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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    140001 6uo1:1V (2.95) BS02 MG ? GO:0003723 ... P60492 31672910
    140002 6uo1:1Y (2.95) BS02 ZN ? GO:0003723 ... Q5SHP9 31672910
    140003 6uo1:1b (2.95) BS02 MG ? GO:0003735 ... P80371 31672910
    140004 6uo1:1e (2.95) BS02 MG ? GO:0003723 ... Q5SHQ5 31672910
    140005 6uo1:1f (2.95) BS02 MG ? GO:0003735 ... Q5SLP8 31672910
    140006 6uo1:1k (2.95) BS02 MG ? GO:0003735 ... P80376 31672910
    140007 6uo1:1l (2.95) BS03 MG ? GO:0000049 ... Q5SHN3 31672910
    140008 6uo1:1m (2.95) BS04 MG ? GO:0000049 ... P80377 31672910
    140009 6uo1:1m (2.95) BS05 MG ? GO:0000049 ... P80377 31672910
    140010 6uo1:1n (2.95) BS02 ZN ? GO:0003735 ... P0DOY6 31672910
    140011 6uo1:1t (2.95) BS02 MG ? GO:0003723 ... P80380 31672910
    140012 6uo1:24 (2.95) BS02 ZN ? GO:0003735 ... Q5SJE1 31672910
    140013 6uo1:25 (2.95) BS02 ZN ? GO:0003735 ... P80339 31672910
    140014 6uo1:26 (2.95) BS02 ZN ? GO:0000049 ... P35871 31672910
    140015 6uo1:29 (2.95) BS02 ZN ? GO:0003735 ... Q5SHR2 31672910
    140016 6uo1:2E (2.95) BS02 MG ? GO:0003735 ... Q5SHN8 31672910
    140017 6uo1:2E (2.95) BS03 MG ? GO:0003735 ... Q5SHN8 31672910
    140018 6uo1:2F (2.95) BS02 MG ? GO:0003735 ... Q5SHN9 31672910
    140019 6uo1:2F (2.95) BS03 MG ? GO:0003735 ... Q5SHN9 31672910
    140020 6uo1:2Y (2.95) BS02 ZN ? GO:0003723 ... Q5SHP9 31672910
    140021 6uo1:2e (2.95) BS02 MG ? GO:0003723 ... Q5SHQ5 31672910
    140022 6uo1:2k (2.95) BS02 MG ? GO:0003735 ... P80376 31672910
    140023 6uo1:2n (2.95) BS02 ZN ? GO:0003735 ... P0DOY6 31672910
    140024 6uo1:2q (2.95) BS02 MG ? GO:0003735 ... P0DOY7 31672910
    140025 6uo1:2t (2.95) BS02 MG ? GO:0003723 ... P80380 31672910
    140026 6uo2:A (1.65002) BS01 ZN ? N/A F8W4B7 31755702
    140027 6uo2:B (1.65002) BS02 ZN ? N/A F8W4B7 31755702
    140028 6uo3:A (1.09) BS01 ZN ? N/A F8W4B7 31755702
    140029 6uo4:A (1.26831) BS01 ZN ? N/A F8W4B7 31755702
    140030 6uo4:B (1.26831) BS02 ZN ? N/A F8W4B7 31755702
    140031 6uo5:A (1.43934) BS02 ZN ? N/A F8W4B7 31755702
    140032 6uo6:A (2.15) BS01 MG 5.4.2.2 GO:0000287 ... P36871 32057119
    140033 6uo6:B (2.15) BS01 MG 5.4.2.2 GO:0000287 ... P36871 32057119
    140034 6uo7:A (1.39501) BS01 ZN ? N/A F8W4B7 31755702
    140035 6uob:A (1.58001) BS02 ZN ? N/A F8W4B7 31755702
    140036 6uob:B (1.58001) BS02 ZN ? N/A F8W4B7 31755702
    140037 6uoc:A (1.40001) BS01 ZN ? N/A F8W4B7 31755702
    140038 6uoi:A (1.953) BS02 FE 4.2.1.2 GO:0004333 ... E9AE57 31743022
    140039 6uoi:B (1.953) BS02 FE 4.2.1.2 GO:0004333 ... E9AE57 31743022
    140040 6uok:A (2.55) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140041 6uok:F (2.55) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140042 6uok:F (2.55) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140043 6uok:F (2.55) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140044 6uol:A (1.936) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140045 6uol:A (1.936) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140046 6uol:A (1.936) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140047 6uol:A (1.936) BS08 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140048 6uom:A (2.05) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140049 6uom:A (2.05) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31892517
    140050 6up4:A (2.4) BS02 MG 3.6.4.13 GO:0003676 ... Q8VHK9 32087197
