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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    140801 6v4o:W (2.8) BS01 CA 3.2.1.18 GO:0004308 ... A0A1S5RAG6 32976769
    140802 6v4p:A (2.8) BS01 CA ? GO:0007155 ... P08514 31969014
    140803 6v4p:A (2.8) BS02 CA ? GO:0007155 ... P08514 31969014
    140804 6v4p:A (2.8) BS03 CA ? GO:0007155 ... P08514 31969014
    140805 6v4p:A (2.8) BS04 CA ? GO:0007155 ... P08514 31969014
    140806 6v4p:B (2.8) BS01 MG ? N/A P05106 31969014
    140807 6v4p:B (2.8) BS02 CA ? N/A P05106 31969014
    140808 6v4p:B (2.8) BS03 CA ? N/A P05106 31969014
    140809 6v4s:A (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    140810 6v4s:B (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    140811 6v4s:C (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    140812 6v4s:D (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    140813 6v4s:E (3.55) BS01 CA ? GO:0004888 ... V4JF97 32482881
    140814 6v4v:A (1.65) BS01 ZN ? N/A V5VFJ0 34311571
    140815 6v4x:H (3.2) BS02 ZN 3.1.27.- GO:0003723 ... Q9UKF6 32029631
    140816 6v4x:H (3.2) BS03 ZN 3.1.27.- GO:0003723 ... Q9UKF6 32029631
    140817 6v53:A (2.2) BS03 MN ? GO:0003723 ... C6H0Y9 N/A
    140818 6v53:A (2.2) BS04 MN ? GO:0003723 ... C6H0Y9 N/A
    140819 6v54:A (1.45) BS01 ZN 3.5.2.6 GO:0008270 ... C6XID6 N/A
    140820 6v54:A (1.45) BS02 ZN 3.5.2.6 GO:0008270 ... C6XID6 N/A
    140821 6v55:A (2.38) BS02 CA ? N/A C6KFA3 31924782
    140822 6v56:A (2.75) BS03 MN ? GO:0003723 ... C6H0Y9 N/A
    140823 6v56:A (2.75) BS04 MN ? GO:0003723 ... C6H0Y9 N/A
    140824 6v5a:A (2.0) BS01 CA ? GO:0006813 ... Q12791 32513714
    140825 6v5b:A (3.7) BS02 ZN 3.1.26.3 GO:0003723 ... Q9NRR4 32220646
    140826 6v5b:A (3.7) BS03 ZN 3.1.26.3 GO:0003723 ... Q9NRR4 32220646
    140827 6v5b:A (3.7) BS04 CA 3.1.26.3 GO:0003723 ... Q9NRR4 32220646
    140828 6v5k:A (2.69) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    140829 6v5l:A (-1.00) BS02 MG 3.6.5.2 GO:0003924 ... P01116 30903639
    140830 6v5m:A (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... C6XID6 N/A
    140831 6v5m:A (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... C6XID6 N/A
    140832 6v61:A (1.58) BS01 ZN 3.5.2.6 GO:0008270 ... C6XID6 N/A
    140833 6v61:A (1.58) BS02 ZN 3.5.2.6 GO:0008270 ... C6XID6 N/A
    140834 6v65:A (2.763) BS01 ZN ? N/A Q7Z699 32697994
    140835 6v65:C (2.763) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32697994
    140836 6v6f:A (2.542) BS01 ZN ? N/A Q7Z699 32697994
    140837 6v6f:C (2.542) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32697994
    140838 6v6m:A (1.39) BS02 MG 3.6.5.2 GO:0000902 ... P61586 33497604
    140839 6v6q:B (2.46) BS02 MG 2.7.10.1 GO:0004672 ... P21802 N/A
    140840 6v6q:C (2.46) BS02 MG 2.7.10.1 GO:0004672 ... P21802 N/A
    140841 6v6u:A (1.16) BS02 MG 3.6.5.2 GO:0000902 ... P61586 33497604
    140842 6v6v:A (1.4) BS02 MG 3.6.5.2 GO:0000902 ... P61586 33497604
    140843 6v6x:A (2.5) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    140844 6v6x:A (2.5) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    140845 6v71:A (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C6XID6 N/A
    140846 6v71:A (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C6XID6 N/A
    140847 6v72:A (1.5) BS01 CA 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    140848 6v72:A (1.5) BS02 CA 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    140849 6v72:A (1.5) BS03 CA 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    140850 6v73:A (2.4) BS01 ZN 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    140851 6v73:A (2.4) BS02 ZN 3.5.2.6 GO:0016787 ... Q2N9N3 N/A
    140852 6v74:A (2.32) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    140853 6v74:B (2.32) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    140854 6v75:A (2.85) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    140855 6v75:C (2.85) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    140856 6v75:D (2.85) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    140857 6v76:B (2.75) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    140858 6v76:C (2.75) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209
    140859 6v77:A (1.75) BS01 ZN ? GO:0003824 ... A0QTY3 N/A
    140860 6v77:B (1.75) BS01 ZN ? GO:0003824 ... A0QTY3 N/A
    140861 6v79:A (2.03952) BS01 ZN ? N/A F8W4B7 34251197
    140862 6v79:B (2.03952) BS01 ZN ? N/A F8W4B7 34251197
    140863 6v7a:A (2.08742) BS01 ZN ? N/A F8W4B7 33214839
