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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    137601 6sc3:E (1.82) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    137602 6sc4:A (2.6) BS01 ZN ? GO:0046872 ... A0A133ULQ3 32411108
    137603 6sc4:B (2.6) BS01 ZN ? GO:0046872 ... A0A133ULQ3 32411108
    137604 6sc4:B (2.6) BS02 ZN ? GO:0046872 ... A0A133ULQ3 32411108
    137605 6sc4:C (2.6) BS01 ZN ? GO:0046872 ... A0A133ULQ3 32411108
    137606 6sc4:D (2.6) BS01 ZN ? GO:0046872 ... A0A133ULQ3 32411108
    137607 6sc4:E (2.6) BS01 ZN ? GO:0046872 ... A0A133ULQ3 32411108
    137608 6sc5:A (2.1) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137609 6sc5:A (2.1) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137610 6sc5:A (2.1) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137611 6sc5:A (2.1) BS05 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137612 6sc5:A (2.1) BS06 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137613 6sc5:A (2.1) BS07 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137614 6sc5:A (2.1) BS08 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137615 6sc5:A (2.1) BS09 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137616 6sc6:A (2.25) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137617 6sc6:A (2.25) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137618 6sc6:A (2.25) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137619 6sc6:A (2.25) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137620 6sc6:A (2.25) BS05 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137621 6sc6:A (2.25) BS06 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137622 6sc6:A (2.25) BS07 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137623 6sc6:A (2.25) BS08 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137624 6sc7:A (2.56) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137625 6sc7:A (2.56) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137626 6sc7:A (2.56) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137627 6sc7:A (2.56) BS05 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137628 6sc7:A (2.56) BS06 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137629 6sc7:A (2.56) BS07 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137630 6sc7:A (2.56) BS08 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137631 6sc7:A (2.56) BS09 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137632 6sc8:A (2.106) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137633 6sc8:A (2.106) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137634 6sc8:A (2.106) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137635 6sc8:A (2.106) BS05 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137636 6sc8:A (2.106) BS06 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137637 6sc8:A (2.106) BS07 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137638 6sc8:A (2.106) BS08 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137639 6sc8:A (2.106) BS09 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137640 6sc9:A (2.47) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137641 6sc9:A (2.47) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137642 6sc9:A (2.47) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137643 6sc9:A (2.47) BS05 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137644 6sc9:A (2.47) BS06 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137645 6sc9:A (2.47) BS07 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137646 6sc9:A (2.47) BS08 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137647 6sc9:A (2.47) BS09 ZN 2.3.2.31 GO:0004842 ... Q96EP0 31813847
