009 6vbf:A (1.85) BS01 CA N/A GO:0000160 ... N/A N/A
    141010 6vbf:A (1.85) BS02 CA N/A GO:0000160 ... N/A N/A
    141011 6vbf:B (1.85) BS01 CA N/A GO:0000160 ... N/A N/A
    141012 6vbf:B (1.85) BS02 CA N/A GO:0000160 ... N/A N/A
    141013 6vbr:A (2.75) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    141014 6vbr:A (2.75) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    141015 6vbs:A (1.7) BS01 CU 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141016 6vbs:A (1.7) BS02 ZN 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141017 6vbs:B (1.7) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141018 6vbs:B (1.7) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141019 6vbs:C (1.7) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141020 6vbs:C (1.7) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141021 6vbs:D (1.7) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141022 6vbs:D (1.7) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141023 6vbs:E (1.7) BS01 CU 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141024 6vbs:E (1.7) BS02 ZN 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141025 6vbs:F (1.7) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141026 6vbs:F (1.7) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141027 6vbt:A (1.7) BS01 CU 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141028 6vbt:A (1.7) BS02 ZN 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141029 6vbt:B (1.7) BS01 ZN 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141030 6vbt:B (1.7) BS02 CU 1.15.1.1 GO:0004784 ... P0CW86 N/A
    141031 6vbu:2 (3.1) BS01 CA ? GO:0005737 ... Q32L13 31939736
    141032 6vbu:2 (3.1) BS02 CA ? GO:0005737 ... Q32L13 31939736
    141033 6vbv:2 (3.5) BS01 CA ? GO:0005737 ... Q32L13 31939736
    141034 6vbv:2 (3.5) BS02 CA ? GO:0005737 ... Q32L13 31939736
    141035 6vbw:I (3.2) BS01 ZN N/A N/A N/A 31925391
    141036 6vbw:J (3.2) BS01 ZN N/A N/A N/A 31925391
    141037 6vbz:A (2.192) BS01 MN ? GO:0004672 ... D3ZKP6 32561735
    141038 6vbz:B (2.192) BS01 MN ? GO:0004672 ... D3ZKP6 32561735
    141039 6vc3:A (1.95) BS02 MN ? GO:0030246 ... P02872 33135679
    141040 6vc3:A (1.95) BS03 CA ? GO:0030246 ... P02872 33135679
    141041 6vc3:B (1.95) BS02 MN ? GO:0030246 ... P02872 33135679
    141042 6vc3:B (1.95) BS03 CA ? GO:0030246 ... P02872 33135679
    141043 6vc3:C (1.95) BS01 MN ? GO:0030246 ... P02872 33135679
    141044 6vc3:C (1.95) BS02 CA ? GO:0030246 ... P02872 33135679
    141045 6vc3:D (1.95) BS02 MN ? GO:0030246 ... P02872 33135679
    141046 6vc3:D (1.95) BS03 CA ? GO:0030246 ... P02872 33135679
    141047 6vc4:A (1.9) BS02 MN ? GO:0030246 ... P02872 33135679
    141048 6vc4:A (1.9) BS03 CA ? GO:0030246 ... P02872 33135679
    141049 6vc4:B (1.9) BS02 MN ? GO:0030246 ... P02872 33135679
    141050 6vc4:B (1.9) BS03 CA ? GO:0030246 ... P02872 33135679
    141051 6vc4:C (1.9) BS02 MN ? GO:0030246 ... P02872 33135679
    141052 6vc4:C (1.9) BS03 CA ? GO:0030246 ... P02872 33135679
    141053 6vc4:D (1.9) BS02 MN ? GO:0030246 ... P02872 33135679
    141054 6vc4:D (1.9) BS03 CA ? GO:0030246 ... P02872 33135679
    141055 6vc6:A (2.133) BS01 MN N/A GO:0003824 ... N/A N/A
    141056 6vc6:B (2.133) BS01 MN N/A GO:0003824 ... N/A N/A
    141057 6vc6:C (2.133) BS01 MN N/A GO:0003824 ... N/A N/A
    141058 6vc6:D (2.133) BS01 MN N/A GO:0003824 ... N/A N/A
    141059 6vc7:A (2.05) BS01 MG ? N/A P40709 33082366
    141060 6vc7:B (2.05) BS01 MG ? N/A P40709 33082366
    141061 6vc7:C (2.05) BS01 MG ? N/A P40709 33082366
    141062 6vc7:D (2.05) BS01 MG ? N/A P40709 33082366
    141063 6vc7:E (2.05) BS01 MG ? N/A P40709 33082366
    141064 6vc7:F (2.05) BS01 MG ? N/A P40709 33082366
    141065 6vc8:A (2.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 34983849
    141066 6vc8:B (2.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 34983849
    141067 6vc9:A (2.25) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33122192
    141068 6vc9:A (2.25) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 33122192
    141069 6vcf:A (2.687) BS01 FE2 ? GO:0003834 ... A0A128A3G4 32747548
    141070 6vcf:B (2.687) BS01 FE2 ? GO:0003834 ... A0A128A3G4 32747548
    141071 6vcf:C (2.687) BS01 FE2 ? GO:0003834 ... A0A128A3G4 32747548
    141072 6vcf:D (2.687) BS01 FE2 ? GO:0003834 ... A0A128A3G4 32747548
    141073 6vcf:E (2.687) BS01 FE2 ? GO:0003834 ... A0A128A3G4 32747548
    141074 6vcf:F (2.687) BS01 FE2 ? GO:0003834 ... A0A128A3G4 32747548
