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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13001 1r2f:A (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    13002 1r2f:B (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    13003 1r2f:B (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    13004 1r2m:A (1.0) BS01 MN ? GO:0005576 ... P79073 14555650
    13005 1r2q:A (1.05) BS01 MG 3.6.5.2 GO:0003924 ... P20339 14684892
    13006 1r2r:B (1.5) BS01 MG 4.2.3.3
    5.3.1.1
    GO:0004807 ... P00939 14643664
    13007 1r2u:A (-1.00) BS01 CA ? GO:0005509 ... Q7ZZB9 15109253
    13008 1r2y:A (2.34) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    13009 1r2z:A (1.63) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    13010 1r33:A (1.8) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    13011 1r34:A (1.95) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    13012 1r37:A (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    13013 1r37:A (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    13014 1r37:B (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    13015 1r37:B (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    13016 1r3c:A (2.0) BS01 MG 2.7.11.24 GO:0000077 ... Q16539 14726206
    13017 1r3n:A (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13018 1r3n:A (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13019 1r3n:B (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13020 1r3n:B (2.7) BS03 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13021 1r3n:C (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13022 1r3n:C (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13023 1r3n:D (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13024 1r3n:D (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13025 1r3n:E (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13026 1r3n:E (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13027 1r3n:F (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13028 1r3n:F (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13029 1r3n:G (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13030 1r3n:G (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13031 1r3n:H (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13032 1r3n:H (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13033 1r3u:A (2.5) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 N/A
    13034 1r3u:B (2.5) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 N/A
    13035 1r42:A (2.2) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 14754895
    13036 1r43:A (2.8) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13037 1r43:A (2.8) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13038 1r43:B (2.8) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13039 1r43:B (2.8) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    13040 1r44:A (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    13041 1r44:B (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    13042 1r44:C (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    13043 1r44:D (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    13044 1r44:E (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    13045 1r44:F (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    13046 1r4a:A (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    13047 1r4a:B (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    13048 1r4a:C (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    13049 1r4a:D (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    13050 1r4f:A (2.3) BS01 CA 3.2.2.1 GO:0006139 ... Q9GPQ4 15050818
    13051 1r4f:B (2.3) BS01 CA 3.2.2.1 GO:0006139 ... Q9GPQ4 15050818
    13052 1r4i:A (3.1) BS03 ZN ? GO:0003700 ... P15207 15037741
    13053 1r4i:A (3.1) BS04 ZN ? GO:0003700 ... P15207 15037741
    13054 1r4i:B (3.1) BS03 ZN ? GO:0003700 ... P15207 15037741
    13055 1r4i:B (3.1) BS04 ZN ? GO:0003700 ... P15207 15037741
    13056 1r4l:A (3.0) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 14754895
    13057 1r4m:F (3.0) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    13058 1r4m:H (3.0) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    13059 1r4n:F (3.6) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    13060 1r4n:H (3.6) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    13061 1r4o:A (2.5) BS03 ZN ? GO:0003700 ... P06536 1865905
    13062 1r4o:A (2.5) BS04 ZN ? GO:0003700 ... P06536 1865905
    13063 1r4o:B (2.5) BS02 ZN ? GO:0003700 ... P06536 1865905
    13064 1r4o:B (2.5) BS03 ZN ? GO:0003700 ... P06536 1865905
    13065 1r4r:A (3.0) BS03 ZN ? GO:0003700 ... P06536 1865905
    13066 1r4r:A (3.0) BS04 ZN ? GO:0003700 ... P06536 1865905
    13067 1r4r:B (3.0) BS03 ZN ? GO:0003700 ... P06536 1865905
    13068 1r4r:B (3.0) BS04 ZN ? GO:0003700 ... P06536 1865905
    13069 1r4v:A (1.9) BS01 ZN ? GO:0046982 ... O66665 16287087
