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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    131001 6msl:A (3.104) BS05 MN ? GO:0001525 ... P06756 31353240
    131002 6msl:B (3.104) BS01 MN ? GO:0001618 ... P05106 31353240
    131003 6msl:B (3.104) BS02 MN ? GO:0001618 ... P05106 31353240
    131004 6msl:B (3.104) BS03 MN ? GO:0001618 ... P05106 31353240
    131005 6msm:A (3.2) BS02 MG 5.6.1.6 GO:0005254 ... P13569 30459277
    131006 6msm:A (3.2) BS03 MG 5.6.1.6 GO:0005254 ... P13569 30459277
    131007 6msu:A (3.11) BS03 MN ? GO:0001525 ... P06756 31353240
    131008 6msu:A (3.11) BS04 MN ? GO:0001525 ... P06756 31353240
    131009 6msu:A (3.11) BS05 MN ? GO:0001525 ... P06756 31353240
    131010 6msu:A (3.11) BS06 MN ? GO:0001525 ... P06756 31353240
    131011 6msu:A (3.11) BS07 MN ? GO:0001525 ... P06756 31353240
    131012 6msu:B (3.11) BS01 MN ? GO:0001618 ... P05106 31353240
    131013 6msu:B (3.11) BS02 MN ? GO:0001618 ... P05106 31353240
    131014 6msu:B (3.11) BS03 MN ? GO:0001618 ... P05106 31353240
    131015 6mta:A (2.15) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32187889
    131016 6mta:B (2.15) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32187889
    131017 6mta:C (2.15) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32187889
    131018 6mtb:A (3.6) BS03 MG ? GO:0002181 ... G1TT27 30355441
    131019 6mtb:aa (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    131020 6mtb:dd (3.6) BS02 ZN ? GO:0003735 ... G1U7M4 30355441
    131021 6mtb:ff (3.6) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    131022 6mtb:g (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    131023 6mtb:j (3.6) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    131024 6mtb:m (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    131025 6mtb:o (3.6) BS03 ZN ? GO:0003735 ... G1T040 30355441
    131026 6mtb:p (3.6) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    131027 6mtc:LL (3.4) BS02 MG ? GO:0003735 ... G1TRM4 30355441
    131028 6mtc:TT (3.4) BS02 MG N/A GO:0003735 ... N/A 30355441
    131029 6mtc:aa (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    131030 6mtc:dd (3.4) BS02 ZN ? GO:0003735 ... G1U7M4 30355441
    131031 6mtc:ff (3.4) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    131032 6mtc:g (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    131033 6mtc:j (3.4) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    131034 6mtc:m (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    131035 6mtc:o (3.4) BS03 ZN ? GO:0003735 ... G1T040 30355441
    131036 6mtc:p (3.4) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    131037 6mtd:DD (3.3) BS02 MG 4.2.99.18 GO:0003677 ... E2RH47 30355441
    131038 6mtd:DD (3.3) BS03 MG 4.2.99.18 GO:0003677 ... E2RH47 30355441
    131039 6mtd:aa (3.3) BS02 ZN ? GO:0003735 ... Q56JV1 30355441
    131040 6mtd:dd (3.3) BS02 MG ? GO:0003735 ... G1U7M4 30355441
    131041 6mtd:dd (3.3) BS03 ZN ? GO:0003735 ... G1U7M4 30355441
    131042 6mtd:g (3.3) BS02 MG ? GO:0002181 ... P49207 30355441
    131043 6mtd:j (3.3) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    131044 6mtd:m (3.3) BS02 ZN N/A GO:0003735 ... N/A 30355441
    131045 6mtd:o (3.3) BS02 ZN ? GO:0003735 ... G1T040 30355441
    131046 6mtd:p (3.3) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    131047 6mte:A (3.4) BS03 MG ? GO:0002181 ... G1TT27 30355441
    131048 6mte:TT (3.4) BS02 MG N/A GO:0003735 ... N/A 30355441
    131049 6mte:aa (3.4) BS02 ZN ? GO:0003735 ... Q56JV1 30355441
