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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    139801 6ucq:20 (3.5) BS04 MG ? GO:0003735 ... P60493 31873307
    139802 6ucq:21 (3.5) BS02 MG ? GO:0003735 ... P60494 31873307
    139803 6ucq:24 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 31873307
    139804 6ucq:25 (3.5) BS02 ZN ? GO:0003735 ... P80339 31873307
    139805 6ucq:26 (3.5) BS02 ZN ? GO:0000049 ... P35871 31873307
    139806 6ucq:28 (3.5) BS02 MG ? GO:0003735 ... Q5SKU1 31873307
    139807 6ucq:29 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 31873307
    139808 6ucq:2D (3.5) BS03 MG ? GO:0002181 ... P60405 31873307
    139809 6ucq:2D (3.5) BS04 MG ? GO:0002181 ... P60405 31873307
    139810 6ucq:2D (3.5) BS05 MG ? GO:0002181 ... P60405 31873307
    139811 6ucq:2D (3.5) BS06 MG ? GO:0002181 ... P60405 31873307
    139812 6ucq:2E (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 31873307
    139813 6ucq:2O (3.5) BS03 MG ? GO:0003735 ... Q5SHP8 31873307
    139814 6ucq:2P (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 31873307
    139815 6ucq:2Q (3.5) BS03 MG ? GO:0000049 ... P60489 31873307
    139816 6ucq:2Q (3.5) BS04 MG ? GO:0000049 ... P60489 31873307
    139817 6ucq:2Q (3.5) BS05 MG ? GO:0000049 ... P60489 31873307
    139818 6ucq:2S (3.5) BS03 MG ? GO:0003735 ... Q5SHQ4 31873307
    139819 6ucq:2X (3.5) BS02 MG ? GO:0000027 ... Q5SHP0 31873307
    139820 6ucq:2Y (3.5) BS02 MG ? GO:0003723 ... Q5SHP9 31873307
    139821 6ucq:2Y (3.5) BS03 ZN ? GO:0003723 ... Q5SHP9 31873307
    139822 6ucq:2Z (3.5) BS03 MG ? GO:0003723 ... Q5SHZ1 31873307
    139823 6ucq:2b (3.5) BS02 MG ? GO:0003735 ... P80371 31873307
    139824 6ucq:2b (3.5) BS03 MG ? GO:0003735 ... P80371 31873307
    139825 6ucq:2d (3.5) BS02 MG ? GO:0003723 ... P80373 31873307
    139826 6ucq:2d (3.5) BS03 MG ? GO:0003723 ... P80373 31873307
    139827 6ucq:2d (3.5) BS05 MG ? GO:0003723 ... P80373 31873307
    139828 6ucq:2g (3.5) BS02 MG ? GO:0000028 ... P17291 31873307
    139829 6ucq:2h (3.5) BS02 MG ? GO:0003735 ... P0DOY9 31873307
    139830 6ucq:2h (3.5) BS03 MG ? GO:0003735 ... P0DOY9 31873307
    139831 6ucq:2i (3.5) BS02 MG ? GO:0000049 ... P80374 31873307
    139832 6ucq:2k (3.5) BS02 MG ? GO:0003735 ... P80376 31873307
    139833 6ucq:2l (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 31873307
    139834 6ucq:2l (3.5) BS03 MG ? GO:0000049 ... Q5SHN3 31873307
    139835 6ucq:2n (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 31873307
    139836 6ucq:2q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 31873307
    139837 6ucq:2q (3.5) BS03 MG ? GO:0003735 ... P0DOY7 31873307
    139838 6ucq:2q (3.5) BS04 MG ? GO:0003735 ... P0DOY7 31873307
    139839 6ucq:2r (3.5) BS02 MG ? GO:0003735 ... Q5SLQ0 31873307
    139840 6ucq:2s (3.5) BS02 MG ? GO:0000028 ... Q5SHP2 31873307
    139841 6ucq:2s (3.5) BS03 MG ? GO:0000028 ... Q5SHP2 31873307
    139842 6ude:A (1.95) BS02 MG 2.7.1.30 GO:0004370 ... A0A077EJ65 N/A
    139843 6ude:B (1.95) BS02 MG 2.7.1.30 GO:0004370 ... A0A077EJ65 N/A
    139844 6ude:C (1.95) BS02 MG 2.7.1.30 GO:0004370 ... A0A077EJ65 N/A
    139845 6ude:D (1.95) BS02 MG 2.7.1.30 GO:0004370 ... A0A077EJ65 N/A
    139846 6ue3:A (1.56) BS02 ZN N/A GO:0006508 ... N/A 32234812
    139847 6ue4:A (2.08) BS01 ZN ? GO:0000920 ... Q9KN86 32393643
    139848 6ue4:B (2.08) BS01 ZN ? GO:0000920 ... Q9KN86 32393643
    139849 6ueb:A (3.3) BS01 ZN 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... P16289 31953264
    139850 6ueb:A (3.3) BS02 ZN 2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... P16289 31953264
    139851 6ueh:A (1.849) BS01 CA N/A GO:0004553 ... N/A 32139511