    13070 1r4v:A (1.9) BS02 ZN ? GO:0046982 ... O66665 16287087
    13071 1r54:A (1.85) BS01 ZN 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    13072 1r54:A (1.85) BS02 CA 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    13073 1r55:A (1.58) BS01 ZN 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    13074 1r55:A (1.58) BS02 CA 3.4.24.- GO:0004222 ... Q9BZ11 14659745
    13075 1r58:A (1.9) BS01 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    13076 1r58:A (1.9) BS02 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    13077 1r5a:A (2.5) BS01 CU 2.5.1.18 GO:0004364 ... Q9GQG7 15717864
    13078 1r5g:A (2.0) BS01 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    13079 1r5g:A (2.0) BS02 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    13080 1r5h:A (2.4) BS01 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    13081 1r5h:A (2.4) BS02 MN 3.4.11.18 GO:0006508 ... P50579 15012983
    13082 1r5t:A (2.0) BS01 ZN 3.5.4.5 GO:0003824 ... Q06549 15148397
    13083 1r5t:B (2.0) BS01 ZN 3.5.4.5 GO:0003824 ... Q06549 15148397
    13084 1r5t:C (2.0) BS01 ZN 3.5.4.5 GO:0003824 ... Q06549 15148397
    13085 1r5t:D (2.0) BS01 ZN 3.5.4.5 GO:0003824 ... Q06549 15148397
    13086 1r5u:A (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 14963322
    13087 1r5u:A (4.5) BS02 MG 2.7.7.6 GO:0000428 ... P04050 14963322
    13088 1r5u:B (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 14963322
    13089 1r5u:C (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 14963322
    13090 1r5u:I (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 14963322
    13091 1r5u:I (4.5) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 14963322
    13092 1r5u:J (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 14963322
    13093 1r5u:L (4.5) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 14963322
    13094 1r5x:A (2.3) BS01 ZN ? GO:0006508 ... O28085 14737182
    13095 1r5x:B (2.3) BS01 ZN ? GO:0006508 ... O28085 14737182
    13096 1r5y:A (1.2) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    13097 1r61:A (2.5) BS01 ZN ? GO:0004061 ... P84132 N/A
    13098 1r61:B (2.5) BS01 ZN ? GO:0004061 ... P84132 N/A
    13099 1r64:A (2.2) BS02 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    13100 1r64:A (2.2) BS03 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    13101 1r64:A (2.2) BS04 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    13102 1r64:A (2.2) BS05 K 3.4.21.61 GO:0004252 ... P13134 14992578
    13103 1r64:A (2.2) BS06 K 3.4.21.61 GO:0004252 ... P13134 14992578
    13104 1r64:B (2.2) BS02 K 3.4.21.61 GO:0004252 ... P13134 14992578
    13105 1r64:B (2.2) BS03 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    13106 1r64:B (2.2) BS04 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    13107 1r64:B (2.2) BS05 CA 3.4.21.61 GO:0004252 ... P13134 14992578
    13108 1r64:B (2.2) BS06 K 3.4.21.61 GO:0004252 ... P13134 14992578
    13109 1r64:B (2.2) BS07 K 3.4.21.61 GO:0004252 ... P13134 14992578
    13110 1r65:A (1.95) BS01 FE2 1.17.4.1 GO:0004748 ... P69924 14677973
    13111 1r65:A (1.95) BS02 FE2 1.17.4.1 GO:0004748 ... P69924 14677973
    13112 1r65:B (1.95) BS01 FE2 1.17.4.1 GO:0004748 ... P69924 14677973
    13113 1r65:B (1.95) BS02 FE2 1.17.4.1 GO:0004748 ... P69924 14677973
    13114 1r67:A (1.77) BS01 MG 5.3.3.2 GO:0000287 ... Q46822 16617181
    13115 1r6b:X (2.25) BS01 MG ? GO:0004176 ... P0ABH9 15037248
    13116 1r6o:A (2.25) BS01 ZN ? N/A P0ABH9 15037248
    13117 1r6o:B (2.25) BS01 ZN ? N/A P0ABH9 15037248
    13118 1r6p:A (-1.00) BS01 CA ? GO:0005509 ... Q7ZZB9 15109253
    13119 1r6v:A (1.7) BS01 CA 3.4.21.- GO:0004252 ... Q93LQ6 14687574
    13120 1r6w:A (1.62) BS01 MG 4.2.1.113 GO:0000287 ... P29208 14661953
    13121 1r6x:A (1.4) BS03 CO 2.7.7.4 GO:0000103 ... P08536 14983089
    13122 1r79:A (-1.00) BS01 ZN 2.7.1.107 GO:0004143 ... Q16760 N/A
    13123 1r79:A (-1.00) BS02 ZN 2.7.1.107 GO:0004143 ... Q16760 N/A
    13124 1r7m:A (2.25) BS03 CA 3.1.-.- GO:0004519 ... P03882 14636596
    13125 1r7m:A (2.25) BS04 CA 3.1.-.- GO:0004519 ... P03882 14636596
    13126 1r7m:B (2.25) BS03 CA 3.1.-.- GO:0004519 ... P03882 14636596
    13127 1r7m:B (2.25) BS04 CA 3.1.-.- GO:0004519 ... P03882 14636596
    13128 1r7o:A (1.85) BS01 ZN 3.2.1.78 GO:0000272 ... P49424 N/A
    13129 1r7o:A (1.85) BS02 ZN 3.2.1.78 GO:0000272 ... P49424 N/A
    13130 1r7o:A (1.85) BS03 ZN 3.2.1.78 GO:0000272 ... P49424 N/A
    13131 1r7y:A (1.75) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12972418
    13132 1r80:A (1.65) BS02 MN 2.4.1.37
    2.4.1.40
    GO:0005975 ... P16442 12972418
    13133 1r85:A (1.45) BS01 ZN 3.2.1.8 GO:0004553 ... P40943 15277671
    13134 1r85:A (1.45) BS02 ZN 3.2.1.8 GO:0004553 ... P40943 15277671
    13135 1r85:A (1.45) BS03 ZN 3.2.1.8 GO:0004553 ... P40943 15277671
    13136 1r85:A (1.45) BS04 ZN 3.2.1.8 GO:0004553 ... P40943 15277671
