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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    130001 6lkp:C (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    130002 6lkp:D (2.9) BS01 ZN N/A GO:0008199 ... N/A 32170832
    130003 6lkp:D (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    130004 6lkp:E (2.9) BS01 ZN N/A GO:0008199 ... N/A 32170832
    130005 6lkp:E (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    130006 6lkp:F (2.9) BS01 ZN N/A GO:0008199 ... N/A 32170832
    130007 6lkp:F (2.9) BS02 FE N/A GO:0008199 ... N/A 32170832
    130008 6lkr:A (1.84) BS01 CA ? N/A Q9D8Q7 32139512
    130009 6lkr:B (1.84) BS01 CA ? N/A Q9D8Q7 32139512
    130010 6lks:A (3.24) BS02 ZN ? GO:0019031 ... A7LI25 32963316
    130011 6lks:G (3.24) BS01 ZN ? GO:0019031 ... A7LI25 32963316
    130012 6lks:I (3.24) BS01 ZN ? GO:0019031 ... A7LI25 32963316
    130013 6lks:K (3.24) BS01 ZN ? GO:0019031 ... A7LI25 32963316
    130014 6lkx:A (2.998) BS01 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    130015 6lkx:A (2.998) BS02 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    130016 6lkx:A (2.998) BS03 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    130017 6lkx:B (2.998) BS01 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    130018 6lkx:B (2.998) BS02 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    130019 6lkx:B (2.998) BS03 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    130020 6ll0:A (2.2) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130021 6ll0:B (2.2) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130022 6ll0:B (2.2) BS03 MG ? GO:0046872 ... Q84II6 N/A
    130023 6ll0:C (2.2) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130024 6ll1:A (2.15) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130025 6ll1:B (2.15) BS02 MG ? GO:0046872 ... Q84II6 N/A
    130026 6ll1:B (2.15) BS03 FE2 ? GO:0046872 ... Q84II6 N/A
    130027 6ll1:C (2.15) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130028 6ll2:A (1.75) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    130029 6ll2:A (1.75) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    130030 6ll4:A (2.2) BS02 FE ? GO:0046872 ... Q84II6 N/A
    130031 6ll4:B (2.2) BS02 FE ? GO:0046872 ... Q84II6 N/A
    130032 6ll4:B (2.2) BS04 MG ? GO:0046872 ... Q84II6 N/A
    130033 6ll4:C (2.2) BS02 FE ? GO:0046872 ... Q84II6 N/A
    130034 6ll7:A (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130035 6ll7:A (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130036 6ll7:A (2.2) BS03 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130037 6ll7:B (2.2) BS01 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130038 6ll7:B (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130039 6ll7:B (2.2) BS03 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130040 6ll7:C (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130041 6ll7:C (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130042 6ll7:C (2.2) BS03 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130043 6ll7:D (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130044 6ll7:D (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130045 6ll8:A (1.3) BS01 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130046 6ll8:A (1.3) BS02 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130047 6ll8:A (1.3) BS03 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130048 6ll8:A (1.3) BS04 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130049 6ll8:A (1.3) BS05 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130050 6ll8:B (1.3) BS01 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130051 6ll8:B (1.3) BS02 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130052 6ll8:B (1.3) BS03 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130053 6ll8:B (1.3) BS04 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130054 6ll8:B (1.3) BS05 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    130055 6lla:A (1.88) BS02 MG N/A GO:0003856 ... N/A 32661075