    140051 6upc:A (2.505) BS01 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    140052 6upc:B (2.505) BS01 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    140053 6upd:A (2.052) BS03 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    140054 6upd:B (2.052) BS03 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    140055 6upe:A (2.244) BS01 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    140056 6upe:B (2.244) BS01 MG 3.1.3.12 GO:0000287 ... E1WGG9 32786412
    140057 6upp:A (1.56) BS02 MG ? N/A Q8DLC7 31852825
    140058 6upp:B (1.56) BS02 MG ? N/A Q8DLC7 31852825
    140059 6upx:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140060 6upx:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140061 6upx:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    140062 6upx:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    140063 6upx:C (3.4) BS01 ZN ? GO:0000428 ... P16370 32284409
    140064 6upx:I (3.4) BS01 ZN ? GO:0000428 ... P27999 32284409
    140065 6upx:I (3.4) BS02 ZN ? GO:0000428 ... P27999 32284409
    140066 6upx:J (3.4) BS01 ZN ? GO:0000428 ... P22139 32284409
    140067 6upx:L (3.4) BS01 ZN ? GO:0000428 ... P40422 32284409
    140068 6upy:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140069 6upy:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140070 6upy:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    140071 6upy:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    140072 6upy:C (3.4) BS01 ZN ? GO:0000428 ... P16370 32284409
    140073 6upy:I (3.4) BS01 ZN ? GO:0000428 ... P27999 32284409
    140074 6upy:I (3.4) BS02 ZN ? GO:0000428 ... P27999 32284409
    140075 6upy:J (3.4) BS01 ZN ? GO:0000428 ... P22139 32284409
    140076 6upy:L (3.4) BS01 ZN ? GO:0000428 ... P40422 32284409
    140077 6upz:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140078 6upz:A (3.1) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140079 6upz:A (3.1) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    140080 6upz:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    140081 6upz:C (3.1) BS01 ZN ? GO:0000428 ... P16370 32284409
    140082 6upz:I (3.1) BS01 ZN ? GO:0000428 ... P27999 32284409
    140083 6upz:I (3.1) BS02 ZN ? GO:0000428 ... P27999 32284409
    140084 6upz:J (3.1) BS01 ZN ? GO:0000428 ... P22139 32284409
    140085 6upz:L (3.1) BS01 ZN ? GO:0000428 ... P40422 32284409
    140086 6uq0:A (3.56) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140087 6uq0:A (3.56) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140088 6uq0:A (3.56) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    140089 6uq0:B (3.56) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    140090 6uq0:C (3.56) BS01 ZN ? GO:0000428 ... P16370 32284409
    140091 6uq0:I (3.56) BS01 ZN ? GO:0000428 ... P27999 32284409
    140092 6uq0:I (3.56) BS02 ZN ? GO:0000428 ... P27999 32284409
    140093 6uq0:J (3.56) BS01 ZN ? GO:0000428 ... P22139 32284409
    140094 6uq0:L (3.56) BS01 ZN ? GO:0000428 ... P40422 32284409
    140095 6uq1:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140096 6uq1:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140097 6uq1:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    140098 6uq1:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    140099 6uq1:C (3.6) BS01 ZN ? GO:0000428 ... P16370 32284409
    140100 6uq1:I (3.6) BS01 ZN ? GO:0000428 ... P27999 32284409
    140101 6uq1:I (3.6) BS02 ZN ? GO:0000428 ... P27999 32284409
