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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    138201 6suw:T (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138202 6suw:U (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138203 6suw:U (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138204 6suw:V (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138205 6suw:W (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138206 6suw:X (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138207 6suw:X (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138208 6suw:Y (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138209 6suw:Z (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138210 6suw:Z (2.66) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138211 6suw:Z (2.66) BS03 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138212 6suw:a (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138213 6suw:b (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138214 6suw:c (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138215 6suw:d (2.66) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138216 6sux:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138217 6sv0:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138218 6sv1:A (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138219 6sv1:B (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138220 6sv1:C (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138221 6sv1:D (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138222 6sv1:E (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138223 6sv1:F (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138224 6sv1:G (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138225 6sv1:H (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138226 6sv1:H (2.19) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138227 6sv1:I (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138228 6sv1:J (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138229 6sv1:K (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138230 6sv1:L (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138231 6sv1:M (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138232 6sv1:N (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138233 6sv1:O (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138234 6sv1:P (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138235 6sv1:Q (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138236 6sv1:Q (2.19) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138237 6sv1:R (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138238 6sv1:S (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138239 6sv1:T (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138240 6sv1:T (2.19) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138241 6sv1:U (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138242 6sv1:V (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138243 6sv1:W (2.19) BS01 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138244 6sv1:W (2.19) BS02 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138245 6sv1:X (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138246 6sv1:Y (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138247 6sv1:Z (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138248 6sv1:a (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138249 6sv1:b (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138250 6sv1:b (2.19) BS02 CA 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138251 6sv1:c (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138252 6sv1:d (2.19) BS01 FE 1.16.3.1 GO:0004322 ... Q2RVS1 32878987
    138253 6sv6:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138254 6sv8:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138255 6sv9:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138256 6svb:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138257 6svd:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138258 6svg:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138259 6svi:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138260 6svj:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138261 6svm:A (2.481) BS04 MG 2.6.1.16 GO:0004360 ... Q06210 32019926
    138262 6svm:B (2.481) BS03 MG 2.6.1.16 GO:0004360 ... Q06210 32019926
    138263 6svn:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138264 6svp:A (2.531) BS02 MG 2.6.1.16 GO:0004360 ... Q06210 32019926
    138265 6svp:B (2.531) BS02 MG 2.6.1.16 GO:0004360 ... Q06210 32019926