    137648 6scg:A (1.65) BS02 FE 1.1.1.1
    1.2.1.10    		 GO:0004022 ... P0A9Q7 32880589
    137649 6scg:B (1.65) BS02 FE 1.1.1.1
    1.2.1.10    		 GO:0004022 ... P0A9Q7 32880589
    137650 6sch:A (2.2) BS02 ZN 1.1.1.80 GO:0008270 ... P25984 34824282
    137651 6sch:B (2.2) BS02 ZN 1.1.1.80 GO:0008270 ... P25984 34824282
    137652 6sch:C (2.2) BS02 ZN 1.1.1.80 GO:0008270 ... P25984 34824282
    137653 6sch:D (2.2) BS02 ZN 1.1.1.80 GO:0008270 ... P25984 34824282
    137654 6sci:A (1.95) BS01 FE 1.1.1.1
    1.2.1.10    		 GO:0004022 ... P0A9Q7 32880589
    137655 6sci:B (1.95) BS01 FE 1.1.1.1
    1.2.1.10    		 GO:0004022 ... P0A9Q7 32880589
    137656 6sck:E (1.41) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137657 6sck:E (1.41) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137658 6sck:E (1.41) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137659 6sck:E (1.41) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137660 6sck:E (1.41) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    137661 6scp:A (1.8) BS01 ZN ? GO:0090529 ... Q8NNN6 32242019
    137662 6scp:B (1.8) BS01 ZN ? GO:0090529 ... Q8NNN6 32242019
    137663 6scu:E (1.42) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    137664 6scu:E (1.42) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137665 6scu:E (1.42) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137666 6scu:E (1.42) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137667 6scu:E (1.42) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137668 6scy:A (2.81) BS01 ZN ? GO:0000049 ... Q6LXJ4 37005440
    137669 6scy:B (2.81) BS01 ZN ? GO:0000049 ... Q6LXJ4 37005440
    137670 6sd0:A (3.7) BS01 MG 3.2.1.23 GO:0003824 ... Q56307 31874027
    137671 6sd0:B (3.7) BS01 MG 3.2.1.23 GO:0003824 ... Q56307 31874027
    137672 6sd0:C (3.7) BS01 MG 3.2.1.23 GO:0003824 ... Q56307 31874027
    137673 6sd0:D (3.7) BS01 MG 3.2.1.23 GO:0003824 ... Q56307 31874027
    137674 6sd7:A (1.05) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32230853
    137675 6sdh:A (1.04) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137676 6sdi:A (1.03) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137677 6sdj:A (1.02) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32235320
    137678 6sdk:A (1.81) BS02 CA ? GO:0003677 ... P26497 31649139
    137679 6sdk:A (1.81) BS03 CA ? GO:0003677 ... P26497 31649139
    137680 6sdk:B (1.81) BS03 CA ? GO:0003677 ... P26497 31649139
    137681 6sdk:B (1.81) BS04 CA ? GO:0003677 ... P26497 31649139
    137682 6sdk:C (1.81) BS02 CA ? GO:0003677 ... P26497 31649139
    137683 6sdk:C (1.81) BS03 CA ? GO:0003677 ... P26497 31649139
    137684 6sdk:D (1.81) BS03 CA ? GO:0003677 ... P26497 31649139
    137685 6sdk:D (1.81) BS04 CA ? GO:0003677 ... P26497 31649139
    137686 6sdl:A (1.08) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137687 6sdm:A (2.85) BS01 ZN 1.1.1.80 GO:0008270 ... P14941 34824282
    137688 6sdm:C (2.85) BS01 ZN 1.1.1.80 GO:0008270 ... P14941 34824282
    137689 6sdm:D (2.85) BS01 ZN 1.1.1.80 GO:0008270 ... P14941 34824282
    137690 6sdn:A (1.51) BS01 ZN ? GO:0004659 ... Q8WS26 N/A
    137691 6sdo:A (1.68) BS01 ZN ? GO:0004659 ... Q8WS26 N/A
    137692 6sdp:A (1.45) BS01 ZN ? GO:0004659 ... Q8WS26 N/A
    137693 6sdq:A (1.68) BS01 ZN ? GO:0004659 ... Q8WS26 N/A
    137694 6sds:A (1.26) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32364386
    137695 6sdt:A (1.94) BS01 ZN 4.2.1.1 GO:0004089 ... P43166 32364386
    137696 6sdx:A (2.645) BS02 MG 7.4.2.8 GO:0005524 ... P0A1B9 31393998
    137697 6sdx:A (2.645) BS03 MG 7.4.2.8 GO:0005524 ... P0A1B9 31393998