    140864 6v7c:A (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140865 6v7c:A (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140866 6v7c:B (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140867 6v7c:B (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140868 6v7c:C (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140869 6v7c:C (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140870 6v7c:D (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140871 6v7c:D (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140872 6v7c:E (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140873 6v7c:E (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140874 6v7c:F (1.8) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140875 6v7c:F (1.8) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140876 6v7d:A (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140877 6v7d:A (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140878 6v7d:B (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140879 6v7d:B (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140880 6v7d:C (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140881 6v7d:C (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140882 6v7d:D (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140883 6v7d:D (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140884 6v7d:E (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140885 6v7d:E (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140886 6v7d:F (1.82) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140887 6v7d:F (1.82) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140888 6v7e:A (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140889 6v7e:A (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140890 6v7e:B (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140891 6v7e:B (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140892 6v7e:C (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140893 6v7e:C (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140894 6v7e:D (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140895 6v7e:D (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140896 6v7e:E (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140897 6v7e:E (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140898 6v7e:F (1.99) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140899 6v7e:F (1.99) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140900 6v7f:A (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140901 6v7f:A (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140902 6v7f:B (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140903 6v7f:B (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140904 6v7f:C (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140905 6v7f:C (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140906 6v7f:D (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140907 6v7f:D (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140908 6v7f:E (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140909 6v7f:E (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140910 6v7f:F (2.02) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140911 6v7f:F (2.02) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32292567
    140912 6v7j:A (2.0) BS02 CA ? N/A P50477 31983433
    140913 6v7j:A (2.0) BS03 CA ? N/A P50477 31983433
    140914 6v7j:C (2.0) BS02 CA ? N/A P50477 31983433
    140915 6v81:A (2.957) BS01 CA ? GO:0009279 ... P76115 32355044
    140916 6v85:A (4.38) BS01 ZN 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... Q88434 32075920
    140917 6v86:A (4.63) BS01 ZN 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... Q88434 32075920
    140918 6v86:A (4.63) BS02 ZN 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-    		 GO:0001172 ... Q88434 32075920
    140919 6v8i:AG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140920 6v8i:AH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140921 6v8i:AI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140922 6v8i:BG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140923 6v8i:BH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140924 6v8i:BI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140925 6v8i:CG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140926 6v8i:CH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140927 6v8i:CI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140928 6v8i:DG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140929 6v8i:DH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140930 6v8i:DI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140931 6v8i:EG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140932 6v8i:EH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140933 6v8i:EI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140934 6v8i:FG (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140935 6v8i:FH (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140936 6v8i:FI (3.7) BS01 FE ? N/A A4ZFC7 32069326