    138266 6svr:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138267 6svu:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138268 6svv:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138269 6svw:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138270 6svx:A (1.16) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138271 6svy:A (2.6) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 32337993
    138272 6svz:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138273 6sw0:A (1.15) BS01 CA 3.4.21.4 GO:0004175 ... P00760 31848402
    138274 6sw9:7 (4.2) BS05 MG 3.6.5.3 GO:0000049 ... Q980A5 32029867
    138275 6sw9:C (4.2) BS01 ZN ? N/A G8ZFK7 32029867
    138276 6sw9:C (4.2) BS02 ZN ? N/A G8ZFK7 32029867
    138277 6sw9:F (4.2) BS02 ZN ? GO:0003723 ... Q9V1V5 32029867
    138278 6sw9:P (4.2) BS02 ZN ? GO:0003723 ... P62012 32029867
    138279 6sw9:R (4.2) BS02 ZN ? GO:0003735 ... Q9V1U5 32029867
    138280 6sw9:W (4.2) BS02 ZN ? GO:0000028 ... Q9UXZ3 32029867
    138281 6swa:h (3.1) BS03 ZN ? GO:0003735 ... Q9D823 33357414
    138282 6swa:m (3.1) BS02 ZN ? GO:0003735 ... Q5M9P1 33357414
    138283 6swc:C (3.3) BS01 ZN ? N/A G8ZFK7 32029867
    138284 6swc:C (3.3) BS02 ZN ? N/A G8ZFK7 32029867
    138285 6swc:F (3.3) BS02 ZN ? GO:0003723 ... Q9V1V5 32029867
    138286 6swc:P (3.3) BS02 ZN ? GO:0003723 ... P62012 32029867
    138287 6swc:R (3.3) BS02 ZN ? GO:0003735 ... Q9V1U5 32029867
    138288 6swc:W (3.3) BS02 ZN ? GO:0000028 ... Q9UXZ3 32029867
    138289 6swd:C (3.2) BS01 ZN ? N/A G8ZFK7 32029867
    138290 6swd:C (3.2) BS02 ZN ? N/A G8ZFK7 32029867
    138291 6swd:F (3.2) BS02 ZN ? GO:0003723 ... Q9V1V5 32029867
    138292 6swd:R (3.2) BS02 ZN ? GO:0003735 ... Q9V1U5 32029867
    138293 6swd:W (3.2) BS02 ZN ? GO:0000028 ... Q9UXZ3 32029867
    138294 6swe:P (3.1) BS02 ZN ? GO:0003723 ... P62012 32029867
    138295 6swl:A (2.17) BS01 MG ? GO:0000160 ... Q09LZ6 N/A
    138296 6swl:B (2.17) BS01 MG ? GO:0000160 ... Q09LZ6 N/A
    138297 6swm:A (2.77) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 30560259
    138298 6swm:B (2.77) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 30560259
    138299 6swv:AAA (1.432) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32381789
    138300 6sx8:A (1.8) BS01 ZN 3.1.13.- N/A Q5S581 N/A
    138301 6sx8:A (1.8) BS02 MN 3.1.13.- N/A Q5S581 N/A
    138302 6sx8:B (1.8) BS01 ZN 3.1.13.- N/A Q5S581 N/A
    138303 6sx8:B (1.8) BS02 MN 3.1.13.- N/A Q5S581 N/A
    138304 6sx9:A (1.43) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    138305 6sy1:A (1.87) BS02 MG 1.2.4.- GO:0002244 ... Q96HY7 32695416
    138306 6sy1:B (1.87) BS03 MG 1.2.4.- GO:0002244 ... Q96HY7 32695416
    138307 6sy3:A (0.95) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32011145
    138308 6sy8:A (2.08) BS01 ZN 3.1.13.- N/A Q5S581 N/A
    138309 6sy8:B (2.08) BS01 ZN 3.1.13.- N/A Q5S581 N/A
    138310 6syb:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    138311 6sym:A (1.6302) BS01 ZN 1.8.4.12 GO:0005506 ... P0A746 N/A
    138312 6sym:B (1.6302) BS01 ZN 1.8.4.12 GO:0005506 ... P0A746 N/A
    138313 6syo:LLL (1.25) BS03 MG 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    138314 6syo:MMM (1.25) BS03 MG 1.12.99.6 GO:0005515 ... P0ACE0 N/A
    138315 6syq:A (3.0) BS05 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138316 6syq:B (3.0) BS03 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138317 6syr:A (1.49) BS02 MG ? N/A B1ZMF4 31740581
    138318 6sys:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    138319 6syt:C (3.45) BS02 MG ? GO:0000184 ... Q9H0W8 31792449
    138320 6syu:A (1.33) BS04 MG ? GO:0046872 ... B1ZMF4 31740581
    138321 6syv:A (1.12) BS01 MG ? GO:0046872 ... B1ZMF4 31740581
    138322 6syx:LLL (1.3) BS03 MG N/A GO:0008901 ... N/A N/A
    138323 6syx:MMM (1.3) BS03 MG N/A GO:0008901 ... N/A N/A
    138324 6syy:A (1.794) BS01 CU ? GO:0005507 ... O67206 N/A
    138325 6syy:A (1.794) BS02 CU ? GO:0005507 ... O67206 N/A
    138326 6syy:A (1.794) BS03 CU ? GO:0005507 ... O67206 N/A
    138327 6syy:A (1.794) BS04 CU ? GO:0005507 ... O67206 N/A
    138328 6sz0:A (1.74) BS01 MG ? GO:0046872 ... B1ZMF4 31740581
    138329 6sz0:A (1.74) BS02 MG ? GO:0046872 ... B1ZMF4 31740581
    138330 6sz5:A (2.23) BS03 CA ? GO:0000086 ... P0DP24 31785178
    138331 6sz5:A (2.23) BS04 CA ? GO:0000086 ... P0DP24 31785178
    138332 6sz5:A (2.23) BS05 CA ? GO:0000086 ... P0DP24 31785178
    138333 6sz5:A (2.23) BS06 CA ? GO:0000086 ... P0DP24 31785178
    138334 6sz9:C (3.7) BS01 ZN ? GO:0005737 ... Q5ZYB7 32513920
    138335 6szd:LLL (1.5) BS04 MG N/A GO:0008901 ... N/A N/A
    138336 6szd:MMM (1.5) BS04 MG N/A GO:0008901 ... N/A N/A
    138337 6szg:B (1.84) BS01 CA 2.5.1.31 GO:0000287 ... V5VCK8 31929185
