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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 1bjq:C (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    1202 1bjq:C (2.65) BS02 MN ? GO:0005537 ... P05045 10047489
    1203 1bjq:D (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    1204 1bjq:D (2.65) BS02 MN ? GO:0005537 ... P05045 10047489
    1205 1bjq:E (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    1206 1bjq:E (2.65) BS02 MN ? GO:0005537 ... P05045 10047489
    1207 1bjq:F (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    1208 1bjq:F (2.65) BS02 MN ? GO:0005537 ... P05045 10047489
    1209 1bjq:G (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    1210 1bjq:G (2.65) BS02 MN ? GO:0005537 ... P05045 10047489
    1211 1bjq:H (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    1212 1bjq:H (2.65) BS02 MN ? GO:0005537 ... P05045 10047489
    1213 1bjr:E (2.44) BS02 CA 3.4.21.64 GO:0004252 ... P06873 9741842
    1214 1bjr:E (2.44) BS03 CA 3.4.21.64 GO:0004252 ... P06873 9741842
    1215 1bju:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9836602
    1216 1bjv:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9836602
    1217 1bk0:A (1.3) BS01 FE 1.21.3.1 GO:0005506 ... P05326 9194566
    1218 1bk4:A (2.3) BS01 MG 3.1.3.11 GO:0005737 ... P00637 10089399
    1219 1bk9:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14418 9663694
    1220 1bka:A (2.4) BS01 FE 3.4.21.- GO:0001503 ... P02788 8703903
    1221 1bka:A (2.4) BS02 FE 3.4.21.- GO:0001503 ... P02788 8703903
    1222 1bkc:A (2.0) BS01 ZN 3.4.24.86 GO:0004222 ... P78536 9520379
    1223 1bkc:C (2.0) BS01 ZN 3.4.24.86 GO:0004222 ... P78536 9520379
    1224 1bkc:E (2.0) BS01 ZN 3.4.24.86 GO:0004222 ... P78536 9520379
    1225 1bkc:I (2.0) BS01 ZN 3.4.24.86 GO:0004222 ... P78536 9520379
    1226 1bl3:A (2.0) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 9735293
    1227 1bl3:B (2.0) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 9735293
    1228 1bl3:C (2.0) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 9735293
    1229 1blf:A (2.8) BS02 FE 3.4.21.- GO:0001503 ... P24627 9398529
    1230 1blf:A (2.8) BS03 FE 3.4.21.- GO:0001503 ... P24627 9398529
    1231 1bli:A (1.9) BS01 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    1232 1bli:A (1.9) BS02 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    1233 1bli:A (1.9) BS03 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    1234 1bli:A (1.9) BS04 NA 3.2.1.1 GO:0004553 ... P06278 9551551
    1235 1bll:E (2.4) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8357796
    1236 1bll:E (2.4) BS03 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8357796
    1237 1blx:A (1.9) BS01 CA 2.7.11.22 GO:0000082 ... Q00534 9751051
    1238 1blz:A (1.45) BS01 FE 1.21.3.1 GO:0005506 ... P05326 9194566
    1239 1bm6:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9760240
    1240 1bm6:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9760240
    1241 1bm6:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9760240
    1242 1bm6:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9760240
    1243 1bma:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 7604279
    1244 1bmc:A (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 7588620
    1245 1bmo:A (3.1) BS01 CA ? GO:0005509 ... P09486 9233787
    1246 1bmo:A (3.1) BS02 CA ? GO:0005509 ... P09486 9233787
    1247 1bmo:B (3.1) BS01 CA ? GO:0005509 ... P09486 9233787
    1248 1bmo:B (3.1) BS02 CA ? GO:0005509 ... P09486 9233787
    1249 1bn1:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1250 1bn3:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1251 1bn4:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1252 1bn5:A (1.8) BS01 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    1253 1bn5:A (1.8) BS02 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    1254 1bn8:A (1.8) BS01 CA 4.2.2.2 GO:0030570 ... P39116 7634076
    1255 1bnl:A (2.9) BS01 ZN ? N/A P39060 9724722
    1256 1bnl:B (2.9) BS01 ZN ? N/A P39060 9724722
    1257 1bnl:C (2.9) BS01 ZN ? N/A P39060 9724722
    1258 1bnl:D (2.9) BS01 ZN ? N/A P39060 9724722
    1259 1bnm:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1260 1bnn:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1261 1bnq:A (2.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1262 1bnt:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1263 1bnu:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1264 1bnv:A (2.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1265 1bnw:A (2.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9865942