    131050 6mte:ff (3.4) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    131051 6mte:g (3.4) BS02 ZN ? GO:0002181 ... P49207 30355441
    131052 6mte:j (3.4) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    131053 6mte:m (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    131054 6mte:o (3.4) BS02 ZN ? GO:0003735 ... G1T040 30355441
    131055 6mte:p (3.4) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    131056 6mti:1 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    131057 6mti:2 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    131058 6mti:2 (10.4) BS02 MG ? GO:0016020 ... P21707 31160571
    131059 6mti:3 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    131060 6mti:3 (10.4) BS02 MG ? GO:0016020 ... P21707 31160571
    131061 6mti:4 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    131062 6mti:4 (10.4) BS02 MG ? GO:0016020 ... P21707 31160571
    131063 6mti:5 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    131064 6mti:5 (10.4) BS02 MG ? GO:0016020 ... P21707 31160571
    131065 6mti:6 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    131066 6mtw:A (1.999) BS01 ZN 2.3.1.-
    3.1.1.32
    3.1.1.4
    3.1.1.5    		 GO:0004622 ... Q8NCC3 30830753
    131067 6mtw:A (1.999) BS02 ZN 2.3.1.-
    3.1.1.32
    3.1.1.4
    3.1.1.5    		 GO:0004622 ... Q8NCC3 30830753
    131068 6mtw:B (1.999) BS01 ZN 2.3.1.-
    3.1.1.32
    3.1.1.4
    3.1.1.5    		 GO:0004622 ... Q8NCC3 30830753
    131069 6mtw:B (1.999) BS02 ZN 2.3.1.-
    3.1.1.32
    3.1.1.4
    3.1.1.5    		 GO:0004622 ... Q8NCC3 30830753
    131070 6mud:A (2.69) BS01 CA ? GO:0000086 ... P0DP24 31072926
    131071 6mud:A (2.69) BS02 CA ? GO:0000086 ... P0DP24 31072926
    131072 6mud:A (2.69) BS03 CA ? GO:0000086 ... P0DP24 31072926
    131073 6mud:A (2.69) BS04 CA ? GO:0000086 ... P0DP24 31072926
    131074 6mue:A (1.9) BS02 CA ? GO:0000086 ... P0DP23 31072926
    131075 6mue:A (1.9) BS03 CA ? GO:0000086 ... P0DP23 31072926
    131076 6mue:A (1.9) BS04 CA ? GO:0000086 ... P0DP23 31072926
    131077 6mue:A (1.9) BS05 CA ? GO:0000086 ... P0DP23 31072926
    131078 6muj:A (2.249) BS01 CA 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131079 6muj:A (2.249) BS02 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131080 6muj:A (2.249) BS03 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131081 6muj:B (2.249) BS01 CA 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131082 6muj:B (2.249) BS02 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131083 6muj:B (2.249) BS03 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131084 6muj:C (2.249) BS01 CA 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131085 6muj:C (2.249) BS02 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131086 6muj:D (2.249) BS01 CA 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131087 6muj:D (2.249) BS02 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131088 6muj:D (2.249) BS03 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131089 6muj:D (2.249) BS04 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131090 6muj:E (2.249) BS01 CA 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131091 6muj:E (2.249) BS02 CU 1.8.3.7 GO:0005509 ... Q9F3C7 30824597
    131092 6muk:A (1.93) BS01 ZN ? GO:0000920 ... Q5F676 N/A
    131093 6mur:C (3.1) BS03 ZN ? GO:0003723 ... B6YWC0 30503773
    131094 6mur:D (3.1) BS03 ZN ? GO:0003723 ... B6YWC0 30503773
    131095 6mus:A (3.6) BS02 ZN 2.7.7.-
    3.1.-.-    		 GO:0004519 ... B6YWB8 30503773
    131096 6mus:C (3.6) BS03 ZN ? GO:0003723 ... B6YWC0 30503773
    131097 6mus:D (3.6) BS03 ZN ? GO:0003723 ... B6YWC0 30503773
