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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    130201 6lrt:S (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    130202 6lrt:V (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    130203 6lru:A (2.4) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 N/A
    130204 6lrx:A (1.702) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 N/A
    130205 6ls0:A (1.87) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130206 6ls0:A (1.87) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130207 6ls0:B (1.87) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130208 6ls0:B (1.87) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130209 6ls0:C (1.87) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130210 6ls0:H (1.87) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130211 6ls0:H (1.87) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130212 6ls3:A (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130213 6ls3:A (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130214 6ls3:A (2.815) BS03 MG 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130215 6ls3:B (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130216 6ls3:B (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130217 6ls3:B (2.815) BS03 MG 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130218 6ls3:C (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130219 6ls3:C (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130220 6ls3:D (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130221 6ls3:D (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130222 6ls3:E (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130223 6ls3:E (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130224 6ls3:F (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130225 6ls3:F (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130226 6ls3:G (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130227 6ls3:G (2.815) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130228 6ls3:H (2.815) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130229 6ls3:H (2.815) BS02 MG 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    130230 6ls4:A (2.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 32931884
    130231 6ls4:C (2.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 32931884
    130232 6ls4:C (2.4) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 32931884
    130233 6ls5:A (2.031) BS02 MG 3.1.3.11 GO:0000122 ... P09467 32375478
    130234 6ls5:B (2.031) BS03 MG 3.1.3.11 GO:0000122 ... P09467 32375478
    130235 6ls5:C (2.031) BS02 MG 3.1.3.11 GO:0000122 ... P09467 32375478
    130236 6ls5:D (2.031) BS02 MG 3.1.3.11 GO:0000122 ... P09467 32375478
    130237 6lsb:A (2.0) BS02 ZN 2.3.1.48 N/A Q92794 33290558
    130238 6lsb:A (2.0) BS03 ZN 2.3.1.48 N/A Q92794 33290558
    130239 6lsb:A (2.0) BS04 ZN 2.3.1.48 N/A Q92794 33290558
    130240 6lsb:A (2.0) BS05 ZN 2.3.1.48 N/A Q92794 33290558
    130241 6lse:A (2.25) BS03 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... E5RPG3 32451382
    130242 6lsf:A (2.152) BS03 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... E5RPG3 32451382
    130243 6lsg:A (2.14) BS03 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... E5RPG3 32451382
    130244 6lsh:A (2.231) BS03 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... E5RPG3 32451382
    130245 6lsm:A (2.751) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    130246 6lsm:C (2.751) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    130247 6lsn:A (2.445) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    130248 6lsn:C (2.445) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    130249 6lsr:a (3.13) BS02 MG ? GO:0002181 ... P84098 32669547
    130250 6lsr:e (3.13) BS02 MG ? GO:0000122 ... P62829 32669547
    130251 6lsr:m (3.13) BS02 MG ? GO:0002181 ... P62917 32669547
    130252 6lsr:w (3.13) BS03 MG ? GO:0000463 ... P18124 32669547
    130253 6lss:4 (3.23) BS04 MG ? GO:0000079 ... Q9BZE4 32669547
    130254 6lss:F (3.23) BS02 MG ? GO:0002181 ... P49207 32669547
    130255 6lss:k (3.23) BS02 MG ? GO:0002181 ... P62910 32669547
    130256 6lss:m (3.23) BS02 MG ? GO:0002181 ... P62917 32669547
    130257 6lss:n (3.23) BS02 MG ? GO:0000049 ... P18077 32669547
    130258 6lsv:A (2.651) BS03 FE 1.14.11.- GO:0005506 ... Q9FFF6 33516967
    130259 6lsv:B (2.651) BS03 FE 1.14.11.- GO:0005506 ... Q9FFF6 33516967