    139852 6uei:A (2.51) BS01 ZN ? GO:0046872 ... Q7Z2W4 31719195
    139853 6uei:A (2.51) BS02 ZN ? GO:0046872 ... Q7Z2W4 31719195
    139854 6uei:A (2.51) BS03 ZN ? GO:0046872 ... Q7Z2W4 31719195
    139855 6uei:A (2.51) BS04 ZN ? GO:0046872 ... Q7Z2W4 31719195
    139856 6uej:A (2.21) BS02 ZN ? GO:0046872 ... Q7Z2W4 31719195
    139857 6uej:A (2.21) BS03 ZN ? GO:0046872 ... Q7Z2W4 31719195
    139858 6uej:A (2.21) BS04 ZN ? GO:0046872 ... Q7Z2W4 31719195
    139859 6uej:A (2.21) BS05 ZN ? GO:0046872 ... Q7Z2W4 31719195
    139860 6uel:A (1.9) BS01 ZN 6.3.4.16 GO:0000050 ... P31327 32017919
    139861 6uel:B (1.9) BS01 ZN 6.3.4.16 GO:0000050 ... P31327 32017919
    139862 6ufb:A (1.67) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32031797
    139863 6ufc:A (1.325) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32031797
    139864 6ufd:A (1.48) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32031797
    139865 6uff:A (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    139866 6uff:B (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    139867 6uff:C (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    139868 6uff:D (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    139869 6uff:E (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    139870 6uff:F (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    139871 6uff:G (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    139872 6uff:H (2.007) BS02 CA ? GO:0000166 ... Q8YVV8 32181943
    139873 6ufi:A (1.72) BS01 MN 4.1.1.2 GO:0005737 ... O34714 34097877
    139874 6ufi:A (1.72) BS02 MN 4.1.1.2 GO:0005737 ... O34714 34097877
    139875 6ufn:A (2.7) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 31746596
    139876 6ufo:A (2.68) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 31746596
    139877 6ufq:A (2.51) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139878 6ufq:B (2.51) BS02 MG ? GO:0046872 ... A0A161XU12 31615898
    139879 6ufq:C (2.51) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139880 6ufq:D (2.51) BS02 MG ? GO:0046872 ... A0A161XU12 31615898
    139881 6ug0:B (1.83) BS03 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    139882 6ug0:B (1.83) BS04 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    139883 6ug0:D (1.83) BS01 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    139884 6ug0:D (1.83) BS02 FE 1.18.6.1 GO:0005524 ... P07329 32554596
    139885 6ugm:M (3.7) BS03 ZN 2.1.1.354 GO:0042800 ... Q6CIT4 31733991
    139886 6ugn:A (1.406) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    139887 6ugo:A (1.457) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    139888 6ugp:A (1.306) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    139889 6ugq:A (1.305) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    139890 6ugr:A (1.307) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    139891 6ugw:A (2.0) BS03 ZN ? N/A P0DOX5 31650490
    139892 6ugy:A (2.1) BS03 ZN ? N/A P0DOX5 31650490
    139893 6ugz:A (1.306) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    139894 6uh0:A (1.306) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31794211
    139895 6uh5:M (3.5) BS02 ZN 2.1.1.354 GO:0042800 ... Q6CIT4 31733991
    139896 6uhc:A (3.9) BS02 MG ? GO:0003779 ... P61158 32548263
    139897 6uhu:A (2.8) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 31746596
    139898 6uhv:A (2.53) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 31746596
    139899 6ui2:A (2.35) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 31683505
    139900 6ui2:A (2.35) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 31683505
