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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    139601 6u5r:C (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    139602 6u5r:D (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    139603 6u5r:E (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    139604 6u5r:F (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    139605 6u5r:G (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    139606 6u5r:H (3.6) BS01 CA ? GO:0005886 ... O27564 32269335
    139607 6u61:A (2.29) BS02 ZN ? N/A P25440 33046654
    139608 6u61:B (2.29) BS02 ZN ? N/A P25440 33046654
    139609 6u62:B (3.18) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 31601708
    139610 6u66:A (0.99) BS01 CA ? N/A Q15848 31915248
    139611 6u66:A (0.99) BS02 CA ? N/A Q15848 31915248
    139612 6u66:B (0.99) BS01 CA ? N/A Q15848 31915248
    139613 6u66:B (0.99) BS02 CA ? N/A Q15848 31915248
    139614 6u66:C (0.99) BS01 CA ? N/A Q15848 31915248
    139615 6u66:C (0.99) BS02 CA ? N/A Q15848 31915248
    139616 6u6b:A (3.108) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 32039434
    139617 6u6b:A (3.108) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 32039434
    139618 6u6x:A (2.58) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139619 6u6x:B (2.58) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139620 6u6x:C (2.58) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139621 6u6x:D (2.58) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139622 6u6y:A (2.47) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139623 6u6y:B (2.47) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139624 6u6y:C (2.47) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139625 6u6y:D (2.47) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139626 6u6z:A (2.1) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139627 6u6z:B (2.1) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139628 6u6z:C (2.1) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139629 6u6z:D (2.1) BS03 ZN 3.1.5.- N/A Q9Y3Z3 33531504
    139630 6u75:A (2.63) BS01 ZN 2.3.2.- GO:0008270 ... Q12216 34585421
    139631 6u75:B (2.63) BS01 ZN 2.3.2.- GO:0008270 ... Q12216 34585421
    139632 6u7b:A (2.09) BS01 MG 2.7.7.-
    2.7.7.85    		 GO:0001730 ... D7Y2H2 31932165
    139633 6u7b:C (2.09) BS01 MG 2.7.7.-
    2.7.7.85    		 GO:0001730 ... D7Y2H2 31932165
    139634 6u7c:A (2.44) BS02 MG 2.7.11.15 GO:0001664 ... P25098 32234810
    139635 6u7e:A (3.0) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 31650956
    139636 6u7e:B (3.0) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 31650956
    139637 6u7f:A (2.75) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 31650956
    139638 6u7f:B (2.75) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 31650956
    139639 6u7g:A (2.35) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 31650956
    139640 6u7g:B (2.35) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 31650956
    139641 6u7j:A (2.2) BS01 CA 3.2.1.31 GO:0004553 ... A0A1C5YG41 31636122
    139642 6u7j:C (2.2) BS01 CA 3.2.1.31 GO:0004553 ... A0A1C5YG41 31636122
    139643 6u7j:D (2.2) BS01 CA 3.2.1.31 GO:0004553 ... A0A1C5YG41 31636122
    139644 6u7l:A (2.75) BS01 CA 4.2.1.42 GO:0008198 ... P39829 31811683
    139645 6u7l:B (2.75) BS01 CA 4.2.1.42 GO:0008198 ... P39829 31811683
    139646 6u7l:C (2.75) BS01 CA 4.2.1.42 GO:0008198 ... P39829 31811683
    139647 6u7l:D (2.75) BS01 CA 4.2.1.42 GO:0008198 ... P39829 31811683
    139648 6u7t:A (2.0) BS04 CA 3.2.2.31 GO:0000701 ... P83847 31829624
    139649 6u7t:A (2.0) BS05 CA 3.2.2.31 GO:0000701 ... P83847 31829624
    139650 6u8q:A (4.67) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32061936
    139651 6u8q:C (4.67) BS05 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32061936
    139652 6u8q:C (4.67) BS06 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32061936
    139653 6u9d:A (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139654 6u9d:B (3.194) BS04 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139655 6u9d:E (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139656 6u9d:F (3.194) BS04 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139657 6u9d:I (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139658 6u9d:J (3.194) BS04 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139659 6u9d:M (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139660 6u9d:N (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139661 6u9d:Q (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139662 6u9d:U (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139663 6u9d:V (3.194) BS04 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    139664 6u9h:A (3.8) BS01 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    139665 6u9h:B (3.8) BS02 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    139666 6u9h:H (3.8) BS01 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    139667 6u9h:I (3.8) BS02 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    139668 6u9h:L (3.8) BS01 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    139669 6u9h:M (3.8) BS02 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    139670 6u9h:P (3.8) BS01 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    139671 6u9h:Q (3.8) BS02 MG 2.2.1.6 GO:0000287 ... P17597 32640464