    130056 6lla:B (1.88) BS02 MG N/A GO:0003856 ... N/A 32661075
    130057 6lla:C (1.88) BS02 MG N/A GO:0003856 ... N/A 32661075
    130058 6lla:D (1.88) BS02 MG N/A GO:0003856 ... N/A 32661075
    130059 6llb:A (2.6) BS02 ZN N/A GO:0003723 ... N/A 32552320
    130060 6llb:A (2.6) BS03 ZN N/A GO:0003723 ... N/A 32552320
    130061 6llb:B (2.6) BS02 ZN N/A GO:0003723 ... N/A 32552320
    130062 6llb:B (2.6) BS03 ZN N/A GO:0003723 ... N/A 32552320
    130063 6lle:A (2.9) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    130064 6lle:A (2.9) BS03 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    130065 6lle:A (2.9) BS04 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    130066 6llf:A (1.93) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130067 6llf:B (1.93) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130068 6llf:C (1.93) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130069 6llh:A (1.99) BS01 FE2 ? GO:0046872 ... Q84II6 N/A
    130070 6llh:B (1.99) BS01 FE2 ? GO:0046872 ... Q84II6 N/A
    130071 6llh:C (1.99) BS01 FE2 ? GO:0046872 ... Q84II6 N/A
    130072 6llk:A (2.3) BS02 FE2 ? GO:0046872 ... Q84II6 N/A
    130073 6llm:A (1.9) BS01 FE2 ? GO:0046872 ... Q84II6 N/A
    130074 6lly:A (2.8) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    130075 6lm1:A (1.9) BS02 MG ? GO:0005216 ... A0A218QMM7 33028840
    130076 6lm1:C (1.9) BS02 MG ? GO:0005216 ... A0A218QMM7 33028840
    130077 6lm2:A (2.13008) BS01 ZN ? GO:0005737 ... P76344 N/A
    130078 6lm2:A (2.13008) BS02 ZN ? GO:0005737 ... P76344 N/A
    130079 6ln0:A (2.455) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... A0A222YV61 33327866
    130080 6ln5:A (2.8) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    130081 6ln5:A (2.8) BS03 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    130082 6ln5:A (2.8) BS04 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    130083 6ln6:A (2.9) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    130084 6ln6:A (2.9) BS03 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    130085 6ln6:A (2.9) BS04 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    130086 6ln7:A (2.8) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    130087 6ln7:A (2.8) BS03 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    130088 6ln7:A (2.8) BS04 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    130089 6ln8:A (3.1) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    130090 6ln9:A (3.4) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    130091 6lna:A (1.701) BS01 MN 2.7.7.108 GO:0000287 ... P77649 32966796
    130092 6lna:B (1.701) BS01 MN 2.7.7.108 GO:0000287 ... P77649 32966796
    130093 6lnd:K (2.001) BS01 ZN N/A N/A N/A 31913359
    130094 6lnd:K (2.001) BS02 ZN N/A N/A N/A 31913359
    130095 6lnh:A (2.34) BS01 FE 1.14.11.45 GO:0008198 ... E2GIN1 N/A
    130096 6lnh:B (2.34) BS01 FE 1.14.11.45 GO:0008198 ... E2GIN1 N/A
    130097 6lnh:C (2.34) BS01 FE 1.14.11.45 GO:0008198 ... E2GIN1 N/A
    130098 6lnh:D (2.34) BS01 FE 1.14.11.45 GO:0008198 ... E2GIN1 N/A
