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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    138401 6t26:A (2.265) BS03 MG ? GO:0004035 ... Q93P54 33102813
    138402 6t26:A (2.265) BS05 MG ? GO:0004035 ... Q93P54 33102813
    138403 6t26:A (2.265) BS06 MG ? GO:0004035 ... Q93P54 33102813
    138404 6t26:B (2.265) BS01 ZN ? GO:0004035 ... Q93P54 33102813
    138405 6t26:B (2.265) BS02 ZN ? GO:0004035 ... Q93P54 33102813
    138406 6t26:B (2.265) BS03 MG ? GO:0004035 ... Q93P54 33102813
    138407 6t26:B (2.265) BS05 MG ? GO:0004035 ... Q93P54 33102813
    138408 6t26:B (2.265) BS06 MG ? GO:0004035 ... Q93P54 33102813
    138409 6t2a:A (2.0) BS01 ZN 3.1.13.- N/A P19239 N/A
    138410 6t2a:A (2.0) BS02 MN 3.1.13.- N/A P19239 N/A
    138411 6t2a:B (2.0) BS01 ZN 3.1.13.- N/A P19239 N/A
    138412 6t2a:B (2.0) BS02 MN 3.1.13.- N/A P19239 N/A
    138413 6t2n:AAA (2.7) BS01 CA ? GO:0004553 ... A0A2N8IRP0 32782292
    138414 6t2n:BBB (2.7) BS01 CA ? GO:0004553 ... A0A2N8IRP0 32782292
    138415 6t2o:AAA (2.05) BS01 CA N/A GO:0004553 ... N/A 32782292
    138416 6t2o:BBB (2.05) BS01 CA N/A GO:0004553 ... N/A 32782292
    138417 6t2p:AAA (2.1) BS01 CA N/A GO:0004553 ... N/A 32782292
    138418 6t2p:BBB (2.1) BS01 CA N/A GO:0004553 ... N/A 32782292
    138419 6t2q:AAA (2.0) BS02 CA N/A GO:0004553 ... N/A 32782292
    138420 6t2q:BBB (2.0) BS02 CA N/A GO:0004553 ... N/A 32782292
    138421 6t35:A (1.75) BS02 ZN 3.5.2.6 GO:0008800 ... P00811 35486701
    138422 6t3w:A (1.82) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... P03313 34985963
    138423 6t4d:A (2.14) BS01 ZN ? N/A Q8IJ93 33296386
    138424 6t4n:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32971003
    138425 6t4o:A (1.133) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32971003
    138426 6t4p:A (1.75) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32971003
    138427 6t4q:LA (2.6) BS03 MG ? GO:0002181 ... P0CX45 31858614
    138428 6t4q:LA (2.6) BS04 MG ? GO:0002181 ... P0CX45 31858614
    138429 6t4q:LB (2.6) BS02 MG ? GO:0000027 ... P14126 31858614
    138430 6t4q:LN (2.6) BS03 MG ? GO:0002181 ... P05748 31858614
    138431 6t4q:Le (2.6) BS02 MG ? GO:0002181 ... P38061 31858614
    138432 6t4q:Lg (2.6) BS02 MG ? GO:0002181 ... P87262 31858614
    138433 6t4q:Lj (2.6) BS03 ZN ? GO:0000448 ... P49166 31858614
    138434 6t4q:Lm (2.6) BS02 ZN ? GO:0003735 ... P0CH08 31858614
    138435 6t4q:Lo (2.6) BS03 ZN ? GO:0002181 ... P0CX27 31858614
    138436 6t4q:Lp (2.6) BS02 ZN ? GO:0002181 ... P0CX25 31858614
    138437 6t4q:SF (2.6) BS04 MG ? GO:0000028 ... A0A1L4AA68 31858614
    138438 6t4q:Sd (2.6) BS02 ZN ? GO:0002181 ... P41057 31858614
    138439 6t4q:Sf (2.6) BS02 ZN ? GO:0003735 ... P05759 31858614
    138440 6t58:A (3.1) BS01 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138441 6t58:A (3.1) BS02 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138442 6t58:A (3.1) BS03 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138443 6t58:A (3.1) BS04 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138444 6t58:A (3.1) BS05 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138445 6t58:A (3.1) BS06 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138446 6t58:A (3.1) BS07 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138447 6t58:A (3.1) BS08 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138448 6t58:A (3.1) BS09 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138449 6t58:A (3.1) BS10 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138450 6t58:B (3.1) BS01 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138451 6t58:B (3.1) BS02 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138452 6t58:B (3.1) BS03 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138453 6t58:B (3.1) BS04 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138454 6t58:B (3.1) BS05 CA ? GO:0001525 ... P04637