    138338 6szh:B (1.65) BS01 CA 2.5.1.31 GO:0000287 ... V5VCK8 31929185
    138339 6szi:A (3.0) BS05 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138340 6szi:B (3.0) BS03 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138341 6szk:LLL (1.2) BS03 MG N/A GO:0008901 ... N/A N/A
    138342 6szk:MMM (1.2) BS03 MG N/A GO:0008901 ... N/A N/A
    138343 6szo:A (2.2) BS02 MG ? GO:0046872 ... B1ZMF4 31740581
    138344 6szu:A (2.41) BS03 MG ? GO:0003723 ... H6QM92 32304664
    138345 6szu:A (2.41) BS04 MG ? GO:0003723 ... H6QM92 32304664
    138346 6szu:B (2.41) BS03 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    138347 6szu:B (2.41) BS04 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    138348 6szv:A (2.5) BS03 MG ? GO:0003723 ... H6QM92 32304664
    138349 6szv:A (2.5) BS04 MG ? GO:0003723 ... H6QM92 32304664
    138350 6szv:B (2.5) BS05 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    138351 6szv:B (2.5) BS06 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    138352 6szw:A (3.14) BS01 ZN ? GO:0005759 ... Q07021 32559765
    138353 6szw:B (3.14) BS01 ZN ? GO:0005759 ... Q07021 32559765
    138354 6szw:C (3.14) BS01 ZN ? GO:0005759 ... Q07021 32559765
    138355 6t0b:a (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00401 32291341
    138356 6t0b:a (2.8) BS04 CA 7.1.1.9 GO:0004129 ... P00401 32291341
    138357 6t0b:a (2.8) BS05 MG 7.1.1.9 GO:0004129 ... P00401 32291341
    138358 6t0b:d (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P04037 32291341
    138359 6t0b:n (2.8) BS01 CU 7.1.1.9 GO:0004129 ... P00401 32291341
    138360 6t0b:n (2.8) BS04 CA 7.1.1.9 GO:0004129 ... P00401 32291341
    138361 6t0b:n (2.8) BS05 MG 7.1.1.9 GO:0004129 ... P00401 32291341
    138362 6t0b:q (2.8) BS01 ZN 1.9.3.1 GO:0005740 ... P04037 32291341
    138363 6t0e:A (1.89) BS03 MG ? GO:0046872 ... B1ZMF4 31740581
    138364 6t0i:A (1.53) BS03 MG 3.1.1.- GO:0046872 ... B1ZMF4 31740581
    138365 6t0m:A (1.51) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32011145
    138366 6t0n:B (2.54) BS03 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    138367 6t0p:A (1.19) BS01 CA 3.4.21.4 GO:0004252 ... P00760 32011145
    138368 6t0q:A (2.05) BS01 CA ? GO:0046872 ... E7E2M2 31985778
    138369 6t0q:A (2.05) BS02 CA ? GO:0046872 ... E7E2M2 31985778
    138370 6t0v:A (3.02) BS03 MG ? GO:0003723 ... H6QM92 32304664
    138371 6t0v:A (3.02) BS04 MG ? GO:0003723 ... H6QM92 32304664
    138372 6t0v:B (3.02) BS05 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    138373 6t0v:B (3.02) BS06 MG 2.7.7.48 GO:0000166 ... H6QM91 32304664
    138374 6t0y:A (1.2) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    138375 6t0y:A (1.2) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    138376 6t15:a (3.29) BS01 CU 7.1.1.9 GO:0004129 ... P00401 32291341
    138377 6t15:a (3.29) BS04 MG 7.1.1.9 GO:0004129 ... P00401 32291341
    138378 6t15:d (3.29) BS01 ZN 1.9.3.1 GO:0005740 ... P04037 32291341
    138379 6t16:A (3.1) BS01 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138380 6t16:B (3.1) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138381 6t18:A (3.15) BS03 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138382 6t18:B (3.15) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138383 6t1b:A (1.2) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    138384 6t1b:A (1.2) BS03 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... P84138 31978345
    138385 6t1d:A (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    138386 6t1d:A (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    138387 6t1d:B (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    138388 6t1d:B (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    138389 6t1d:C (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    138390 6t1d:C (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    138391 6t1d:D (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    138392 6t1d:D (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    138393 6t1d:E (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    138394 6t1d:E (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    138395 6t1d:F (2.2) BS03 CA ? GO:0046872 ... E7E2M2 31985778
    138396 6t1d:F (2.2) BS04 CA ? GO:0046872 ... E7E2M2 31985778
    138397 6t1p:A (3.5) BS04 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138398 6t1p:B (3.5) BS02 CA 2.4.1.5 GO:0009250 ... Q9RE05 32409580
    138399 6t26:A (2.265) BS01 ZN ? GO:0004035 ... Q93P54 33102813
    138400 6t26:A (2.265) BS02 ZN ? GO:0004035 ... Q93P54 33102813

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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