    140937 6v8o:I (3.07) BS02 ZN ? GO:0000785 ... P43609 31886770
    140938 6v8q:A (2.69958) BS01 CA ? GO:0005886 ... P40709 32047135
    140939 6v8r:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    140940 6v8r:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    140941 6v8u:A (2.103) BS03 ZN ? N/A Q86T24 32352758
    140942 6v8u:A (2.103) BS04 ZN ? N/A Q86T24 32352758
    140943 6v8u:A (2.103) BS05 ZN ? N/A Q86T24 32352758
    140944 6v8y:A (1.53) BS01 NA ? GO:0005267 ... Q81HW2 33953928
    140945 6v92:I (20.0) BS02 ZN ? GO:0000785 ... P43609 31886770
    140946 6v93:A (3.1) BS04 CA 2.7.7.7 GO:0000166 ... P14284 32807989
    140947 6v93:A (3.1) BS05 CA 2.7.7.7 GO:0000166 ... P14284 32807989
    140948 6v94:A (1.8) BS02 MG 3.6.5.2 GO:0003924 ... P01112 32673492
    140949 6v95:A (1.78) BS02 MN ? GO:0030246 ... P02872 33135679
    140950 6v95:A (1.78) BS03 CA ? GO:0030246 ... P02872 33135679
    140951 6v95:B (1.78) BS02 MN ? GO:0030246 ... P02872 33135679
    140952 6v95:B (1.78) BS03 CA ? GO:0030246 ... P02872 33135679
    140953 6v95:C (1.78) BS02 MN ? GO:0030246 ... P02872 33135679
    140954 6v95:C (1.78) BS03 CA ? GO:0030246 ... P02872 33135679
    140955 6v95:D (1.78) BS02 MN ? GO:0030246 ... P02872 33135679
    140956 6v95:D (1.78) BS03 CA ? GO:0030246 ... P02872 33135679
    140957 6v98:A (1.8) BS01 CA ? GO:0003674 ... Q9KMN9 32094588
    140958 6v98:A (1.8) BS02 CA ? GO:0003674 ... Q9KMN9 32094588
    140959 6v9e:A (2.4) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    140960 6v9e:A (2.4) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    140961 6v9f:A (1.849) BS02 MG 3.6.5.2 GO:0003924 ... P01112 32673492
    140962 6v9i:R (5.2) BS01 ZN ? GO:0005515 ... Q9WTZ1 32513959
    140963 6v9i:R (5.2) BS02 ZN ? GO:0005515 ... Q9WTZ1 32513959
    140964 6v9i:R (5.2) BS03 ZN ? GO:0005515 ... Q9WTZ1 32513959
    140965 6v9j:A (1.76) BS02 MG 3.6.5.2 GO:0003924 ... P01112 32673492
    140966 6v9k:A (1.9) BS01 MG 2.7.3.9 GO:0003824 ... P08839 32504625
    140967 6v9k:B (1.9) BS01 MG 2.7.3.9 GO:0003824 ... P08839 32504625
    140968 6v9l:A (1.698) BS02 MG 3.6.5.2 GO:0003924 ... P01112 32673492
    140969 6v9m:A (1.648) BS02 MG 3.6.5.2 GO:0003924 ... P01112 32673492
    140970 6v9n:A (1.648) BS02 MG 3.6.5.2 GO:0003924 ... P01112 32673492
    140971 6v9o:A (1.799) BS02 MG 3.6.5.2 GO:0003924 ... P01112 N/A
    140972 6v9p:A (1.93) BS01 ZN N/A N/A N/A 31925391
    140973 6v9p:A (1.93) BS02 ZN N/A N/A N/A 31925391
    140974 6v9q:I (2.9) BS01 ZN N/A N/A N/A 31925391
    140975 6v9q:I (2.9) BS02 ZN N/A N/A N/A 31925391
    140976 6v9q:J (2.9) BS01 ZN N/A N/A N/A 31925391
    140977 6v9v:A (2.6) BS02 CA ? GO:0005216 ... O75762 32641835
    140978 6v9v:B (2.6) BS02 CA ? GO:0005216 ... O75762 32641835
    140979 6v9v:C (2.6) BS02 CA ? GO:0005216 ... O75762 32641835
    140980 6v9v:D (2.6) BS02 CA ? GO:0005216 ... O75762 32641835
    140981 6v9w:A (3.1) BS01 CA ? GO:0005216 ... O75762 32641835
    140982 6v9w:B (3.1) BS01 CA ? GO:0005216 ... O75762 32641835
    140983 6v9w:C (3.1) BS01 CA ? GO:0005216 ... O75762 32641835
    140984 6v9w:D (3.1) BS01 CA ? GO:0005216 ... O75762 32641835
    140985 6vat:A (2.35) BS01 MG ? N/A P40709 33082366
    140986 6vat:B (2.35) BS01 MG ? N/A P40709 33082366
    140987 6vat:B (2.35) BS02 CA ? N/A P40709 33082366
    140988 6vat:C (2.35) BS02 MG ? N/A P40709 33082366
    140989 6vat:C (2.35) BS03 CA ? N/A P40709 33082366
    140990 6vav:A (1.85) BS02 MN ? GO:0030246 ... P02872 33135679
    140991 6vav:A (1.85) BS03 CA ? GO:0030246 ... P02872 33135679
    140992 6vav:B (1.85) BS02 MN ? GO:0030246 ... P02872 33135679
    140993 6vav:B (1.85) BS03 CA ? GO:0030246 ... P02872 33135679
    140994 6vav:D (1.85) BS02 MN ? GO:0030246 ... P02872 33135679
    140995 6vav:D (1.85) BS03 CA ? GO:0030246 ... P02872 33135679
    140996 6vaw:A (1.75) BS02 MN ? GO:0030246 ... P02872 33135679
    140997 6vaw:A (1.75) BS03 CA ? GO:0030246 ... P02872 33135679
    140998 6vaw:B (1.75) BS02 MN ? GO:0030246 ... P02872 33135679
    140999 6vaw:B (1.75) BS03 CA ? GO:0030246 ... P02872 33135679
    141000 6vaw:C (1.75) BS02 MN ? GO:0030246 ... P02872 33135679
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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