    P07355
    P26447    		 32442400
    138455 6t59:g3 (3.11) BS02 ZN ? GO:0003735 ... G1TXG5 31727855
    138456 6t59:g3 (3.11) BS03 MG ? GO:0003735 ... G1TXG5 31727855
    138457 6t59:j3 (3.11) BS03 ZN ? GO:0003723 ... U3KPD5 31727855
    138458 6t59:m3 (3.11) BS02 ZN N/A GO:0003735 ... N/A 31727855
    138459 6t59:o3 (3.11) BS02 ZN ? GO:0003735 ... G1T040 31727855
    138460 6t59:p3 (3.11) BS02 ZN ? GO:0003735 ... G1SY53 31727855
    138461 6t5c:A (1.22) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32971003
    138462 6t5j:A (1.6) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 32690945
    138463 6t5j:B (1.6) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 32690945
    138464 6t5k:C (1.33) BS01 ZN 3.5.2.6 GO:0008270 ... L0FY79 32464640
    138465 6t5k:C (1.33) BS02 ZN 3.5.2.6 GO:0008270 ... L0FY79 32464640
    138466 6t5l:A (2.17) BS01 ZN N/A N/A N/A 32464640
    138467 6t5l:A (2.17) BS02 ZN N/A N/A N/A 32464640
    138468 6t5l:A (2.17) BS03 MG N/A N/A N/A 32464640
    138469 6t5l:B (2.17) BS01 ZN N/A N/A N/A 32464640
    138470 6t5l:B (2.17) BS02 ZN N/A N/A N/A 32464640
    138471 6t5p:A (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 32971003
    138472 6t5p:B (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 32971003
    138473 6t5p:C (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 32971003
    138474 6t5p:D (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 32971003
    138475 6t5q:A (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 32971003
    138476 6t5q:B (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 32971003
    138477 6t5q:C (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 32971003
    138478 6t5q:D (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 32971003
    138479 6t5t:A (1.7003) BS03 MG ? GO:0003676 ... O28951 N/A
    138480 6t5t:A (1.7003) BS04 MG ? GO:0003676 ... O28951 N/A
    138481 6t5t:A (1.7003) BS05 MG ? GO:0003676 ... O28951 N/A
    138482 6t5w:A (1.13) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32011145
    138483 6t5z:A (1.6) BS01 CU ? GO:0046872 ... Q7N4I5 31903721
    138484 6t5z:B (1.6) BS01 CU ? GO:0046872 ... Q7N4I5 31903721
    138485 6t5z:C (1.6) BS01 CU ? GO:0046872 ... Q7N4I5 31903721
    138486 6t69:A (2.5) BS01 ZN 2.1.1.43 N/A A0A0F7VBC6 33296386
    138487 6t6l:A (1.757) BS01 MN 3.1.13.- N/A P19239 N/A
    138488 6t6l:A (1.757) BS02 ZN 3.1.13.- N/A P19239 N/A
    138489 6t6l:B (1.757) BS01 MN 3.1.13.- N/A P19239 N/A
    138490 6t6l:B (1.757) BS02 ZN 3.1.13.- N/A P19239 N/A
    138491 6t6l:C (1.757) BS01 MN 3.1.13.- N/A P19239 N/A
    138492 6t6l:C (1.757) BS02 ZN 3.1.13.- N/A P19239 N/A
    138493 6t6r:A (1.67) BS01 ZN 3.4.11.- GO:0001525 ... Q9NZ08 32109056
    138494 6t6v:A (4.5) BS03 CA N/A GO:0004129 ... N/A 32431824
    138495 6t72:A (3.7) BS04 CA ? N/A P35828 31883796
    138496 6t72:A (3.7) BS05 CA ? N/A P35828 31883796
    138497 6t72:A (3.7) BS06 CA ? N/A P35828 31883796
    138498 6t7f:A (2.58) BS01 ZN 2.3.2.33 N/A O75592 32747811
    138499 6t7f:A (2.58) BS02 ZN 2.3.2.33 N/A O75592 32747811
    138500 6t7f:A (2.58) BS03 ZN 2.3.2.33 N/A O75592 32747811
    138501 6t7f:A (2.58) BS04 ZN 2.3.2.33 N/A O75592 32747811