    137698 6se2:A (1.45) BS01 ZN ? GO:0004659 ... Q8WS26 N/A
    137699 6seh:A (3.15) BS01 ZN 3.1.-.- GO:0000724 ... G2QV68 31584081
    137700 6seh:A (3.15) BS02 ZN 3.1.-.- GO:0000724 ... G2QV68 31584081
    137701 6seh:C (3.15) BS01 ZN 3.1.-.- GO:0000724 ... G2QV68 31584081
    137702 6seh:C (3.15) BS02 ZN 3.1.-.- GO:0000724 ... G2QV68 31584081
    137703 6sei:A (2.69) BS02 ZN 3.1.-.- GO:0000724 ... G2QV68 31584081
    137704 6sei:A (2.69) BS03 ZN 3.1.-.- GO:0000724 ... G2QV68 31584081
    137705 6sei:B (2.69) BS01 CA ? GO:0005634 ... G2RCY5 31584081
    137706 6sei:C (2.69) BS02 ZN 3.1.-.- GO:0000724 ... G2QV68 31584081
    137707 6sei:C (2.69) BS03 ZN 3.1.-.- GO:0000724 ... G2QV68 31584081
    137708 6sei:C (2.69) BS04 CA 3.1.-.- GO:0000724 ... G2QV68 31584081
    137709 6sel:A (2.2) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    137710 6sel:A (2.2) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137711 6sel:A (2.2) BS05 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137712 6sel:A (2.2) BS06 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137713 6sel:A (2.2) BS07 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    137714 6ses:F (2.0) BS02 MG N/A GO:0036211 ... N/A 32591477
    137715 6seu:A (1.95) BS01 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    137716 6seu:A (1.95) BS02 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    137717 6sev:A (2.0) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    137718 6sev:B (2.0) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    137719 6sev:D (2.0) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    137720 6sev:E (2.0) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    137721 6sew:A (2.12) BS01 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    137722 6sex:A (1.78) BS01 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    137723 6sex:A (1.78) BS02 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    137724 6sey:A (1.23) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137725 6sez:A (2.22) BS01 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    137726 6sez:A (2.22) BS02 AU 3.2.1.17 GO:0003796 ... P00698 31490509
    137727 6sf5:A (1.9) BS01 MN 1.17.4.1 GO:0009263 ... A3XHF9 31414238
    137728 6sf5:A (1.9) BS02 MN 1.17.4.1 GO:0009263 ... A3XHF9 31414238
    137729 6sf5:B (1.9) BS01 MN 1.17.4.1 GO:0009263 ... A3XHF9 31414238
    137730 6sf5:B (1.9) BS02 MN 1.17.4.1 GO:0009263 ... A3XHF9 31414238
    137731 6sfa:A (1.9) BS01 MN ? GO:0004659 ... Q8WS26 N/A
    137732 6sfc:A (2.0) BS01 CA ? N/A O75530 31525019
    137733 6sfq:A (1.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137734 6sfu:A (1.04) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137735 6sg0:A (1.13) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137736 6sg6:A (0.98) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    137737 6sg8:A (2.5) BS01 CA ? GO:0004308 ... W5SB61 31591233
    137738 6sg8:B (2.5) BS01 CA ? GO:0004308 ... W5SB61 31591233
    137739 6sg9:FG (3.1) BS02 ZN N/A N/A N/A 31515389
    137740 6sg9:FL (3.1) BS02 ZN N/A N/A N/A 31515389
    137741 6sg9:FL (3.1) BS03 ZN N/A N/A N/A 31515389
    137742 6sg9:Fe (3.1) BS02 ZN ? GO:0005737 ... Q387L0 31515389
    137743 6sga:FP (3.1) BS02 MG N/A N/A N/A 31515389
    137744 6sga:FW (3.1) BS02 MG ? GO:0005739 ... Q38FI3 31515389
    137745 6sga:Fd (3.1) BS02 ZN ? GO:0005739 ... Q581T4 31515389
    137746 6sgb:FG (3.3) BS02 ZN N/A N/A N/A 31515389
    137747 6sgb:FL (3.3) BS02 ZN N/A N/A N/A 31515389
    137748 6sgb:FL (3.3) BS03 ZN N/A N/A N/A 31515389
    137749 6sgb:Fd (3.3) BS02 ZN ? GO:0005739 ... Q581T4 31515389