    130099 6lnk:A (2.639) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    130100 6lnk:B (2.639) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    130101 6lnr:A (1.66) BS01 MG N/A GO:0004568 ... N/A 32750481
    130102 6lp1:A (2.01) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 32763239
    130103 6lp1:B (2.01) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 32763239
    130104 6lp1:C (2.01) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 32763239
    130105 6lp1:D (2.01) BS01 CA 2.8.3.5 GO:0005737 ... Q386P1 32763239
    130106 6lp5:A (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130107 6lp5:A (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130108 6lp5:B (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130109 6lp5:B (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130110 6lp5:C (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130111 6lp5:C (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130112 6lp5:D (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130113 6lp5:D (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130114 6lp5:E (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130115 6lp5:E (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130116 6lp5:F (1.98) BS01 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130117 6lp5:F (1.98) BS02 FE 1.16.3.1 GO:0004322 ... D2JIV0 31983429
    130118 6lpd:A (1.65) BS01 FE2 N/A GO:0006826 ... N/A 33448656
    130119 6lpd:A (1.65) BS02 FE2 N/A GO:0006826 ... N/A 33448656
    130120 6lpd:B (1.65) BS01 FE2 N/A GO:0006826 ... N/A 33448656
    130121 6lpd:B (1.65) BS02 FE2 N/A GO:0006826 ... N/A 33448656
    130122 6lpd:C (1.65) BS01 FE2 N/A GO:0006826 ... N/A 33448656
    130123 6lpd:C (1.65) BS02 FE2 N/A GO:0006826 ... N/A 33448656
    130124 6lpd:D (1.65) BS01 FE2 N/A GO:0006826 ... N/A 33448656
    130125 6lpd:E (1.65) BS01 FE2 N/A GO:0006826 ... N/A 33448656
    130126 6lpd:F (1.65) BS01 FE2 N/A GO:0006826 ... N/A 33448656
    130127 6lpd:F (1.65) BS02 FE2 N/A GO:0006826 ... N/A 33448656
    130128 6lpe:A (1.99) BS01 MG 1.16.3.1 GO:0004322 ... B3TFG2 33448656
    130129 6lpe:B (1.99) BS01 MG 1.16.3.1 GO:0004322 ... B3TFG2 33448656
    130130 6lpe:C (1.99) BS01 MG 1.16.3.1 GO:0004322 ... B3TFG2 33448656
    130131 6lpe:D (1.99) BS01 MG 1.16.3.1 GO:0004322 ... B3TFG2 33448656
    130132 6lpi:A (2.849) BS03 MG 2.2.1.6 GO:0000287 ... P08142 32538427
    130133 6lpi:B (2.849) BS03 MG 2.2.1.6 GO:0000287 ... P08142 32538427
    130134 6lpi:C (2.849) BS04 MG 2.2.1.6 GO:0000287 ... P08142 32538427
    130135 6lpi:D (2.849) BS04 MG 2.2.1.6 GO:0000287 ... P08142 32538427
    130136 6lpp:A (2.65) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130137 6lpp:B (2.65) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130138 6lpq:A (2.8) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130139 6lpq:B (2.8) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130140 6lps:A (2.21357) BS01 MG 3.2.1.8 GO:0004553 ... Q17TM8 N/A
    130141 6lps:A (2.21357) BS02 MG 3.2.1.8 GO:0004553 ... Q17TM8 N/A
    130142 6lpt:A (2.621) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130143 6lpt:B (2.621) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130144 6lpu:A (2.923) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130145 6lpu:B (2.923) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130146 6lpx:A (2.8) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130147 6lpx:B (2.8) BS02 ZN 1.1.99.39 GO:0003824 ... Q8N465 33431826
    130148 6lq9:A (2.5) BS02 MG 3.6.5.- GO:0000054 ... P62826 33974430