    138502 6t7f:A (2.58) BS05 ZN 2.3.2.33 N/A O75592 32747811
    138503 6t7f:A (2.58) BS06 ZN 2.3.2.33 N/A O75592 32747811
    138504 6t7n:AAAA (1.9) BS01 MN ? GO:0004659 ... Q8WS26 N/A
    138505 6t7n:AAAA (1.9) BS02 MN ? GO:0004659 ... Q8WS26 N/A
    138506 6t7u:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32505851
    138507 6t81:A (0.98) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32971003
    138508 6t8b:C (3.65) BS04 MG ? GO:0000166 ... Q9I0M3 32513722
    138509 6t8e:A (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138510 6t8e:A (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138511 6t8e:B (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138512 6t8e:B (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138513 6t8e:C (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138514 6t8e:C (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138515 6t8e:D (1.86) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138516 6t8e:D (1.86) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138517 6t8f:A (2.0) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138518 6t8f:A (2.0) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138519 6t8f:B (2.0) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138520 6t8f:B (2.0) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138521 6t8f:C (2.0) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138522 6t8f:C (2.0) BS03 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138523 6t8f:D (2.0) BS01 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138524 6t8f:D (2.0) BS02 CA 5.3.1.5 GO:0005975 ... Q9P8C9 31938040
    138525 6t8h:A (3.77) BS01 FE 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 32221299
    138526 6t8h:A (3.77) BS02 ZN 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 32221299
    138527 6t8h:B (3.77) BS03 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 32221299
    138528 6t8h:B (3.77) BS04 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 32221299
    138529 6t8h:B (3.77) BS05 ZN 2.7.7.7
    3.1.11.1    		 GO:0003677 ... Q9V2F4 32221299
    138530 6t8v:BBB (2.29) BS01 ZN 3.4.21.47 GO:0004252 ... P00751 32073845
    138531 6t8w:BBB (1.7) BS01 ZN 3.4.21.47 GO:0004252 ... P00751 32073845
    138532 6t9l:K (3.6) BS01 ZN 3.4.19.12 GO:0000124 ... P50102 31969703
    138533 6t9l:K (3.6) BS02 ZN 3.4.19.12 GO:0000124 ... P50102 31969703
    138534 6t9l:K (3.6) BS03 ZN 3.4.19.12 GO:0000124 ... P50102 31969703
    138535 6t9l:K (3.6) BS04 ZN 3.4.19.12 GO:0000124 ... P50102 31969703
    138536 6t9l:K (3.6) BS05 ZN 3.4.19.12 GO:0000124 ... P50102 31969703
    138537 6t9l:M (3.6) BS01 ZN ? GO:0000124 ... Q03067 31969703
    138538 6t9l:N (3.6) BS01 ZN ? GO:0000124 ... P53165 31969703
    138539 6t9u:A (1.06751) BS03 CA 3.4.21.4 GO:0004252 ... P00760 N/A
    138540 6t9v:A (1.12643) BS02 CA 3.4.21.4 GO:0004252 ... P00760 N/A
    138541 6t9y:A (1.92) BS02 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    138542 6t9y:A (1.92) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138543 6t9y:A (1.92) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138544 6t9y:A (1.92) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138545 6t9y:A (1.92) BS06 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    138546 6t9z:A (1.12) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32505851
    138547 6ta3:A (3.8) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 32084356
    138548 6ta3:B (3.8) BS02 MG ? GO:0000226 ... P02554 32084356