    139672 6u9k:A (2.0) BS01 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 32551023
    139673 6u9k:B (2.0) BS01 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 32551023
    139674 6u9m:A (2.05) BS01 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 32551023
    139675 6u9m:B (2.05) BS01 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 32551023
    139676 6u9n:A (1.95) BS02 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 32551023
    139677 6u9n:B (1.95) BS02 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 32551023
    139678 6u9q:A (1.83) BS03 ZN ? N/A Q9H165 N/A
    139679 6u9q:A (1.83) BS04 ZN ? N/A Q9H165 N/A
    139680 6u9q:A (1.83) BS05 ZN ? N/A Q9H165 N/A
    139681 6u9r:A (2.1) BS01 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 32551023
    139682 6u9r:B (2.1) BS01 ZN 2.1.1.-
    2.1.1.364    		 N/A Q03164 32551023
    139683 6u9v:A (2.9) BS03 ZN ? GO:0000165 ... Q64663 31587896
    139684 6u9v:A (2.9) BS04 ZN ? GO:0000165 ... Q64663 31587896
    139685 6u9v:B (2.9) BS04 ZN ? GO:0000165 ... Q64663 31587896
    139686 6u9v:B (2.9) BS05 ZN ? GO:0000165 ... Q64663 31587896
    139687 6u9v:C (2.9) BS04 ZN ? GO:0000165 ... Q64663 31587896
    139688 6u9v:C (2.9) BS05 ZN ? GO:0000165 ... Q64663 31587896
    139689 6u9w:A (3.3) BS01 ZN ? GO:0000165 ... Q64663 31587896
    139690 6u9w:A (3.3) BS02 ZN ? GO:0000165 ... Q64663 31587896
    139691 6u9w:B (3.3) BS02 ZN ? GO:0000165 ... Q64663 31587896
    139692 6u9w:B (3.3) BS03 ZN ? GO:0000165 ... Q64663 31587896
    139693 6u9w:C (3.3) BS03 ZN ? GO:0000165 ... Q64663 31587896
    139694 6u9w:C (3.3) BS04 ZN ? GO:0000165 ... Q64663 31587896
    139695 6uaf:A (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 N/A
    139696 6uaf:A (1.9) BS03 ZN 3.5.2.6 GO:0008270 ... B2FTM1 N/A
    139697 6uah:A (1.98) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 N/A
    139698 6uah:A (1.98) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 N/A
    139699 6uas:A (1.91) BS03 ZN N/A N/A N/A 32451508
    139700 6uat:A (1.9) BS03 ZN N/A N/A N/A 32451508
    139701 6uau:A (1.9) BS03 ZN N/A N/A N/A 32451508
    139702 6uax:A (1.3) BS01 CA ? GO:0009277 ... A9GMG4 32451508
    139703 6uax:B (1.3) BS01 CA ? GO:0009277 ... A9GMG4 32451508
    139704 6ubn:A (2.15) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139705 6ubn:B (2.15) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139706 6ubn:C (2.15) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139707 6ubn:D (2.15) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139708 6ubr:A (1.96) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139709 6ubr:B (1.96) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139710 6ubr:C (1.96) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139711 6ubr:D (1.96) BS02 MG ? GO:0046872 ... A0A161XU12 31615898
    139712 6ubv:A (2.7) BS01 CA ? N/A P11657 N/A
    139713 6ubv:B (2.7) BS01 CA ? N/A P11657 N/A
    139714 6ubv:C (2.7) BS01 CA ? N/A P11657 N/A
    139715 6ubv:D (2.7) BS01 CA ? N/A P11657 N/A
    139716 6ubz:A (1.83) BS02 MG ? GO:0046872 ... A0A161XU12 31615898
    139717 6ubz:B (1.83) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139718 6ubz:C (1.83) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139719 6ubz:D (1.83) BS02 MG ? GO:0046872 ... A0A161XU12 31615898
    139720 6uc1:A (2.19) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139721 6uc1:B (2.19) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139722 6uc1:C (2.19) BS03 MG ? GO:0046872 ... A0A161XU12 31615898
    139723 6uc1:D (2.19) BS01 MG ? GO:0046872 ... A0A161XU12 31615898
    139724 6uca:A (3.103) BS02 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139725 6uca:A (3.103) BS03 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139726 6uca:A (3.103) BS04 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139727 6uca:A (3.103) BS05 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139728 6uca:A (3.103) BS06 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139729 6uca:A (3.103) BS07 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139730 6uca:B (3.103) BS02 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139731 6uca:B (3.103) BS03 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139732 6uca:B (3.103) BS04 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139733 6uca:B (3.103) BS05 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139734 