    137750 6sgb:Fe (3.3) BS01 ZN ? GO:0005737 ... Q387L0 31515389
    137751 6sgc:M1 (2.8) BS02 MG ? GO:0003735 ... G1TRM4 31768042
    137752 6sgc:b1 (2.8) BS02 ZN N/A GO:0003735 ... N/A 31768042
    137753 6sgc:e1 (2.8) BS02 ZN ? GO:0003735 ... G1U7M4 31768042
    137754 6sgc:j2 (2.8) BS03 ZN ? GO:0003723 ... U3KPD5 31768042
    137755 6sgc:m2 (2.8) BS02 ZN N/A GO:0003735 ... N/A 31768042
    137756 6sgc:o2 (2.8) BS03 ZN ? GO:0003735 ... G1T040 31768042
    137757 6sgc:p2 (2.8) BS02 ZN ? GO:0003735 ... G1SY53 31768042
    137758 6sge:A (1.5) BS02 MG ? GO:0000281 ... P62745 31522999
    137759 6sge:A (1.5) BS03 MG ? GO:0000281 ... P62745 31522999
    137760 6sge:C (1.5) BS02 MG ? GO:0000281 ... P62745 31522999
    137761 6sge:C (1.5) BS03 MG ? GO:0000281 ... P62745 31522999
    137762 6sgp:A (1.58) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 38224368
    137763 6sgp:A (1.58) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 38224368
    137764 6sgp:A (1.58) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 38224368
    137765 6sh1:AAA (2.1) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 31514225
    137766 6sh1:CCC (2.1) BS01 ZN 3.4.24.11 GO:0001786 ... P08473 31514225
    137767 6sh2:AAA (2.6) BS02 ZN 3.4.24.11 GO:0001786 ... P08473 31514225
    137768 6sh8:K (3.14) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    137769 6sh8:K (3.14) BS05 MN ? GO:0016020 ... F0NDX2 32730741
    137770 6sh8:K (3.14) BS06 MN ? GO:0016020 ... F0NDX2 32730741
    137771 6sh9:B (2.4) BS02 MN 3.2.1.97 GO:0030246 ... Q3T552 31645583
    137772 6sh9:B (2.4) BS03 MN 3.2.1.97 GO:0030246 ... Q3T552 31645583
    137773 6sh9:B (2.4) BS04 MN 3.2.1.97 GO:0030246 ... Q3T552 31645583
    137774 6sh9:B (2.4) BS05 MN 3.2.1.97 GO:0030246 ... Q3T552 31645583
    137775 6shb:K (3.07) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    137776 6shb:K (3.07) BS05 MN ? GO:0016020 ... F0NDX2 32730741
    137777 6shk:A (1.992) BS01 ZN 3.4.-.- GO:0005576 ... P81605 N/A
    137778 6shk:A (1.992) BS02 ZN 3.4.-.- GO:0005576 ... P81605 N/A
    137779 6sho:A (3.20008) BS01 ZN ? GO:0000228 ... O15392 31692460
    137780 6sho:B (3.20008) BS01 ZN ? GO:0000228 ... O15392 31692460
    137781 6sht:A (2.73) BS01 MG 1.16.3.1 GO:0004322 ... P09528 32374767
    137782 6shv:A (1.808) BS03 ZN ? GO:0004659 ... Q8WS26 N/A
    137783 6shx:B (2.4) BS01 ZN ? GO:0005524 ... Q12083 34088835
    137784 6shz:A (1.24) BS01 ZN ? GO:0000976 ... P04637 31990523
    137785 6shz:B (1.24) BS01 ZN ? GO:0000976 ... P04637 31990523
    137786 6si0:A (1.53) BS01 ZN ? GO:0000976 ... P04637 31990523
    137787 6si0:B (1.53) BS01 ZN ? GO:0000976 ... P04637 31990523
    137788 6si1:A (1.44) BS01 ZN ? GO:0000976 ... P04637 31990523
    137789 6si1:B (1.44) BS01 ZN ? GO:0000976 ... P04637 31990523
    137790 6si2:A (1.5) BS01 ZN ? GO:0000976 ... P04637 31990523
    137791 6si2:B (1.5) BS01 ZN ? GO:0000976 ... P04637 31990523
    137792 6si3:A (1.4) BS01 ZN ? GO:0000976 ... P04637 31990523
    137793 6si3:B (1.4) BS01 ZN ? GO:0000976 ... P04637 31990523
    137794 6si4:A (1.8) BS01 ZN ? GO:0000976 ... P04637 31990523
    137795 6si4:B (1.8) BS01 ZN ? GO:0000976 ... P04637 31990523
    137796 6si9:A (1.9) BS03 CA ? GO:0003924 ... P0A031 31997533
    137797 6sic:K (3.52) BS02 ZN ? GO:0016020 ... F0NDX2 32730741
    137798 6sio:A (1.60418) BS02 MG ? GO:0000122 ... P31947 32501690
    137799 6sir:A (1.7) BS01 CA ? GO:0009190 ... A0A1Y2HEJ3 31808997
    137800 6sir:B (1.7) BS02 CA ? GO:0009190 ... A0A1Y2HEJ3 31808997
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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