    138549 6ta4:A (6.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 32084356
    138550 6ta4:B (6.1) BS02 MG ? GO:0000226 ... P02554 32084356
    138551 6ta4:K (6.1) BS02 MG ? GO:0003777 ... P52732 32084356
    138552 6taa:A (2.1) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 1930835
    138553 6taa:A (2.1) BS02 CA 3.2.1.1 GO:0004556 ... P0C1B3 1930835
    138554 6tax:A (3.2) BS02 MG 2.3.2.-
    2.3.2.27
    3.6.4.-    		 GO:0004842 ... E9Q555 32573437
    138555 6tax:A (3.2) BS03 ZN 2.3.2.-
    2.3.2.27
    3.6.4.-    		 GO:0004842 ... E9Q555 32573437
    138556 6tax:A (3.2) BS04 ZN 2.3.2.-
    2.3.2.27
    3.6.4.-    		 GO:0004842 ... E9Q555 32573437
    138557 6tay:A (3.2) BS02 MG 2.3.2.-
    2.3.2.27
    3.6.4.-    		 GO:0004842 ... E9Q555 32573437
    138558 6tay:A (3.2) BS03 ZN 2.3.2.-
    2.3.2.27
    3.6.4.-    		 GO:0004842 ... E9Q555 32573437
    138559 6tay:A (3.2) BS04 ZN 2.3.2.-
    2.3.2.27
    3.6.4.-    		 GO:0004842 ... E9Q555 32573437
    138560 6tb3:AF (2.8) BS03 ZN ? GO:0000448 ... P49166 32299921
    138561 6tb3:AO (2.8) BS02 ZN ? GO:0003735 ... P0CH08 32299921
    138562 6tb3:AP (2.8) BS02 ZN ? GO:0002181 ... P0CX27 32299921
    138563 6tb3:AT (2.8) BS02 ZN ? GO:0002181 ... P0CX25 32299921
    138564 6tb3:AW (2.8) BS03 MG ? GO:0002181 ... P0CX45 32299921
    138565 6tb3:AW (2.8) BS04 MG ? GO:0002181 ... P0CX45 32299921
    138566 6tb3:B (2.8) BS02 MG N/A GO:0003723 ... N/A 32299921
    138567 6tb3:BA (2.8) BS02 MG ? GO:0000027 ... P14126 32299921
    138568 6tb3:BG (2.8) BS02 MG ? GO:0002181 ... P38061 32299921
    138569 6tb3:BN (2.8) BS02 ZN ? GO:0002181 ... P87262 32299921
    138570 6tb3:BN (2.8) BS03 MG ? GO:0002181 ... P87262 32299921
    138571 6tb3:M (2.8) BS02 ZN ? GO:0002181 ... P41057 32299921
    138572 6tb3:N (2.8) BS02 ZN ? GO:0003735 ... P05759 32299921
    138573 6tb3:S (2.8) BS02 MG ? GO:0002181 ... P0CX35 32299921
    138574 6tb5:A (1.83) BS01 CA 1.16.-.- GO:0008199 ... Q9RZN1 N/A
    138575 6tb5:A (1.83) BS02 CA 1.16.-.- GO:0008199 ... Q9RZN1 N/A
    138576 6tbq:A (1.72) BS01 CU ? N/A Q2U8Y3 N/A
    138577 6tbq:A (1.72) BS02 ZN ? N/A Q2U8Y3 N/A
    138578 6tbq:A (1.72) BS03 ZN ? N/A Q2U8Y3 N/A
    138579 6tbr:A (1.7) BS01 ZN ? N/A Q2U8Y3 N/A
    138580 6tbr:A (1.7) BS02 ZN ? N/A Q2U8Y3 N/A
    138581 6tbr:A (1.7) BS03 ZN ? N/A Q2U8Y3 N/A
    138582 6tbr:A (1.7) BS04 ZN ? N/A Q2U8Y3 N/A
    138583 6tbr:A (1.7) BS05 ZN ? N/A Q2U8Y3 N/A
    138584 6tbr:B (1.7) BS01 ZN ? N/A Q2U8Y3 N/A
    138585 6tbr:B (1.7) BS02 ZN ? N/A Q2U8Y3 N/A
    138586 6tbr:B (1.7) BS03 ZN ? N/A Q2U8Y3 N/A
    138587 6tbr:B (1.7) BS04 ZN ? N/A Q2U8Y3 N/A
    138588 6tbr:B (1.7) BS05 ZN ? N/A Q2U8Y3 N/A
    138589 6tbv:L031 (2.7) BS02 MG ? GO:0000027 ... P60438 32094585
    138590 6tbv:L151 (2.7) BS02 MG ? GO:0002181 ... P02413 32094585
    138591 6tbv:L311 (2.7) BS02 ZN ? GO:0002181 ... P0A7M9 32094585
    138592 6tbv:L361 (2.7) BS02 ZN ? GO:0002181 ... P0A7Q6 32094585
    138593 6tbv:S021 (2.7) BS02 ZN ? GO:0000028 ... P0A7V0 32094585
    138594 6tbz:A (1.782) BS03 ZN ? GO:0005667 ... Q56I99 33510867
    138595 6tc3:L031 (2.7) BS02 MG ? GO:0000027 ... P60438 32094585
    138596 6tc3:L151 (2.7) BS02 MG ? GO:0002181 ... P02413 32094585
    138597 6tc3:L311 (2.7) BS02 ZN ? GO:0002181 ... P0A7M9 32094585
    138598 6tc3:L361 (2.7) BS02 ZN ? GO:0002181 ... P0A7Q6 32094585
    138599 6tc3:S021 (2.7) BS02 ZN ? GO:0000028 ... P0A7V0 32094585
    138600 6tc4:A (2.0) BS01 ZN ? N/A Q2U8Y3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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