    1266 1boa:A (1.8) BS01 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    1267 1boa:A (1.8) BS02 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    1268 1bof:A (2.2) BS01 MG ? GO:0000287 ... P10824 9772163
    1269 1bor:A (-1.00) BS01 ZN 2.3.2.- N/A P29590 7729428
    1270 1bor:A (-1.00) BS02 ZN 2.3.2.- N/A P29590 7729428
    1271 1bou:B (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    1272 1bou:D (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    1273 1bow:A (2.7) BS01 MN ? N/A P39075 10025401
    1274 1bp2:A (1.7) BS01 CA 3.1.1.4 GO:0002227 ... P00593 7265241
    1275 1bp3:A (2.9) BS01 ZN ? GO:0002092 ... P01241 7984244
    1276 1bp3:B (2.9) BS01 ZN ? GO:0004896 ... P16471 7984244
    1277 1bpm:A (2.9) BS01 MG 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    1278 1bpm:A (2.9) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    1279 1bpn:A (2.9) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    1280 1bpn:A (2.9) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    1281 1bpq:A (1.8) BS01 CA 3.1.1.4 GO:0002227 ... P00593 1751497
    1282 1bpy:A (2.2) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    1283 1bpy:A (2.2) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    1284 1bq5:A (2.05) BS01 CU 1.7.2.1 GO:0005507 ... O68601 9792907
    1285 1bq5:A (2.05) BS02 CU 1.7.2.1 GO:0005507 ... O68601 9792907
    1286 1bq8:A (1.1) BS01 FE ? GO:0005506 ... P24297 N/A
    1287 1bq9:A (1.2) BS01 FE ? GO:0005506 ... P24297 N/A
    1288 1bqb:A (1.72) BS01 ZN 3.4.24.29 GO:0004222 ... P81177 9753696
    1289 1bqb:A (1.72) BS02 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    1290 1bqb:A (1.72) BS03 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    1291 1bqb:A (1.72) BS04 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    1292 1bqk:A (1.35) BS01 CU ? GO:0005507 ... P19567 10364229
    1293 1bqo:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    1294 1bqo:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    1295 1bqo:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    1296 1bqo:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    1297 1bqo:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    1298 1bqo:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    1299 1bqo:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    1300 1bqo:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    1301 1bqo:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    1302 1bqo:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    1303 1bqp:A (2.1) BS01 CA ? GO:0030246 ... P02867 N/A
    1304 1bqp:A (2.1) BS02 MN ? GO:0030246 ... P02867 N/A
    1305 1bqp:C (2.1) BS02 CA ? GO:0030246 ... P02867 N/A
    1306 1bqp:C (2.1) BS04 MN ? GO:0030246 ... P02867 N/A
    1307 1bqq:M (2.75) BS01 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    1308 1bqq:M (2.75) BS02 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    1309 1bqq:M (2.75) BS03 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    1310 1bqq:M (2.75) BS04 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    1311 1bqr:A (1.6) BS01 CU ? GO:0005507 ... P19567 10364229
    1312 1br1:A (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1313 1br1:C (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1314 1br1:E (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1315 1br1:G (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1316 1br2:A (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1317 1br2:B (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1318 1br2:C (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1319 1br2:D (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1320 1br2:E (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1321 1br2:F (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1322 1br4:A (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1323 1br4:C (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1324 1br4:E (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1325 1br4:G (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    1326 1bra:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8478942
    1327 1brf:A (0.95) BS01 FE ? GO:0005506 ... P24297 N/A
    1328 1brg:C (2.2) BS01 ZN 3.1.27.- GO:0003723 ... P00648 15299323
    1329 1brh:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    1330 1brj:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    1331 1brk:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    1332 1brw:A (2.1) BS02 CA 2.4.2.2 GO:0004645 ... P77836 9817849
    1333 1brw:B (2.1) BS02 CA 2.4.2.2 GO:0004645 ... P77836 9817849
    1334 1bs1:A (1.8) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9865950