6uca:B (3.103) BS06 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139735 6uca:B (3.103) BS07 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139736 6uca:C (3.103) BS02 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139737 6uca:C (3.103) BS03 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139738 6uca:C (3.103) BS04 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139739 6uca:C (3.103) BS05 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139740 6uca:C (3.103) BS06 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139741 6uca:C (3.103) BS07 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139742 6uca:D (3.103) BS02 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139743 6uca:D (3.103) BS03 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139744 6uca:D (3.103) BS04 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139745 6uca:D (3.103) BS05 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139746 6uca:D (3.103) BS06 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139747 6uca:D (3.103) BS07 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139748 6uca:E (3.103) BS02 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139749 6uca:E (3.103) BS03 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139750 6uca:E (3.103) BS04 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139751 6uca:E (3.103) BS05 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139752 6uca:E (3.103) BS06 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139753 6uca:E (3.103) BS07 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139754 6uca:F (3.103) BS02 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139755 6uca:F (3.103) BS03 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139756 6uca:F (3.103) BS04 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139757 6uca:F (3.103) BS05 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139758 6uca:F (3.103) BS06 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139759 6uca:F (3.103) BS07 ZN 2.1.1.- GO:0003676 ... Q9H5U6 31695039
    139760 6uco:A (-1.00) BS01 ZN ? N/A P08047 33733039
    139761 6ucp:A (-1.00) BS01 ZN ? N/A P08047 33733039
    139762 6ucq:10 (3.5) BS03 MG ? GO:0003735 ... P60493 31873307
    139763 6ucq:11 (3.5) BS02 MG ? GO:0003735 ... P60494 31873307
    139764 6ucq:11 (3.5) BS03 MG ? GO:0003735 ... P60494 31873307
    139765 6ucq:14 (3.5) BS02 ZN ? GO:0003735 ... Q5SJE1 31873307
    139766 6ucq:15 (3.5) BS02 ZN ? GO:0003735 ... P80339 31873307
    139767 6ucq:16 (3.5) BS02 ZN ? GO:0000049 ... P35871 31873307
    139768 6ucq:19 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 31873307
    139769 6ucq:1D (3.5) BS02 MG ? GO:0002181 ... P60405 31873307
    139770 6ucq:1D (3.5) BS03 MG ? GO:0002181 ... P60405 31873307
    139771 6ucq:1D (3.5) BS04 MG ? GO:0002181 ... P60405 31873307
    139772 6ucq:1E (3.5) BS02 MG ? GO:0003735 ... Q5SHN8 31873307
    139773 6ucq:1E (3.5) BS03 MG ? GO:0003735 ... Q5SHN8 31873307
    139774 6ucq:1N (3.5) BS02 MG ? GO:0003729 ... P60488 31873307
    139775 6ucq:1O (3.5) BS03 MG ? GO:0003735 ... Q5SHP8 31873307
    139776 6ucq:1P (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 31873307
    139777 6ucq:1P (3.5) BS03 MG ? GO:0003735 ... Q5SHQ7 31873307
    139778 6ucq:1Q (3.5) BS03 MG ? GO:0000049 ... P60489 31873307
    139779 6ucq:1T (3.5) BS03 MG ? GO:0003735 ... P60490 31873307
    139780 6ucq:1Y (3.5) BS02 MG ? GO:0003723 ... Q5SHP9 31873307
    139781 6ucq:1Y (3.5) BS03 ZN ? GO:0003723 ... Q5SHP9 31873307
    139782 6ucq:1b (3.5) BS02 MG ? GO:0003735 ... P80371 31873307
    139783 6ucq:1b (3.5) BS03 MG ? GO:0003735 ... P80371 31873307
    139784 6ucq:1b (3.5) BS04 MG ? GO:0003735 ... P80371 31873307
    139785 6ucq:1b (3.5) BS05 MG ? GO:0003735 ... P80371 31873307
    139786 6ucq:1b (3.5) BS06 MG ? GO:0003735 ... P80371 31873307
    139787 6ucq:1b (3.5) BS07 MG ? GO:0003735 ... P80371 31873307
    139788 6ucq:1b (3.5) BS08 MG ? GO:0003735 ... P80371 31873307
    139789 6ucq:1b (3.5) BS09 MG ? GO:0003735 ... P80371 31873307
    139790 6ucq:1d (3.5) BS03 MG ? GO:0003723 ... P80373 31873307
    139791 6ucq:1e (3.5) BS02 MG ? GO:0003723 ... Q5SHQ5 31873307
    139792 6ucq:1e (3.5) BS03 MG ? GO:0003723 ... Q5SHQ5 31873307
    139793 6ucq:1m (3.5) BS03 MG ? GO:0000049 ... P80377 31873307
    139794 6ucq:1n (3.5) BS02 MG ? GO:0003735 ... P0DOY6 31873307
    139795 6ucq:1n (3.5) BS03 MG ? GO:0003735 ... P0DOY6 31873307
    139796 6ucq:1n (3.5) BS04 ZN ? GO:0003735 ... P0DOY6 31873307
    139797 6ucq:1p (3.5) BS02 MG ? GO:0003735 ... Q5SJH3 31873307
    139798 6ucq:1s (3.5) BS02 MG ? GO:0000028 ... Q5SHP2 31873307
    139799 6ucq:1v (3.5) BS03 MG ? GO:0003735 ... Q5SHN5
    Q5SLQ1    		 31873307
    139800 6ucq:20 (3.5) BS03 MG ? GO:0003735 ... P60493 31873307
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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