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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    138801 6tly:A (1.8) BS02 ZN ? N/A A0A0S4IKF4 34081090
    138802 6tly:A (1.8) BS03 ZN ? N/A A0A0S4IKF4 34081090
    138803 6tm2:A (2.95) BS01 CA ? N/A Q02817 33031746
    138804 6tm2:A (2.95) BS02 CA ? N/A Q02817 33031746
    138805 6tm2:B (2.95) BS01 CA ? N/A Q02817 33031746
    138806 6tm2:B (2.95) BS02 CA ? N/A Q02817 33031746
    138807 6tm2:C (2.95) BS01 CA ? N/A Q02817 33031746
    138808 6tm2:D (2.95) BS01 CA ? N/A Q02817 33031746
    138809 6tm2:E (2.95) BS01 CA ? N/A Q02817 33031746
    138810 6tm2:E (2.95) BS02 CA ? N/A Q02817 33031746
    138811 6tm2:F (2.95) BS01 CA ? N/A Q02817 33031746
    138812 6tm2:F (2.95) BS02 CA ? N/A Q02817 33031746
    138813 6tm4:AAA (1.89) BS01 ZN ? GO:0000166 ... A0A022MRT4 31903677
    138814 6tm4:AAA (1.89) BS02 MG ? GO:0000166 ... A0A022MRT4 31903677
    138815 6tm4:BBB (1.89) BS02 ZN ? GO:0000166 ... A0A022MRT4 31903677
    138816 6tm4:BBB (1.89) BS03 MG ? GO:0000166 ... A0A022MRT4 31903677
    138817 6tm5:B (3.9) BS01 ZN ? GO:0000278 ... Q9NYG5 32307883
    138818 6tm5:B (3.9) BS02 ZN ? GO:0000278 ... Q9NYG5 32307883
    138819 6tm6:A (1.63) BS01 CA ? N/A Q02817 33031746
    138820 6tm6:A (1.63) BS02 CA ? N/A Q02817 33031746
    138821 6tm9:A (1.07) BS02 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138822 6tm9:A (1.07) BS03 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138823 6tma:A (1.5) BS01 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138824 6tma:A (1.5) BS02 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138825 6tma:B (1.5) BS01 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138826 6tma:B (1.5) BS02 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138827 6tmb:A (1.5) BS01 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138828 6tmb:A (1.5) BS02 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138829 6tmb:B (1.5) BS02 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138830 6tmb:B (1.5) BS03 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138831 6tmc:A (1.4) BS02 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138832 6tmc:A (1.4) BS03 ZN 3.5.2.6 N/A Q9K2N0 32631568
    138833 6tmf:Q (2.8) BS02 ZN ? GO:0003723 ... A0A218NZW1 32064661
    138834 6tmf:W (2.8) BS01 ZN ? N/A A0A218P055 32064661
    138835 6tmf:W (2.8) BS02 ZN ? N/A A0A218P055 32064661
    138836 6tmf:Y (2.8) BS02 ZN ? GO:0000028 ... A0A218NZS1 32064661
    138837 6tmf:d (2.8) BS05 MG ? GO:0005506 ... Q980K5 32064661
    138838 6tmf:d (2.8) BS07 MG ? GO:0005506 ... Q980K5 32064661
    138839 6tmn:E (1.6) BS02 CA 3.4.24.27 GO:0004222 ... P00800 3810156
    138840 6tmn:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 3810156
    138841 6tmn:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 3810156
    138842 6tmn:E (1.6) BS05 CA 3.4.24.27 GO:0004222 ... P00800 3810156
    138843 6tmn:E (1.6) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 3810156
    138844 6tmp:AAA (2.076) BS01 MG 2.7.11.2 GO:0004672 ... Q15119 N/A
    138845 6tmt:A (4.03) BS01 MG ? GO:0005524 ... Q2Z0T5 32339190
    138846 6tmt:D (4.03) BS01 MG ? GO:0005524 ... Q2Z0T5 32339190
    138847 6tmt:F (4.03) BS01 MG ? GO:0005524 ... Q2Z0T5 32339190
    138848 6tmt:G (4.03) BS02 MG ? GO:0005524 ... Q2Z0T5 32339190
    138849 6tn1:AAA (0.98) BS02 MG 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 32496218
    138850 6tn1:AAA (0.98) BS03 MG 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 32496218
    138851 6tn1:AAA (0.98) BS04 MG 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 32496218
    138852 6tn1:AAA (0.98) BS05 MG 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 32496218