    141075 6vcg:A (2.3) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141076 6vcg:B (2.3) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141077 6vcg:C (2.3) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141078 6vcg:D (2.3) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141079 6vcg:E (2.3) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141080 6vcg:F (2.3) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141081 6vch:A (2.35) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141082 6vch:B (2.35) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141083 6vch:C (2.35) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141084 6vch:D (2.35) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141085 6vch:E (2.35) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141086 6vch:F (2.35) BS01 CO ? GO:0003834 ... A0A128A3G4 32747548
    141087 6vck:B (2.69) BS01 MG 3.6.1.- GO:0000287 ... P0A776 31960065
    141088 6vck:B (2.69) BS02 MG 3.6.1.- GO:0000287 ... P0A776 31960065
    141089 6vcl:B (2.06) BS01 MG 3.6.1.- GO:0000287 ... P0A776 31960065
    141090 6vcl:B (2.06) BS02 MG 3.6.1.- GO:0000287 ... P0A776 31960065
    141091 6vcm:B (2.35) BS01 MG 3.6.1.- GO:0000287 ... P0A776 31960065
    141092 6vd8:A (2.3) BS01 ZN ? N/A Q9I6A3 32505855
    141093 6vd8:A (2.3) BS02 ZN ? N/A Q9I6A3 32505855
    141094 6vd8:A (2.3) BS03 ZN ? N/A Q9I6A3 32505855
    141095 6vd8:B (2.3) BS01 ZN ? N/A Q9I6A3 32505855
    141096 6vd8:B (2.3) BS02 ZN ? N/A Q9I6A3 32505855
    141097 6vda:A (2.4) BS01 ZN ? N/A Q9WZX9 32505855
    141098 6vdb:A (2.3) BS03 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32939018
    141099 6vdb:A (2.3) BS04 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32939018
    141100 6vdb:A (2.3) BS05 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32939018
    141101 6vdc:A (2.402) BS01 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    141102 6vde:A (2.713) BS01 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    141103 6vde:A (2.713) BS02 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    141104 6vde:A (2.713) BS03 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    141105 6vde:B (2.713) BS01 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    141106 6vde:B (2.713) BS02 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    141107 6vde:B (2.713) BS03 MN 2.7.7.7 GO:0003676 ... A0QYZ2 32034423
    141108 6vdf:A (1.92) BS01 MN ? N/A P40709 33082366
    141109 6vdf:D (1.92) BS02 MN ? N/A P40709 33082366
    141110 6vdk:A (4.5) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 32061936
    141111 6vdk:C (4.5) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 32061936
    141112 6vdk:C (4.5) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 32061936
    141113 6vdl:A (1.95) BS01 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26664 N/A
    141114 6vdm:A (1.9) BS01 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26664 N/A
    141115 6vdn:A (2.15) BS01 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26664 N/A
    141116 6vdo:A (2.11) BS01 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26664 N/A
    141117 6ve1:B (2.1) BS01 MG 3.2.1.96 GO:0004553 ... P04067 33201877
    141118 6ve1:C (2.1) BS01 MG 3.2.1.96 GO:0004553 ... P04067 33201877
    141119 6ve1:C (2.1) BS02 MG 3.2.1.96 GO:0004553 ... P04067 33201877
    141120 6ve1:D (2.1) BS01 MG 3.2.1.96 GO:0004553 ... P04067 33201877
    141121 6vel:C (2.65) BS01 CA ? GO:0000794 ... P12830
    Q12306
    36157596
    141122 6vel:C (2.65) BS02 CA ? GO:0000794 ... P12830
    Q12306
    36157596
    141123 6vel:C (2.65) BS03 CA ? GO:0000794 ... P12830
    Q12306
    36157596
    141124 6ven:N (3.37) BS01 ZN 2.1.1.354 GO:0042800 ... P38827 31922488
    141125 6vez:A (1.875) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141126 6vez:A (1.875) BS06 CA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141127 6vf0:A (1.58) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141128 6vf0:A (1.58) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141129 6vf1:A (1.68) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141130 6vf1:A (1.68) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141131 6vf2:A (1.6) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141132 6vf3:A (1.521) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141133 6vf3:A (1.521) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141134 6vf3:A (1.521) BS07 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141135 6vf4:A (1.75) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141136 6vf4:A (1.75) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141137 