    13137 1r86:A (1.8) BS01 ZN 3.2.1.8 GO:0004553 ... P40943 N/A
    13138 1r86:A (1.8) BS02 ZN 3.2.1.8 GO:0004553 ... P40943 N/A
    13139 1r86:A (1.8) BS03 ZN 3.2.1.8 GO:0004553 ... P40943 N/A
    13140 1r86:A (1.8) BS04 ZN 3.2.1.8 GO:0004553 ... P40943 N/A
    13141 1r87:A (1.67) BS04 ZN 3.2.1.8 GO:0004553 ... P40943 15277671
    13142 1r87:A (1.67) BS05 ZN 3.2.1.8 GO:0004553 ... P40943 15277671
    13143 1r87:A (1.67) BS06 ZN 3.2.1.8 GO:0004553 ... P40943 15277671
    13144 1r87:A (1.67) BS07 ZN 3.2.1.8 GO:0004553 ... P40943 15277671
    13145 1r89:A (1.8) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13146 1r89:A (1.8) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13147 1r89:A (1.8) BS03 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    13148 1r8a:A (2.1) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13149 1r8a:A (2.1) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13150 1r8b:A (2.0) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13151 1r8b:A (2.0) BS02 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    13152 1r8b:A (2.0) BS03 MG 2.7.7.72 GO:0000049 ... O28126 14636575
    13153 1r8c:A (1.9) BS01 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13154 1r8c:A (1.9) BS02 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13155 1r8c:A (1.9) BS03 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13156 1r8c:A (1.9) BS04 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13157 1r8c:A (1.9) BS05 MN 2.7.7.72 GO:0000049 ... O28126 14636575
    13158 1r8k:A (2.1) BS01 CO 1.1.1.262 GO:0000287 ... P58717 N/A
    13159 1r8k:B (2.1) BS01 CO 1.1.1.262 GO:0000287 ... P58717 N/A
    13160 1r8l:A (2.6) BS01 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 15312766
    13161 1r8l:B (2.6) BS01 CA 3.2.1.-
    3.2.1.89
    GO:0015926 ... Q65CX5 15312766
    13162 1r8q:E (1.86) BS02 ZN ? GO:0005085 ... Q99418 14654833
    13163 1r8u:B (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 14594809
    13164 1r8u:B (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 14594809
    13165 1r8u:B (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 14594809
    13166 1r9c:A (1.83) BS01 MN 2.5.1.1 GO:0005737 ... Q98GG1 14677948
    13167 1r9c:B (1.83) BS01 MN 2.5.1.1 GO:0005737 ... Q98GG1 14677948
    13168 1r9j:A (2.22) BS01 CA 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    13169 1r9j:B (2.22) BS02 CA 2.2.1.1 GO:0003824 ... Q8MPM3 15149284
    13170 1r9p:A (-1.00) BS01 ZN ? GO:0005506 ... Q57074 15522305
    13171 1r9s:A (4.25) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    13172 1r9s:A (4.25) BS04 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    13173 1r9s:B (4.25) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    13174 1r9s:C (4.25) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    13175 1r9s:I (4.25) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    13176 1r9s:I (4.25) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    13177 1r9s:J (4.25) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 15537538
    13178 1r9s:L (4.25) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 15537538
    13179 1r9t:A (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 15537538
    13180 1r9t:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    13181 1r9t:A (3.5) BS05 MG 2.7.7.6 GO:0000428 ... P04050 15537538
    13182 1r9t:B (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 15537538
    13183 1r9t:C (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 15537538
    13184 1r9t:I (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    13185 1r9t:I (3.5) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 15537538
    13186 1r9t:J (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 15537538
    13187 1r9t:L (3.5) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 15537538
    13188 1r9x:A (1.58) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    13189 1r9y:A (1.57) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    13190 1r9z:A (1.32) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    13191 1ra0:A (1.12) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    13192 1ra1:A (1.9) BS01 CA 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    13193 1ra5:A (1.4) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 15381761
    13194 1raa:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    13195 1raa:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    13196 1rab:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    13197 1rab:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    13198 1rac:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    13199 1rac:D (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751
    13200 1rad:B (2.5) BS01 ZN ? GO:0005515 ... P0A7F3 8441751

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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