    138853 6tn1:AAA (0.98) BS06 MG 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 32496218
    138854 6tn1:AAA (0.98) BS07 MG 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 32496218
    138855 6tn1:AAA (0.98) BS08 MG 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 32496218
    138856 6tn1:AAA (0.98) BS09 MG 2.4.1.-
    3.2.1.-
    3.2.1.45
    3.2.1.46
    GO:0004336 ... P04062 32496218
    138857 6tnh:B (2.21) BS03 MG 6.3.4.25 GO:0000166 ... G3FFN6 33926955
    138858 6tnj:A (1.85) BS01 CA ? N/A B2RHG5 33495563
    138859 6tnj:A (1.85) BS02 CA ? N/A B2RHG5 33495563
    138860 6tnk:A (1.9) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    138861 6tnk:A (1.9) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138862 6tnk:A (1.9) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138863 6tnk:A (1.9) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138864 6tnk:A (1.9) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138865 6tnk:A (1.9) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138866 6tnn:W (3.07) BS02 MG ? GO:0002181 ... P42919 32991829
    138867 6tnn:p (3.07) BS02 ZN ? GO:0003735 ... O34687 32991829
    138868 6tnn:q (3.07) BS02 ZN ? GO:0003735 ... P56849 32991829
    138869 6tnn:t (3.07) BS02 ZN ? GO:0003735 ... P20278 32991829
    138870 6tnt:B (3.78) BS01 ZN ? GO:0000278 ... Q9NYG5 33789095
    138871 6tnu:AF (3.1) BS03 ZN ? GO:0000448 ... P49166 32299921
    138872 6tnu:AO (3.1) BS02 ZN ? GO:0003735 ... P0CH08 32299921
    138873 6tnu:AP (3.1) BS02 ZN ? GO:0002181 ... P0CX27 32299921
    138874 6tnu:AT (3.1) BS02 ZN ? GO:0002181 ... P0CX25 32299921
    138875 6tnu:BN (3.1) BS02 ZN ? GO:0002181 ... P87262 32299921
    138876 6tnu:M (3.1) BS02 ZN ? GO:0002181 ... P41057 32299921
    138877 6tnu:N (3.1) BS02 ZN ? GO:0003735 ... P05759 32299921
    138878 6to1:A (1.8) BS01 MG ? N/A B2RHG5 33495563
    138879 6to1:A (1.8) BS02 CA ? N/A B2RHG5 33495563
    138880 6to5:AAAA (2.38) BS01 MG ? GO:0003700 ... Q94CL7 33452263
    138881 6to9:AAAA (2.45) BS01 MG ? GO:0003700 ... Q94CL7 33452263
    138882 6toy:A (1.95) BS01 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138883 6toy:A (1.95) BS02 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138884 6toz:A (1.94) BS05 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138885 6toz:A (1.94) BS06 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138886 6tp0:A (2.04) BS03 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138887 6tp0:A (2.04) BS04 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138888 6tp1:A (1.94) BS04 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138889 6tp1:A (1.94) BS05 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138890 6tp2:A (1.94) BS02 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138891 6tp2:A (1.94) BS03 CA 3.2.1.1 GO:0004553 ... I3P686 33058974
    138892 6tp5:A (2.25) BS02 FE2 1.14.11.29 GO:0005506 ... Q9NXG6 33334883
    138893 6tp5:A (2.25) BS03 CA 1.14.11.29 GO:0005506 ... Q9NXG6 33334883
    138894 6tp5:A (2.25) BS04 CA 1.14.11.29 GO:0005506 ... Q9NXG6 33334883
    138895 6tp5:B (2.25) BS02 FE2 1.14.11.29 GO:0005506 ... Q9NXG6 33334883
    138896 6tp5:B (2.25) BS03 CA 1.14.11.29 GO:0005506 ... Q9NXG6 33334883
    138897 6tp5:B (2.25) BS04 CA 1.14.11.29 GO:0005506 ... Q9NXG6 33334883
    138898 6tpq:p (3.07) BS02 ZN ? GO:0003735 ... O34687 32991829
    138899 6tpq:q (3.07) BS02 ZN ? GO:0003735 ... P56849 32991829
    138900 6tpq:t (3.07) BS02 ZN ? GO:0003735 ... P20278 32991829
    138901 6tps:A (3.54) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 32139698
    138902 6tps:A (3.54) BS03 MG 2.7.7.6 GO:0000428 ... P10964 32139698