6vf4:A (1.75) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141138 6vf5:A (1.6) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141139 6vf5:A (1.6) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141140 6vf5:A (1.6) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141141 6vf6:A (1.69) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141142 6vf6:A (1.69) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141143 6vf6:A (1.69) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141144 6vf7:A (1.871) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141145 6vf7:A (1.871) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141146 6vf7:A (1.871) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141147 6vf8:A (1.7) BS04 CA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141148 6vf8:A (1.7) BS05 CA 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141149 6vf9:A (1.56) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141150 6vfa:A (1.76) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141151 6vfa:A (1.76) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141152 6vfa:A (1.76) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141153 6vfa:A (1.76) BS07 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141154 6vfb:A (1.55) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141155 6vfb:A (1.55) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141156 6vfb:A (1.55) BS07 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141157 6vfc:A (1.59) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141158 6vfc:A (1.59) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141159 6vfc:A (1.59) BS06 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141160 6vfc:A (1.59) BS07 MN 2.7.7.7 GO:0003677 ... Q9NP87 N/A
    141161 6vff:A (2.8) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 32597966
    141162 6vff:B (2.8) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 32597966
    141163 6vfo:A (-1.00) BS01 ZN 2.3.2.27 N/A Q8VDF2 32609811
    141164 6vfo:A (-1.00) BS02 ZN 2.3.2.27 N/A Q8VDF2 32609811
    141165 6vfo:A (-1.00) BS03 ZN 2.3.2.27 N/A Q8VDF2 32609811
    141166 6vfp:A (3.2) BS01 CA ? GO:0005509 ... Q08174 32101743
    141167 6vfp:A (3.2) BS02 CA ? GO:0005509 ... Q08174 32101743
    141168 6vfp:A (3.2) BS03 CA ? GO:0005509 ... Q08174 32101743
    141169 6vfp:A (3.2) BS04 CA ? GO:0005509 ... Q08174 32101743
    141170 6vfp:A (3.2) BS05 CA ? GO:0005509 ... Q08174 32101743
    141171 6vfp:A (3.2) BS06 CA ? GO:0005509 ... Q08174 32101743
    141172 6vfp:A (3.2) BS07 CA ? GO:0005509 ... Q08174 32101743
    141173 6vfp:A (3.2) BS08 CA ? GO:0005509 ... Q08174 32101743
    141174 6vfp:A (3.2) BS09 CA ? GO:0005509 ... Q08174 32101743
    141175 6vfq:A (2.3) BS01 CA ? GO:0005509 ... Q9P2E7 32101743
    141176 6vfq:A (2.3) BS02 CA ? GO:0005509 ... Q9P2E7 32101743
    141177 6vfq:A (2.3) BS03 CA ? GO:0005509 ... Q9P2E7 32101743
    141178 6vfq:A (2.3) BS04 CA ? GO:0005509 ... Q9P2E7 32101743
    141179 6vfq:A (2.3) BS05 CA ? GO:0005509 ... Q9P2E7 32101743
    141180 6vfq:A (2.3) BS06 CA ? GO:0005509 ... Q9P2E7 32101743
    141181 6vfq:A (2.3) BS07 CA ? GO:0005509 ... Q9P2E7 32101743
    141182 6vfq:A (2.3) BS08 CA ? GO:0005509 ... Q9P2E7 32101743
    141183 6vfq:A (2.3) BS09 CA ? GO:0005509 ... Q9P2E7 32101743
    141184 6vfr:A (2.79) BS01 CA ? GO:0005509 ... Q9HCL0 32101743
    141185 6vfr:A (2.79) BS02 CA ? GO:0005509 ... Q9HCL0 32101743
    141186 6vfr:A (2.79) BS03 CA ? GO:0005509 ... Q9HCL0 32101743
    141187 6vfr:A (2.79) BS04 CA ? GO:0005509 ... Q9HCL0 32101743
    141188 6vfr:A (2.79) BS05 CA ? GO:0005509 ... Q9HCL0 32101743
    141189 6vfr:A (2.79) BS06 CA ? GO:0005509 ... Q9HCL0 32101743
    141190 6vfr:A (2.79) BS07 CA ? GO:0005509 ... Q9HCL0 32101743
    141191 6vfr:A (2.79) BS08 CA ? GO:0005509 ... Q9HCL0 32101743
    141192 6vfr:A (2.79) BS09 CA ? GO:0005509 ... Q9HCL0 32101743
    141193 6vfr:B (2.79) BS01 CA ? GO:0005509 ... Q9HCL0 32101743
    141194 6vfr:B (2.79) BS02 CA ? GO:0005509 ... Q9HCL0 32101743
    141195 6vfr:B (2.79) BS03 CA ? GO:0005509 ... Q9HCL0 32101743
    141196 6vfr:B (2.79) BS04 CA ? GO:0005509 ... Q9HCL0 32101743
    141197 6vfr:B (2.79) BS05 CA ? GO:0005509 ... Q9HCL0 32101743
    141198 6vfr:B (2.79) BS06 CA ? GO:0005509 ... Q9HCL0 32101743
    141199 6vfr:B (2.79) BS07 CA ? GO:0005509 ... Q9HCL0 32101743
    141200 6vfr:B (2.79) BS08 CA ? GO:0005509 ... Q9HCL0 32101743

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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