    140102 6uq1:J (3.6) BS01 ZN ? GO:0000428 ... P22139 32284409
    140103 6uq1:L (3.6) BS01 ZN ? GO:0000428 ... P40422 32284409
    140104 6uq2:A (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140105 6uq2:A (3.2) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140106 6uq2:A (3.2) BS05 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    140107 6uq2:B (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    140108 6uq2:C (3.2) BS01 ZN ? GO:0000428 ... P16370 32284409
    140109 6uq2:I (3.2) BS01 ZN ? GO:0000428 ... P27999 32284409
    140110 6uq2:I (3.2) BS02 ZN ? GO:0000428 ... P27999 32284409
    140111 6uq2:J (3.2) BS01 ZN ? GO:0000428 ... P22139 32284409
    140112 6uq2:L (3.2) BS01 ZN ? GO:0000428 ... P40422 32284409
    140113 6uq3:A (3.47) BS03 MG 2.7.7.6 GO:0000428 ... P04050 32284409
    140114 6uq3:A (3.47) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140115 6uq3:A (3.47) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 32284409
    140116 6uq3:B (3.47) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 32284409
    140117 6uq3:C (3.47) BS01 ZN ? GO:0000428 ... P16370 32284409
    140118 6uq3:I (3.47) BS01 ZN ? GO:0000428 ... P27999 32284409
    140119 6uq3:I (3.47) BS02 ZN ? GO:0000428 ... P27999 32284409
    140120 6uq3:J (3.47) BS01 ZN ? GO:0000428 ... P22139 32284409
    140121 6uq3:L (3.47) BS01 ZN ? GO:0000428 ... P40422 32284409
    140122 6uqi:A (2.5) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    140123 6uqi:A (2.5) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    140124 6uqk:A (3.77) BS01 ZN ? GO:0000822 ... Q14573 31915246
    140125 6uqk:B (3.77) BS01 ZN ? GO:0000822 ... Q14573 31915246
    140126 6uqk:C (3.77) BS01 ZN ? GO:0000822 ... Q14573 31915246
    140127 6uqk:D (3.77) BS01 ZN ? GO:0000822 ... Q14573 31915246
    140128 6ur9:A (2.1) BS04 CA 2.7.7.7 GO:0000166 ... D9N168 32188786
    140129 6ura:A (2.17) BS02 MG 4.1.1.39 GO:0000287 ... A0A160T9D2 32868887
    140130 6ura:B (2.17) BS03 MG 4.1.1.39 GO:0000287 ... A0A160T9D2 32868887
    140131 6ura:C (2.17) BS02 MG 4.1.1.39 GO:0000287 ... A0A160T9D2 32868887
    140132 6ura:D (2.17) BS03 MG 4.1.1.39 GO:0000287 ... A0A160T9D2 32868887
    140133 6urg:C (3.0) BS01 ZN ? GO:0003676 ... O95639 31810758
    140134 6uro:C (3.6) BS02 ZN ? GO:0003676 ... O95639 31810758
    140135 6uro:C (3.6) BS03 ZN ? GO:0003676 ... O95639 31810758
    140136 6uro:C (3.6) BS04 ZN ? GO:0003676 ... O95639 31810758
    140137 6us5:A (2.25) BS04 MN 2.7.7.7 GO:0000166 ... D9N168 32188786
    140138 6us5:D (2.25) BS04 MN 2.7.7.7 GO:0000166 ... D9N168 32188786
    140139 6usc:A (1.59) BS01 CA ? GO:0001934 ... Q8WWA0 31930911
    140140 6usc:A (1.59) BS02 CA ? GO:0001934 ... Q8WWA0 31930911
    140141 6usc:A (1.59) BS03 CA ? GO:0001934 ... Q8WWA0 31930911
    140142 6usc:B (1.59) BS01 CA ? GO:0001934 ... Q8WWA0 31930911
    140143 6usc:B (1.59) BS02 CA ? GO:0001934 ... Q8WWA0 31930911
    140144 6usc:B (1.59) BS03 CA ? GO:0001934 ... Q8WWA0 31930911
    140145 6usm:B (3.37) BS01 ZN ? N/A Q6TV13 N/A
    140146 6usp:A (3.56) BS03 MG 2.7.7.49 GO:0000781 ... Q0QHL8 32501800
    140147 6usr:A (2.93) BS03 MG 2.7.7.49 GO:0000781 ... Q0QHL8 32501800
    140148 6usr:A (2.93) BS04 MG 2.7.7.49 GO:0000781 ... Q0QHL8 32501800
    140149 6uss:A (2.5) BS01 CA ? N/A A0A081TVR9 32993284
    140150 6uss:B (2.5) BS01 CA ? N/A A0A081TVR9 32993284
    140151 6ust:A (2.6) BS01 CA 3.1.6.1 GO:0004065 ... A0A174CV66 32993284