    130260 6lt4:A (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130261 6lt4:B (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130262 6lt4:C (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130263 6lt4:D (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130264 6lt4:E (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130265 6lt4:F (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130266 6lt4:G (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130267 6lt4:H (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130268 6lt4:I (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130269 6lt4:J (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130270 6lt4:K (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130271 6lt4:L (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130272 6lt4:M (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130273 6lt4:N (4.5) BS03 MG ? GO:0005524 ... A0A0H2ZMB9 32910525
    130274 6lth:L (3.0) BS01 ZN ? GO:0000785 ... O14497 32001526
    130275 6ltj:L (3.7) BS01 ZN ? GO:0003677 ... O14497 32001526
    130276 6ltr:A (2.51) BS05 MG N/A N/A N/A 33067443
    130277 6lts:B (3.45) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 32127479
    130278 6lts:D (3.45) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    130279 6lts:D (3.45) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    130280 6lts:D (3.45) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    130281 6lts:D (3.45) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    130282 6lts:F (3.45) BS02 MG ? GO:0003677 ... Q5SKW1 32127479
    130283 6ltu:A (2.57) BS05 MG N/A N/A N/A 33067443
    130284 6ltu:A (2.57) BS06 MG N/A N/A N/A 33067443
    130285 6lu8:F (3.13) BS02 MG ? GO:0002181 ... P49207 32669547
    130286 6lu8:e (3.13) BS02 MG ? GO:0000122 ... P62829 32669547
    130287 6lu8:k (3.13) BS02 MG ? GO:0002181 ... P62910 32669547
    130288 6lu8:m (3.13) BS02 MG ? GO:0002181 ... P62917 32669547
    130289 6lu8:n (3.13) BS02 MG ? GO:0000049 ... P18077 32669547
    130290 6lug:A (1.9) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    130291 6lug:A (1.9) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    130292 6lug:B (1.9) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    130293 6lug:B (1.9) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    130294 6luh:A (1.5) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    130295 6luh:A (1.5) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    130296 6luh:B (1.5) BS01 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    130297 6luh:B (1.5) BS02 MN 3.5.3.25 GO:0004053 ... D2Z025 32496212
    130298 6luw:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130299 6lux:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130300 6luy:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130301 6luz:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130302 6lv1:A (1.2) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130303 6lv2:A (1.2) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130304 6lv3:A (1.2) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130305 6lv4:A (1.2) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130306 6lv9:A (1.2) BS01 CU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130307 6lva:A (1.2) BS01 CU 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32917908
    130308 6lvb:A (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130309 6lvb:C (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130310 6lvb:E (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130311 6lvb:G (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130312 6lvc:A (3.0) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130313 6lvc:C (3.0) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130314 6lvu:A (2.294) BS01 ZN ? GO:0000035 ... Q9WZD0 32283632
    130315 6lvu:B (2.294) BS01 ZN ? GO:0000035 ... Q9WZD0 32283632
    130316 6lvu:B (2.294) BS02 ZN ? GO:0000035 ... Q9WZD0 32283632
    130317 6lvv:A (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130318 6lvv:C (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130319 6lvv:E (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130320 6lvv:G (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130321 6lvv:I (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130322 6lvv:K (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130323 6lvv:M (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130324 6lvv:O (2.8) BS01 FE 3.5.1.56 GO:0016787 ... I6NT79 32452120
    130325 6lvw:A (2.493) BS01 ZN 3.2.1.23 GO:0004565 ... B9LW38 33081237
    130326 6lx1:A (2.03) BS03 MG 2.4.1.25 GO:0004134 ... Q06801 32808707
    130327 6lxd:A (3.9) BS04 ZN 3.1.26.3 GO:0003723 ... Q9NRR4 32220645
    130328 6lxd:A (3.9) BS05 ZN 3.1.26.3 GO:0003723 ... Q9NRR4 32220645
    130329 6lxe:A (4.2) BS03 ZN 3.1.26.3 GO:0003723 ... Q9NRR4 32220645
    130330 6lxe:A (4.2) BS04 ZN 3.1.26.3 GO:0003723 ... Q9NRR4 32220645
    130331 6lxi:A (2.5) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 33024040
    130332 6lxi:A (2.5) BS03 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 33024040
    130333 6lxi:B (2.5) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 33024040
    130334 6lxi:B (2.5) BS03 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 33024040
    130335 6lxj:A (2.903) BS04 CA 3.2.1.18 GO:0004308 ... A0A024E1X5 33024040