    138903 6tps:B (3.54) BS03 ZN 2.7.7.6 GO:0000428 ... P22138 32139698
    138904 6tps:I (3.54) BS01 ZN ? GO:0000122 ... P32529 32139698
    138905 6tps:J (3.54) BS01 ZN ? GO:0000428 ... P22139 32139698
    138906 6tps:L (3.54) BS01 ZN ? GO:0000428 ... P40422 32139698
    138907 6tps:Q (3.54) BS03 ZN ? GO:0000120 ... P40992 32139698
    138908 6tqe:A (4.3) BS02 MG 7.6.2.- GO:0005524 ... P9WQI9 32296172
    138909 6tqe:B (4.3) BS03 MG 7.6.2.- GO:0005524 ... P9WQI9 32296172
    138910 6tqf:A (3.5) BS01 MG 7.6.2.- GO:0005524 ... P9WQI9 32296172
    138911 6tqf:B (3.5) BS01 MG 7.6.2.- GO:0005524 ... P9WQI9 32296172
    138912 6tqh:A (3.4) BS03 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32188856
    138913 6tqh:B (3.4) BS03 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32188856
    138914 6tqm:A (3.8) BS01 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32188856
    138915 6tqm:B (3.8) BS01 FE 1.1.1.1
    1.2.1.10
    GO:0004022 ... P0A9Q7 32188856
    138916 6tqn:S (3.8) BS01 MG 3.1.3.25 GO:0000287 ... P0ADG4 32871103
    138917 6tqn:T (3.8) BS01 MG 3.1.3.25 GO:0000287 ... P0ADG4 32871103
    138918 6tqn:Y (3.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32871103
    138919 6tqn:Y (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32871103
    138920 6tqn:Y (3.8) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32871103
    138921 6tqo:S (3.8) BS01 MG 3.1.3.25 GO:0000287 ... P0ADG4 32871103
    138922 6tqo:T (3.8) BS02 MG 3.1.3.25 GO:0000287 ... P0ADG4 32871103
    138923 6tqo:Y (3.8) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32871103
    138924 6tqo:Y (3.8) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32871103
    138925 6tqo:Y (3.8) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 32871103
    138926 6tqv:A (1.35001) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138927 6tqv:A (1.35001) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138928 6tqv:B (1.35001) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138929 6tqv:B (1.35001) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138930 6tqw:A (1.55) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138931 6tqw:A (1.55) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138932 6tqw:B (1.55) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138933 6tqw:B (1.55) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138934 6tqy:A (1.77) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138935 6tqy:A (1.77) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138936 6tqy:B (1.77) BS01 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138937 6tqy:B (1.77) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138938 6tqz:A (2.09933) BS01 FE2 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138939 6tqz:A (2.09933) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138940 6tqz:B (2.09933) BS01 FE2 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138941 6tqz:B (2.09933) BS02 MN 1.17.4.1 GO:0004748 ... Q81TB4 32296998
    138942 6tr3:A (1.7) BS02 MG 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138943 6tr3:A (1.7) BS03 MG 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138944 6tr3:A (1.7) BS04 MG 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138945 6tr3:A (1.7) BS05 CA 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138946 6tr3:A (1.7) BS06 CA 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138947 6tr4:A (1.45) BS03 MG 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138948 6tr4:A (1.45) BS04 MG 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138949 6tr4:A (1.45) BS05 CA 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138950 