    139901 6ui4:A (2.65) BS01 MG ? GO:0003774 ... I1RCT2 32163521
    139902 6uii:A (2.65) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 31746596
    139903 6uij:A (2.9) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 31746596
    139904 6uil:A (2.85) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 31746596
    139905 6uim:A (2.75) BS02 ZN 3.5.1.48
    3.5.1.62
    GO:0005634 ... F1QCV2 31746596
    139906 6uiq:A (2.3) BS02 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    139907 6uiq:B (2.3) BS02 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    139908 6uir:A (2.639) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31872074
    139909 6uis:A (2.74834) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31872074
    139910 6uis:A (2.74834) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31872074
    139911 6uit:A (2.80607) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31872074
    139912 6uj5:A (1.8) BS01 MG 2.7.1.33 GO:0004594 ... Q04430 N/A
    139913 6uj6:A (2.68) BS01 CR ? GO:0005576 ... P02787 32650146
    139914 6uja:A (3.3) BS01 CA ? GO:0001525 ... P06756 31955848
    139915 6uja:A (3.3) BS02 CA ? GO:0001525 ... P06756 31955848
    139916 6uja:A (3.3) BS03 CA ? GO:0001525 ... P06756 31955848
    139917 6uja:A (3.3) BS04 CA ? GO:0001525 ... P06756 31955848
    139918 6uja:B (3.3) BS01 CA ? GO:0001570 ... P26012 31955848
    139919 6uja:B (3.3) BS02 MG ? GO:0001570 ... P26012 31955848
    139920 6ujb:A (3.51) BS01 CA ? GO:0001525 ... P06756 31955848
    139921 6ujb:A (3.51) BS02 CA ? GO:0001525 ... P06756 31955848
    139922 6ujb:A (3.51) BS03 CA ? GO:0001525 ... P06756 31955848
    139923 6ujb:A (3.51) BS04 CA ? GO:0001525 ... P06756 31955848
    139924 6ujb:B (3.51) BS01 CA ? GO:0001570 ... P26012 31955848
    139925 6ujb:B (3.51) BS02 MG ? GO:0001570 ... P26012 31955848
    139926 6ujc:A (3.56) BS01 CA ? GO:0001525 ... P06756 31955848
    139927 6ujc:A (3.56) BS02 CA ? GO:0001525 ... P06756 31955848
    139928 6ujc:A (3.56) BS03 CA ? GO:0001525 ... P06756 31955848
    139929 6ujc:A (3.56) BS04 CA ? GO:0001525 ... P06756 31955848
    139930 6ujc:B (3.56) BS01 CA ? GO:0001570 ... P26012 31955848
    139931 6ujc:B (3.56) BS02 MG ? GO:0001570 ... P26012 31955848
    139932 6ujd:A (2.6) BS01 ZN 6.1.1.16 GO:0000166 ... A0A1T3F4R2 N/A
    139933 6ujx:A (2.70451) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31872074
    139934 6ujy:A (2.59456) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31872074
    139935 6ujz:A (2.55643) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31872074
    139936 6uk0:A (2.75695) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31872074
    139937 6uk1:B (2.693) BS02 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    139938 6uka:A (2.4) BS02 MG ? GO:0003924 ... P84095 32651375
    139939 6uke:X (1.62) BS03 CA N/A N/A N/A 31879785
    139940 6ukf:X (1.0) BS03 CA N/A N/A N/A 31879785
    139941 6ukh:X (2.82) BS03 CA N/A N/A N/A 31879785
    139942 6uki:X (2.7) BS03 CA N/A N/A N/A 31879785
    139943 6uki:Y (2.7) BS03 CA N/A N/A N/A 31879785
    139944 6ukn:A (3.65) BS01 K ? GO:0005886 ... Q9WVL3 32286222
    139945 6ul5:A (2.23) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 31935327
    139946 6ulb:A (1.75) BS01 CA ? N/A P04278 N/A
    139947 6ulg:G (3.31) BS02 MG 3.6.5.- GO:0000287 ... Q9HB90 31704029
    139948 6ull:A (1.45) BS02 ZN 3.5.1.- GO:0016787 ... P42981 31867856
    139949 6ulm:A (2.15) BS01 CA ? GO:0005509 ... Q12864 33682793
    139950 6ulm:A (2.15) BS02 CA ? GO:0005509 ... Q12864 33682793
    139951 6ulm:A (2.15) BS03 CA ? GO:0005509 ... Q12864 33682793
    139952 6ulm:B (2.15) BS01 CA ? GO:0005509 ... Q12864 33682793