    131098 6mus:K (3.6) BS03 ZN ? GO:0003723 ... B6YWC0 30503773
    131099 6mut:C (3.1) BS03 ZN ? GO:0003723 ... B6YWC0 30503773
    131100 6mut:D (3.1) BS03 ZN ? GO:0003723 ... B6YWC0 30503773
    131101 6muu:A (3.0) BS01 ZN 2.7.7.-
    3.1.-.-    		 GO:0004519 ... B6YWB8 30503773
    131102 6muu:C (3.0) BS02 ZN ? GO:0003723 ... B6YWC0 30503773
    131103 6muu:D (3.0) BS02 ZN ? GO:0003723 ... B6YWC0 30503773
    131104 6mv3:A (-1.00) BS01 CA ? GO:0005509 ... P19429
    P63316    		 30376637
    131105 6mv4:H (1.37) BS05 CA 3.4.21.22 GO:0004252 ... P00740 30725510
    131106 6mv4:H (1.37) BS06 NA 3.4.21.22 GO:0004252 ... P00740 30725510
    131107 6mv5:L (2.1) BS02 ZN ? N/A A0A097PUG4 30653992
    131108 6mv5:L (2.1) BS03 ZN ? N/A A0A097PUG4 30653992
    131109 6mv5:L (2.1) BS04 ZN ? N/A A0A097PUG4 30653992
    131110 6mvg:A (2.8) BS02 CA N/A GO:0004553 ... N/A 30658055
    131111 6mvg:B (2.8) BS02 CA N/A GO:0004553 ... N/A 30658055
    131112 6mvg:C (2.8) BS02 CA N/A GO:0004553 ... N/A 30658055
    131113 6mvh:A (2.4) BS01 CA N/A GO:0004553 ... N/A 30658055
    131114 6mvh:B (2.4) BS01 CA N/A GO:0004553 ... N/A 30658055
    131115 6mvh:C (2.4) BS01 CA N/A GO:0004553 ... N/A 30658055
    131116 6mvh:D (2.4) BS01 CA N/A GO:0004553 ... N/A 30658055
    131117 6mw8:A (1.756) BS01 MN 2.4.1.87 GO:0000166 ... K3WC47 32414843
    131118 6mwf:A (1.75) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131119 6mwf:B (1.75) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131120 6mwf:C (1.75) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131121 6mwi:A (1.75) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131122 6mwi:B (1.75) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131123 6mwi:C (1.75) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131124 6mwj:A (2.05) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131125 6mwj:B (2.05) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131126 6mwj:C (2.05) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131127 6mwk:A (1.8) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131128 6mwk:B (1.8) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131129 6mwk:C (1.8) BS01 ZN 4.6.1.12 GO:0008299 ... Q3JRA0 N/A
    131130 6mx0:B (1.73) BS01 CA ? GO:0002218 ... Q86WV6 30655953
    131131 6mx3:B (1.362) BS03 CA ? GO:0002218 ... Q86WV6 30655953
    131132 6mxb:A (2.192) BS02 MG ? GO:0000166 ... Q38CA1 31287615
    131133 6mxb:A (2.192) BS03 MG ? GO:0000166 ... Q38CA1 31287615
    131134 6mxb:D (2.192) BS02 MG ? GO:0000166 ... Q38CA1 31287615
    131135 6mxc:A (1.993) BS02 MG ? GO:0000166 ... Q38CA1 31287615
    131136 6mxc:A (1.993) BS03 MG ? GO:0000166 ... Q38CA1 31287615
    131137 6mxc:B (1.993) BS02 MG ? GO:0000166 ... Q38CA1 31287615
    131138 6mxc:C (1.993) BS02 MG ? GO:0000166 ... Q38CA1 31287615
    131139 6mxc:D (1.993) BS02 MG ? GO:0000166 ... Q38CA1 31287615
    131140 6mxc:E (1.993) BS02 MG ? GO:0000166 ... Q38CA1 31287615
    131141 6mxc:F (1.993) BS02 MG ? GO:0000166 ... Q38CA1 31287615
    131142 6mxc:F (1.993) BS03 MG ? GO:0000166 ... Q38CA1 31287615
    131143 6mxe:B (2.47) BS03 CA ? GO:0002218 ... Q86WV6 30655953
    131144 6mxg:B (2.392) BS02 MG 2.4.2.8 GO:0000166 ... Q07010 31287615
    131145 6mxo:A (2.04) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 30709915
    131146 6mxo:A (2.04) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 30709915
    131147 6mxt:A (2.95934) BS02 MG 3.2.1.17 GO:0003796 ... P00720
    P07550    		 30327561
    131148 6mxv:B (1.78) BS01 MG ? GO:0046872 ... Q5NFU2 N/A