6tr4:A (1.45) BS06 CA 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138951 6tr4:A (1.45) BS07 CA 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138952 6tr4:B (1.45) BS02 MG 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138953 6tr4:B (1.45) BS03 MG 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138954 6tr4:B (1.45) BS04 CA 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138955 6tr4:B (1.45) BS05 CA 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138956 6tr4:B (1.45) BS06 CA 3.2.1.187 GO:0004560 ... A0A6N3BKT0 32333083
    138957 6tr8:A (-1.00) BS01 ZN 1.8.4.12 GO:0005737 ... Q6NGV7 31992594
    138958 6tra:B (2.85) BS09 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    138959 6tra:L (2.85) BS05 CA ? GO:0009522 ... Q8DGB4 N/A
    138960 6trc:0 (2.98) BS06 CA ? GO:0009522 ... Q8DGB4 N/A
    138961 6trc:2 (2.98) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    138962 6trc:B (2.98) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    138963 6trc:L (2.98) BS04 CA ? GO:0009522 ... Q8DGB4 N/A
    138964 6trc:b (2.98) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    138965 6trc:l (2.98) BS05 CA ? GO:0009522 ... Q8DGB4 N/A
    138966 6trd:0 (3.16) BS04 CA ? GO:0009522 ... Q8DGB4 N/A
    138967 6trd:2 (3.16) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    138968 6trd:B (3.16) BS09 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    138969 6trd:L (3.16) BS04 CA ? GO:0009522 ... Q8DGB4 N/A
    138970 6trd:b (3.16) BS08 CA 1.97.1.12 GO:0000287 ... P0A407 N/A
    138971 6trd:l (3.16) BS05 CA ? GO:0009522 ... Q8DGB4 N/A
    138972 6trf:A (4.106) BS02 CA ? GO:0003980 ... G0SB58 33352114
    138973 6trk:A (1.6) BS01 ZN ? N/A P43215 33013833
    138974 6trk:B (1.6) BS01 ZN ? N/A P43215 33013833
    138975 6trz:AAA (2.02) BS02 FE ? GO:0005506 ... P02791 32027764
    138976 6trz:AAA (2.02) BS03 FE ? GO:0005506 ... P02791 32027764
    138977 6trz:AAA (2.02) BS04 FE ? GO:0005506 ... P02791 32027764
    138978 6trz:AAA (2.02) BS05 FE ? GO:0005506 ... P02791 32027764
    138979 6ts0:AAA (2.2) BS01 FE ? GO:0005506 ... P02792 32027764
    138980 6ts0:AAA (2.2) BS02 FE ? GO:0005506 ... P02792 32027764
    138981 6ts1:AAA (2.2) BS02 FE ? GO:0005506 ... P02792 32027764
    138982 6ts1:AAA (2.2) BS03 FE ? GO:0005506 ... P02792 32027764
    138983 6ts1:AAA (2.2) BS04 FE ? GO:0005506 ... P02792 32027764
    138984 6ts1:AAA (2.2) BS05 FE ? GO:0005506 ... P02792 32027764
    138985 6ts1:AAA (2.2) BS06 FE ? GO:0005506 ... P02792 32027764
    138986 6ts2:A (5.74) BS01 CA ? GO:0003980 ... G0SB58 33352114
    138987 6ts2:B (5.74) BS01 CA ? GO:0003980 ... G0SB58 33352114
    138988 6ts2:C (5.74) BS01 CA ? GO:0003980 ... G0SB58 33352114
    138989 6ts2:D (5.74) BS01 CA ? GO:0003980 ... G0SB58 33352114
    138990 6tsa:AAA (2.18) BS01 FE ? GO:0005506 ... P02792 32027764
    138991 6tsa:AAA (2.18) BS02 FE ? GO:0005506 ... P02792 32027764
    138992 6tsa:AAA (2.18) BS03 FE ? GO:0005506 ... P02792 32027764
    138993 6tsa:AAA (2.18) BS04 FE ? GO:0005506 ... P02792 32027764
    138994 6tsa:AAA (2.18) BS05 FE ? GO:0005506 ... P02792 32027764
    138995 6tsa:AAA (2.18) BS06 FE ? GO:0005506 ... P02792 32027764
    138996 6tsa:AAA (2.18) BS07 FE ? GO:0005506 ... P02792 32027764
    138997 6tsa:AAA (2.18) BS08 FE ? GO:0005506 ... P02792 32027764
    138998 6tsa:AAA (2.18) BS09 FE ? GO:0005506 ... P02792 32027764
    138999 6tsa:AAA (2.18) BS10 FE ? GO:0005506 ... P02792 32027764
    139000 6tsd:111 (1.81) BS02 CA 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... V9VEF3 32845119

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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