    139953 6ulm:B (2.15) BS02 CA ? GO:0005509 ... Q12864 33682793
    139954 6ulm:B (2.15) BS03 CA ? GO:0005509 ... Q12864 33682793
    139955 6ulw:A (3.4) BS01 CA N/A GO:0031177 ... N/A 32066969
    139956 6ulw:D (3.4) BS01 CA N/A GO:0031177 ... N/A 32066969
    139957 6uml:C (3.58) BS02 ZN ? GO:0005515 ... Q96SW2 32251415
    139958 6umq:A (1.85) BS01 MG 2.1.1.-
    3.1.3.-
    GO:0005515 ... Q9H993 32682077
    139959 6umq:B (1.85) BS01 MG 2.1.1.-
    3.1.3.-
    GO:0005515 ... Q9H993 32682077
    139960 6umt:A (1.986) BS01 MG ? GO:0016020 ... Q15116 31727844
    139961 6unc:A (2.5) BS01 MN 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    139962 6unc:A (2.5) BS02 FE 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    139963 6unc:B (2.5) BS01 MN 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    139964 6unc:B (2.5) BS02 FE 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    139965 6unc:C (2.5) BS01 MN 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    139966 6unc:C (2.5) BS02 FE 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    139967 6unc:D (2.5) BS01 MN 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    139968 6unc:D (2.5) BS02 FE 3.1.4.14 GO:0008770 ... I6YEE1 31886928
    139969 6unp:A (2.3) BS03 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139970 6unp:A (2.3) BS04 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139971 6unp:A (2.3) BS05 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139972 6unp:A (2.3) BS06 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139973 6unp:A (2.3) BS07 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139974 6unp:B (2.3) BS02 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139975 6unp:B (2.3) BS03 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139976 6unp:B (2.3) BS04 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139977 6unp:B (2.3) BS05 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139978 6unp:B (2.3) BS06 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139979 6unp:B (2.3) BS07 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139980 6unp:B (2.3) BS08 MG 2.7.11.30 GO:0004672 ... Q13873 34400635
    139981 6unq:A (2.4) BS02 MG 2.7.11.30 GO:0004672 ... Q04771 34400635
    139982 6unq:A (2.4) BS03 MG 2.7.11.30 GO:0004672 ... Q04771 34400635
    139983 6unq:A (2.4) BS04 MG 2.7.11.30 GO:0004672 ... Q04771 34400635
    139984 6unr:A (2.2) BS02 MG 2.7.11.30 GO:0004672 ... Q04771 34400635
    139985 6unr:A (2.2) BS03 MG 2.7.11.30 GO:0004672 ... Q04771 34400635
    139986 6unr:A (2.2) BS04 MG 2.7.11.30 GO:0004672 ... Q04771 34400635
    139987 6unr:A (2.2) BS05 MG 2.7.11.30 GO:0004672 ... Q04771 34400635
    139988 6unr:A (2.2) BS06 MG 2.7.11.30 GO:0004672 ... Q04771 34400635
    139989 6uo1:14 (2.95) BS02 ZN ? GO:0003735 ... Q5SJE1 31672910
    139990 6uo1:15 (2.95) BS02 ZN ? GO:0003735 ... P80339 31672910
    139991 6uo1:16 (2.95) BS02 ZN ? GO:0000049 ... P35871 31672910
    139992 6uo1:19 (2.95) BS02 ZN ? GO:0003735 ... Q5SHR2 31672910
    139993 6uo1:1F (2.95) BS02 MG ? GO:0003735 ... Q5SHN9 31672910
    139994 6uo1:1F (2.95) BS03 MG ? GO:0003735 ... Q5SHN9 31672910
    139995 6uo1:1G (2.95) BS04 MG ? GO:0000049 ... Q5SHQ0 31672910
    139996 6uo1:1O (2.95) BS03 MG ? GO:0003735 ... Q5SHP8 31672910
    139997 6uo1:1P (2.95) BS02 MG ? GO:0003735 ... Q5SHQ7 31672910
    139998 6uo1:1R (2.95) BS02 MG ? GO:0003735 ... Q9Z9H5 31672910
    139999 6uo1:1R (2.95) BS03 MG ? GO:0003735 ... Q9Z9H5 31672910
    140000 6uo1:1T (2.95) BS03 MG ? GO:0003735 ... P60490 31672910

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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