    131149 6mzb:A (3.4) BS01 ZN 3.1.4.35 GO:0001750 ... P11541 30820458
    131150 6mzb:B (3.4) BS01 ZN 3.1.4.35 GO:0001750 ... P23439 30820458
    131151 6mze:I (3.6) BS02 MG ? GO:0000226 ... P02554 30422110
    131152 6mze:K (3.6) BS02 MG ? GO:0000226 ... P02554 30422110
    131153 6mzf:I (4.4) BS02 MG ? GO:0000226 ... P02554 30422110
    131154 6mzf:R (4.4) BS02 MG ? GO:0000226 ... P02554 30422110
    131155 6mzf:W (4.4) BS02 MG ? GO:0000226 ... P02554 30422110
    131156 6mzg:H (3.208) BS02 MG ? GO:0000226 ... P02554 30422110
    131157 6n0a:A (1.75) BS01 CA ? GO:0046872 ... A0A096ZH83 30936156
    131158 6n0a:B (1.75) BS01 CA ? GO:0046872 ... A0A096ZH83 30936156
    131159 6n0j:A (1.79) BS01 FE 1.13.11.24 GO:0003712 ... O00625 N/A
    131160 6n0k:A (1.46) BS01 FE 1.13.11.24 GO:0003712 ... O00625 N/A
    131161 6n13:B (-1.00) BS01 ZN 2.3.2.31 GO:0004842 ... O60260 30446597
    131162 6n13:B (-1.00) BS02 ZN 2.3.2.31 GO:0004842 ... O60260 30446597
    131163 6n13:B (-1.00) BS03 ZN 2.3.2.31 GO:0004842 ... O60260 30446597
    131164 6n13:B (-1.00) BS04 ZN 2.3.2.31 GO:0004842 ... O60260 30446597
    131165 6n13:B (-1.00) BS05 ZN 2.3.2.31 GO:0004842 ... O60260 30446597
    131166 6n13:B (-1.00) BS06 ZN 2.3.2.31 GO:0004842 ... O60260 30446597
    131167 6n13:B (-1.00) BS07 ZN 2.3.2.31 GO:0004842 ... O60260 30446597
    131168 6n1a:A (1.6) BS01 MN ? N/A G9YSP4 31182795
    131169 6n1a:A (1.6) BS02 CA ? N/A G9YSP4 31182795
    131170 6n1a:A (1.6) BS03 CA ? N/A G9YSP4 31182795
    131171 6n1b:A (1.3) BS03 CA ? N/A G9YSP4 31182795
    131172 6n1b:A (1.3) BS04 CA ? N/A G9YSP4 31182795
    131173 6n1d:AL01 (3.2) BS03 MG ? GO:0000049 ... Q72GV9 30936299
    131174 6n1d:AL01 (3.2) BS04 MG ? GO:0000049 ... Q72GV9 30936299
    131175 6n1d:AL02 (3.2) BS03 MG ? GO:0002181 ... Q72I07 30936299
    131176 6n1d:AL02 (3.2) BS04 MG ? GO:0002181 ... Q72I07 30936299
    131177 6n1d:AL02 (3.2) BS05 MG ? GO:0002181 ... Q72I07 30936299
    131178 6n1d:AL04 (3.2) BS02 MG ? GO:0003735 ... Q72I05 30936299
    131179 6n1d:AL04 (3.2) BS03 MG ? GO:0003735 ... Q72I05 30936299
    131180 6n1d:AL15 (3.2) BS02 MG ? GO:0003735 ... Q72I23 30936299
    131181 6n1d:AL15 (3.2) BS03 MG ? GO:0003735 ... Q72I23 30936299
    131182 6n1d:AL15 (3.2) BS04 MG ? GO:0003735 ... Q72I23 30936299
    131183 6n1d:AL20 (3.2) BS02 MG ? GO:0000027 ... Q72L76 30936299
    131184 6n1d:AL21 (3.2) BS02 MG ? GO:0003723 ... Q72HR2 30936299
    131185 6n1d:AL21 (3.2) BS03 MG ? GO:0003723 ... Q72HR2 30936299
    131186 6n1d:AL23 (3.2) BS02 MG ? GO:0000027 ... Q72I06 30936299
    131187 6n1d:AL25 (3.2) BS03 MG ? GO:0003723 ... Q72IA7 30936299
    131188 6n1d:AL27 (3.2) BS03 MG ? GO:0003735 ... Q72HR3 30936299
    131189 6n1d:AL28 (3.2) BS02 MG ? GO:0003735 ... Q72G84 30936299
    131190 6n1d:AL34 (3.2) BS02 MG ? GO:0003735 ... P80340 30936299
    131191 6n1d:AS02 (3.2) BS02 MG ? GO:0003735 ... P62662 30936299
    131192 6n1d:AS06 (3.2) BS02 MG ? GO:0003735 ... P62666 30936299
    131193 6n1d:AS18 (3.2) BS02 MG ? GO:0003735 ... P62659 30936299
    131194 6n1d:BL01 (3.2) BS03 MG ? GO:0000049 ... Q72GV9 30936299
    131195 6n1d:BL02 (3.2) BS03 MG ? GO:0002181 ... Q72I07 30936299
    131196 6n1d:BL02 (3.2) BS04 MG ? GO:0002181 ... Q72I07 30936299
    131197 6n1d:BL02 (3.2) BS05 MG ? GO:0002181 ... Q72I07 30936299
    131198 6n1d:BL02 (3.2) BS06 MG ? GO:0002181 ... Q72I07 30936299
    131199 6n1d:BL02 (3.2) BS07 MG ? GO:0002181 ... Q72I07 30936299
    131200 6n1d:BL03 (3.2) BS02 MG ? GO:0003735 ... Q72I04 30936299
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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