    130336 6lxj:B (2.903) BS05 CA 3.2.1.18 GO:0004308 ... A0A024E1X5 33024040
    130337 6lxj:C (2.903) BS05 CA 3.2.1.18 GO:0004308 ... A0A024E1X5 33024040
    130338 6lxj:D (2.903) BS05 CA 3.2.1.18 GO:0004308 ... A0A024E1X5 33024040
    130339 6lxk:A (3.608) BS01 CA 3.2.1.18 GO:0004308 ... A0A5P1N996 33024040
    130340 6lxk:A (3.608) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P1N996 33024040
    130341 6lxk:B (3.608) BS01 CA 3.2.1.18 GO:0004308 ... A0A5P1N996 33024040
    130342 6lxk:B (3.608) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P1N996 33024040
    130343 6lxk:C (3.608) BS01 CA 3.2.1.18 GO:0004308 ... A0A5P1N996 33024040
    130344 6lxk:C (3.608) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P1N996 33024040
    130345 6lxk:D (3.608) BS01 CA 3.2.1.18 GO:0004308 ... A0A5P1N996 33024040
    130346 6lxk:D (3.608) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P1N996 33024040
    130347 6lxs:A (1.58) BS01 CA ? GO:0005618 ... Q2G0L5 32250096
    130348 6lxt:E (2.9) BS01 ZN ? GO:0016020 ... P0DTC2 32231345
    130349 6lxv:A (2.1) BS02 CA N/A GO:0003824 ... N/A 35181457
    130350 6lxv:B (2.1) BS03 CA N/A GO:0003824 ... N/A 35181457
    130351 6lxv:C (2.1) BS02 CA N/A GO:0003824 ... N/A 35181457
    130352 6lxv:D (2.1) BS03 CA N/A GO:0003824 ... N/A 35181457
    130353 6lxv:E (2.1) BS02 CA N/A GO:0003824 ... N/A 35181457
    130354 6lxv:F (2.1) BS03 CA N/A GO:0003824 ... N/A 35181457
    130355 6lxv:G (2.1) BS02 CA N/A GO:0003824 ... N/A 35181457
    130356 6lxv:H (2.1) BS03 CA N/A GO:0003824 ... N/A 35181457
    130357 6lxx:A (2.4) BS01 CA ? GO:0005509 ... F6VRB7 N/A
    130358 6ly3:A (1.8959) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 32484330
    130359 6ly6:A (2.50013) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 32484330
    130360 6ly7:A (2.09447) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 32484330
    130361 6lya:A (1.5907) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 32484330
    130362 6lyb:A (1.90366) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 32484330
    130363 6lyf:D (2.8) BS01 MG 3.1.30.- GO:0003676 ... O08600 32192768
    130364 6lyf:D (2.8) BS02 MG 3.1.30.- GO:0003676 ... O08600 32192768
    130365 6lyk:A (1.7) BS03 MG 6.3.5.3 GO:0004642 ... P74881 N/A
    130366 6lyl:A (2.1) BS01 MG 6.3.5.3 GO:0004642 ... P74881 N/A
    130367 6lym:A (2.46) BS02 MG 6.3.5.3 GO:0004642 ... P74881 N/A
    130368 6lyo:A (1.87) BS02 MG 6.3.5.3 GO:0004642 ... P74881 N/A
    130369 6lz1:A (3.2) BS01 ZN 3.2.1.24 GO:0000328 ... Q9UT61 32981237
    130370 6lz1:B (3.2) BS01 ZN 3.2.1.24 GO:0000328 ... Q9UT61 32981237
    130371 6lz1:C (3.2) BS01 ZN 3.2.1.24 GO:0000328 ... Q9UT61 32981237
    130372 6lz1:D (3.2) BS01 ZN 3.2.1.24 GO:0000328 ... Q9UT61 32981237
    130373 6lzb:A (1.29) BS01 CO 3.4.11.18 GO:0006508 ... P53582 34329997
    130374 6lzb:A (1.29) BS02 CO 3.4.11.18 GO:0006508 ... P53582 34329997
    130375 6lzc:A (1.35) BS01 CO 3.4.11.18 GO:0006508 ... P53582 34329997
    130376 6lzc:A (1.35) BS02 CO 3.4.11.18 GO:0006508 ... P53582 34329997
    130377 6lzg:A (2.5) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 32275855
    130378 6lzn:A (1.5) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 33310458
    130379 6lzn:A (1.5) BS02 CA 3.4.24.27 GO:0004222 ... P00800 33310458
    130380 6lzn:A (1.5) BS03 CA 3.4.24.27 GO:0004222 ... P00800 33310458
    130381 6lzn:A (1.5) BS04 CA 3.4.24.27 GO:0004222 ... P00800 33310458
    130382 6lzo:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 33310458
    130383 6lzo:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 33310458
    130384 6lzq:A (1.8) BS01 MG N/A GO:0043190 ... N/A 34400168
    130385 6lzq:A (1.8) BS02 MG N/A GO:0043190 ... N/A 34400168
    130386 6lzq:A (1.8) BS03 CA N/A GO:0043190 ... N/A 34400168
    130387 6lzt:A (1.853) BS01 MG N/A GO:0043190 ... N/A 34400168
    130388 6lzt:A (1.853) BS02 CA N/A GO:0043190 ... N/A 34400168
    130389 6lzu:A (1.9) BS01 CA N/A GO:0043190 ... N/A 34400168
    130390 6lzu:A (1.9) BS02 CA N/A GO:0043190 ... N/A 34400168
    130391 6lzv:A (2.2) BS01 CA N/A GO:0043190 ... N/A 34400168
    130392 6lzv:A (2.2) BS02 CA N/A GO:0043190 ... N/A 34400168
    130393 6lzw:A (1.9) BS01 CA N/A GO:0043190 ... N/A 34400168
    130394 6lzw:A (1.9) BS02 MG N/A GO:0043190 ... N/A 34400168
    130395 6lzz:A (2.40004) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 N/A
    130396 6lzz:B (2.40004) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 N/A
    130397 6m00:A (3.2) BS01 CO 3.4.11.18 GO:0004177 ... P56218 N/A
    130398 6m00:A (3.2) BS02 CO 3.4.11.18 GO:0004177 ... P56218 N/A
    130399 6m0j:A (2.45) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 32225176
    130400 6m0v:A (3.0) BS04 MG 3.1.-.- GO:0003676 ... Q03LF7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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