    1335 1bs3:A (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    1336 1bs3:B (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    1337 1bs4:A (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1338 1bs4:B (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1339 1bs4:C (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1340 1bs5:A (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1341 1bs5:B (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1342 1bs5:C (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1343 1bs8:A (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1344 1bs8:B (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1345 1bs8:C (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1346 1bsi:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 10091666
    1347 1bsj:A (3.0) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 10200158
    1348 1bsk:A (3.0) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 10200158
    1349 1bsm:A (1.35) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    1350 1bsm:B (1.35) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    1351 1bss:A (2.15) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9811827
    1352 1bss:A (2.15) BS04 CA 3.1.21.4 GO:0003677 ... P04390 9811827
    1353 1bsu:A (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10074946
    1354 1bsu:B (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10074946
    1355 1bsw:A (1.95) BS01 ZN 3.4.24.- GO:0004222 ... Q9PW35 9784374
    1356 1bsw:A (1.95) BS02 CA 3.4.24.- GO:0004222 ... Q9PW35 9784374
    1357 1bsz:A (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1358 1bsz:B (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1359 1bsz:C (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    1360 1bt0:A (1.7) BS01 ZN ? N/A Q9SHE7 9857029
    1361 1bt7:A (-1.00) BS01 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 10366511
    1362 1bt8:A (1.85) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    1363 1bt8:B (1.85) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    1364 1btg:B (2.5) BS01 ZN ? GO:0005102 ... P01139 8201620
    1365 1btg:C (2.5) BS01 ZN ? GO:0005102 ... P01139 8201620
    1366 1btk:A (1.6) BS01 ZN 2.7.10.2 GO:0035556 ... Q06187 9218782
    1367 1btk:B (1.6) BS01 ZN 2.7.10.2 GO:0035556 ... Q06187 9218782
    1368 1bto:A (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    1369 1bto:A (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    1370 1bto:B (2.0) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    1371 1bto:B (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    1372 1bto:C (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    1373 1bto:C (2.0) BS03 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    1374 1bto:D (2.0) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    1375 1bto:D (2.0) BS03 ZN 1.1.1.1 GO:0004022 ... P00327 9003191
    1376 1btp:A (2.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7548040
    1377 1btu:A (1.6) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9860865
    1378 1btw:A (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7599119
    1379 1bty:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7599119
    1380 1btz:A (2.0) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7599119
    1381 1bu3:A (1.65) BS01 CA ? GO:0005509 ... P56503 10739249
    1382 1bu3:A (1.65) BS02 CA ? GO:0005509 ... P56503 10739249
    1383 1bud:A (1.9) BS01 ZN 3.4.24.- GO:0004222 ... Q9PW35 9784374
    1384 1bud:A (1.9) BS02 CA 3.4.24.- GO:0004222 ... Q9PW35 9784374
    1385 1bug:A (2.7) BS01 CU 1.10.3.1 GO:0004097 ... Q9ZP19 9846879
    1386 1bug:A (2.7) BS02 CU 1.10.3.1 GO:0004097 ... Q9ZP19 9846879
    1387 1bug:B (2.7) BS01 CU 1.10.3.1 GO:0004097 ... Q9ZP19 9846879
    1388 1bug:B (2.7) BS02 CU 1.10.3.1 GO:0004097 ... Q9ZP19 9846879
    1389 1buv:M (2.75) BS01 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    1390 1buv:M (2.75) BS02 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    1391 1buv:M (2.75) BS03 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    1392 1buv:M (2.75) BS04 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    1393 1bv3:A (1.85) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 10550681
    1394 1bva:A (1.89) BS01 MN 1.11.1.5 GO:0004601 ... P00431 9836578
    1395 1bvi:D (1.9) BS01 CA 4.6.1.24 GO:0001411 ... P00651 10211818
    1396 1bvn:P (2.5) BS01 CA 3.2.1.1 GO:0003824 ... P00690 7897663
    1397 1bvt:A (1.85) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 9761898
    1398 1bvt:A (1.85) BS03 ZN 3.5.2.6 GO:0008270 ... P04190 9761898
    1399 1bwn:A (2.1) BS01 ZN 2.7.10.2 GO:0035556 ... Q06187 10196129
    1400 1bwn:B (2.1) BS01 ZN 2.7.10.2 GO:0035556 ... Q06187 10196129

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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