    130149 6lqe:A (1.9) BS02 ZN ? N/A Q6NQ79 32358072
    130150 6lqe:A (1.9) BS03 ZN ? N/A Q6NQ79 32358072
    130151 6lqf:A (1.5) BS04 ZN ? GO:0003677 ... Q6NQ79 32358072
    130152 6lqf:A (1.5) BS05 ZN ? GO:0003677 ... Q6NQ79 32358072
    130153 6lqf:A (1.5) BS06 ZN ? GO:0003677 ... Q6NQ79 32358072
    130154 6lqk:A (2.499) BS01 MG N/A GO:0005219 ... N/A 32781205
    130155 6lqm:F (3.09) BS02 MG ? GO:0002181 ... P49207 32669547
    130156 6lqm:m (3.09) BS02 MG ? GO:0002181 ... P62917 32669547
    130157 6lqm:t (3.09) BS02 MG ? GO:0002181 ... P62910 32669547
    130158 6lqm:w (3.09) BS03 MG ? GO:0000463 ... P18124 32669547
    130159 6lqp:5K (3.2) BS04 ZN ? GO:0000447 ... Q05498 32943522
    130160 6lqp:RJ (3.2) BS05 MG ? GO:0000462 ... Q08965 32943522
    130161 6lqp:Sc (3.2) BS02 ZN ? GO:0000028 ... P35997 32943522
    130162 6lqq:5K (4.1) BS03 ZN ? GO:0000447 ... Q05498 32943522
    130163 6lqq:RJ (4.1) BS05 MG ? GO:0000462 ... Q08965 32943522
    130164 6lqq:Sc (4.1) BS02 ZN ? GO:0000028 ... P35997 32943522
    130165 6lqr:5K (8.6) BS03 ZN ? GO:0000447 ... Q05498 32943522
    130166 6lqr:RJ (8.6) BS04 MG ? GO:0000462 ... Q08965 32943522
    130167 6lqr:Sc (8.6) BS02 ZN ? GO:0000028 ... P35997 32943522
    130168 6lqs:5K (3.8) BS02 ZN ? GO:0000447 ... Q05498 32943522
    130169 6lqs:RJ (3.8) BS04 MG ? GO:0000462 ... Q08965 32943522
    130170 6lqt:5K (4.9) BS02 ZN ? GO:0000447 ... Q05498 32943522
    130171 6lqt:RJ (4.9) BS04 MG ? GO:0000462 ... Q08965 32943522
    130172 6lqu:5K (3.7) BS04 ZN ? GO:0000447 ... Q05498 32943522
    130173 6lqu:RJ (3.7) BS05 MG ? GO:0000462 ... Q08965 32943522
    130174 6lqv:5K (4.8) BS03 ZN ? GO:0000447 ... Q05498 32943522
    130175 6lqv:RJ (4.8) BS04 MG ? GO:0000462 ... Q08965 32943522
    130176 6lqw:A (2.6) BS02 CA 1.11.1.7 GO:0004601 ... L8ICE9 N/A
    130177 6lqw:B (2.6) BS02 CA 1.11.1.7 GO:0004601 ... L8ICE9 N/A
    130178 6lrb:E (2.65) BS01 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 32016421
    130179 6lrc:A (1.831) BS02 ZN 2.7.7.86 N/A Q8N884 32459092
    130180 6lrc:B (1.831) BS02 ZN 2.7.7.86 N/A Q8N884 32459092
    130181 6lrd:A (1.90134) BS03 MN ? GO:0003676 ... D0EM60 32870272
    130182 6lrd:A (1.90134) BS04 MN ? GO:0003676 ... D0EM60 32870272
    130183 6lre:A (2.65) BS01 ZN 2.7.7.86 N/A Q8N884 32459092
    130184 6lre:B (2.65) BS01 ZN 2.7.7.86 N/A Q8N884 32459092
    130185 6lri:A (2.5) BS02 ZN 2.7.7.86 N/A Q8N884 32459092
    130186 6lri:B (2.5) BS02 ZN 2.7.7.86 N/A Q8N884 32459092
    130187 6lrj:A (3.0) BS02 ZN 2.7.7.86 N/A Q8N884 32459092
    130188 6lrj:B (3.0) BS02 ZN 2.7.7.86 N/A Q8N884 32459092
    130189 6lrk:A (2.25) BS02 ZN 2.7.7.86 N/A Q8N884 32459092
    130190 6lrk:B (2.25) BS02 ZN 2.7.7.86 N/A Q8N884 32459092
    130191 6lrl:A (2.655) BS01 ZN 2.7.7.86 N/A Q8N884 32459092
    130192 6lrl:B (2.655) BS01 ZN 2.7.7.86 N/A Q8N884 32459092
    130193 6lrm:A (1.45) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 34603793
    130194 6lrm:B (1.45) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 34603793
    130195 6lrt:A (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    130196 6lrt:D (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    130197 6lrt:G (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    130198 6lrt:J (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    130199 6lrt:M (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    130200 6lrt:P (2.9) BS01 MN 4.1.3.1 GO:0003824 ... A9WDE7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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