    140152 6ust:B (2.6) BS01 CA 3.1.6.1 GO:0004065 ... A0A174CV66 32993284
    140153 6ust:C (2.6) BS01 CA 3.1.6.1 GO:0004065 ... A0A174CV66 32993284
    140154 6ust:D (2.6) BS01 CA 3.1.6.1 GO:0004065 ... A0A174CV66 32993284
    140155 6ut3:B (2.95) BS01 MG ? GO:0005524 ... C5A3Z3 33219217
    140156 6ut3:D (2.95) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140157 6ut3:E (2.95) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140158 6ut4:A (3.1) BS02 MG ? GO:0005524 ... C5A3Z3 33219217
    140159 6ut4:B (3.1) BS02 MG ? GO:0005524 ... C5A3Z3 33219217
    140160 6ut4:C (3.1) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140161 6ut4:D (3.1) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140162 6ut4:E (3.1) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140163 6ut4:F (3.1) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140164 6ut5:A (2.44) BS02 MG ? GO:0004519 ... C5A3Z3 33219217
    140165 6ut5:B (2.44) BS02 MG ? GO:0004519 ... C5A3Z3 33219217
    140166 6ut5:C (2.44) BS03 MG ? GO:0004519 ... C5A3Z3 33219217
    140167 6ut5:D (2.44) BS03 MG ? GO:0004519 ... C5A3Z3 33219217
    140168 6ut5:E (2.44) BS03 MG ? GO:0004519 ... C5A3Z3 33219217
    140169 6ut5:F (2.44) BS03 MG ? GO:0004519 ... C5A3Z3 33219217
    140170 6ut6:B (3.28) BS02 MG 3.1.21.- GO:0003677 ... P15005 33219217
    140171 6ut6:C (3.28) BS03 MG 3.1.21.- GO:0003677 ... P15005 33219217
    140172 6ut6:D (3.28) BS03 MG 3.1.21.- GO:0003677 ... P15005 33219217
    140173 6ut6:E (3.28) BS03 MG 3.1.21.- GO:0003677 ... P15005 33219217
    140174 6ut7:A (4.26) BS02 MG ? GO:0005524 ... C5A3Z3 33219217
    140175 6ut7:B (4.26) BS02 MG ? GO:0005524 ... C5A3Z3 33219217
    140176 6ut7:C (4.26) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140177 6ut7:D (4.26) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140178 6ut7:E (4.26) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140179 6ut7:H (4.26) BS02 MG ? GO:0005524 ... C5A3Z3 33219217
    140180 6ut7:I (4.26) BS02 MG ? GO:0005524 ... C5A3Z3 33219217
    140181 6ut7:J (4.26) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140182 6ut7:K (4.26) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140183 6ut7:L (4.26) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140184 6ut8:A (3.68) BS02 MG ? GO:0005524 ... C5A3Z3 33219217
    140185 6ut8:B (3.68) BS02 MG ? GO:0005524 ... C5A3Z3 33219217
    140186 6ut8:C (3.68) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140187 6ut8:D (3.68) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140188 6ut8:E (3.68) BS03 MG ? GO:0005524 ... C5A3Z3 33219217
    140189 6utp:F (3.55) BS01 CO 4.4.1.37 GO:0005524 ... F9UST4 32242052
    140190 6uts:A (3.09) BS01 NI 1.13.11.24 GO:0008127 ... P46852 31609578
    140191 6utu:C (2.85) BS01 CA ? GO:0009306 ... Q00518 31906428
    140192 6utu:C (2.85) BS02 CA ? GO:0009306 ... Q00518 31906428
    140193 6utu:C (2.85) BS03 CA ? GO:0009306 ... Q00518 31906428
    140194 6utu:F (2.85) BS01 CA ? GO:0009306 ... Q00518 31906428
    140195 6utu:F (2.85) BS02 CA ? GO:0009306 ... Q00518 31906428
    140196 6utu:F (2.85) BS03 CA ? GO:0009306 ... Q00518 31906428
    140197 6utu:I (2.85) BS01 CA ? GO:0009306 ... Q00518 31906428
    140198 6utu:I (2.85) BS02 CA ? GO:0009306 ... Q00518 31906428
    140199 6utu:I (2.85) BS03 CA ? GO:0009306 ... Q00518 31906428
    140200 6utv:DDD (3.45) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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