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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    129601 6l1w:A (2.194) BS04 ZN ? GO:0046872 ... Q3UPF5 31914396
    129602 6l1w:A (2.194) BS05 ZN ? GO:0046872 ... Q3UPF5 31914396
    129603 6l1x:A (3.15) BS03 FE 1.7.99.7 GO:0004129 ... C6S880 32431824
    129604 6l1x:A (3.15) BS04 CA 1.7.99.7 GO:0004129 ... C6S880 32431824
    129605 6l1x:A (3.15) BS05 ZN 1.7.99.7 GO:0004129 ... C6S880 32431824
    129606 6l1x:A (3.15) BS06 ZN 1.7.99.7 GO:0004129 ... C6S880 32431824
    129607 6l1x:A (3.15) BS07 ZN 1.7.99.7 GO:0004129 ... C6S880 32431824
    129608 6l2d:A (1.198) BS01 CU ? GO:0046872 ... Q9X1H0 32073197
    129609 6l2d:B (1.198) BS01 CU ? GO:0046872 ... Q9X1H0 32073197
    129610 6l2e:A (1.201) BS01 CU ? GO:0046872 ... Q9X1H0 32073197
    129611 6l2e:B (1.201) BS01 CU ? GO:0046872 ... Q9X1H0 32073197
    129612 6l2f:A (1.23) BS01 CU ? GO:0046872 ... Q9X1H0 32073197
    129613 6l2f:B (1.23) BS01 CU ? GO:0046872 ... Q9X1H0 32073197
    129614 6l2h:A (2.096) BS01 CA 2.4.1.19 GO:0004556 ... P04830 N/A
    129615 6l2h:A (2.096) BS02 CA 2.4.1.19 GO:0004556 ... P04830 N/A
    129616 6l2i:B (1.69) BS02 MG 1.1.1.86 GO:0000287 ... Q04M32 N/A
    129617 6l2i:B (1.69) BS03 MG 1.1.1.86 GO:0000287 ... Q04M32 N/A
    129618 6l2j:A (1.933) BS07 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    129619 6l2j:A (1.933) BS08 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    129620 6l2j:A (1.933) BS09 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    129621 6l2j:A (1.933) BS10 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    129622 6l2j:A (1.933) BS11 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    129623 6l2l:A (2.40046) BS01 ZN ? GO:0003824 ... A0A0C2W6A5 32270856
    129624 6l2m:A (2.30255) BS01 ZN ? GO:0003824 ... A0A0C2W6A5 32270856
    129625 6l2p:A (2.3) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 31821989
    129626 6l2p:B (2.3) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 31821989
    129627 6l2q:A (2.3) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 31821989
    129628 6l2q:B (2.3) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 31821989
    129629 6l32:A (2.3) BS01 CA 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    129630 6l32:A (2.3) BS03 K 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    129631 6l32:A (2.3) BS04 K 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    129632 6l32:A (2.3) BS05 ZN 1.11.1.7 GO:0004601 ... L8ICE9 33427997
    129633 6l3e:A (1.6) BS07 MG ? GO:0008643 ... P19576 N/A
    129634 6l3h:A (3.06) BS03 FE 1.7.99.7 GO:0004129 ... C6S880 32431824
    129635 6l3h:A (3.06) BS04 CA 1.7.99.7 GO:0004129 ... C6S880 32431824
    129636 6l3h:B (3.06) BS03 FE 1.7.99.7 GO:0004129 ... C6S880 32431824
    129637 6l3h:B (3.06) BS04 CA 1.7.99.7 GO:0004129 ... C6S880 32431824
    129638 6l3s:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... A0A286S0G7 N/A
    129639 6l3s:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... A0A286S0G7 N/A
    129640 6l3s:B (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... A0A286S0G7 N/A
    129641 6l3s:B (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... A0A286S0G7 N/A
    129642 6l3u:A (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    129643 6l3u:A (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    129644 6l3u:B (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    129645 6l3u:B (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    129646 6l3u:C (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    129647 6l3u:C (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    129648 6l3u:D (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    129649 6l3u:D (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    129650 6l3u:E (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    129651 6l3u:E (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    129652 6l3u:F (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    129653 6l3u:F (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    129654 6l3w:A (2.6) BS01 FE N/A GO:0004462 ... N/A 31771973
    129655 6l46:A (1.3) BS01 CU N/A N/A N/A 32041886
    129656 6l46:A (1.3) BS02 CU N/A N/A N/A 32041886
    129657 6l46:A (1.3) BS03 CU N/A N/A N/A 32041886
    129658 6l4c:A (3.191) BS01 CU ? GO:0004784 ... Q8S4P9 31753489
    129659 6l4c:B (3.191) BS01 CU ? GO:0004784 ... Q8S4P9 31753489
    129660 6l4c:C (3.191) BS01 CU ? GO:0004784 ... Q8S4P9 31753489
    129661 6l4n:A (2.431) BS01 MG ? GO:0004869 ... P02881
    P02882
    N/A
    129662 6l4n:A (2.431) BS02 MG ? GO:0004869 ... P02881
    P02882
    N/A
    129663 6l4n:A (2.431) BS03 MG ? GO:0004869 ... P02881
    P02882
    N/A
    129664 6l54:C (3.43) BS02 MG ? GO:0000184 ... Q9H0W8 31729466
    129665 6l55:A (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129666 6l55:B (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129667 6l55:C (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129668 6l55:D (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129669 6l55:E (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129670 6l55:F (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129671 6l55:G (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129672 6l55:H (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129673 6l55:I (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129674 6l55:J (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129675 6l55:K (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129676 6l55:L (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129677 6l56:A (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129678 6l56:B (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129679 6l56:C (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129680 6l56:D (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129681 6l56:E (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129682 6l56:F (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129683 6l56:G (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129684 6l56:H (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129685 6l56:I (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129686 6l56:J (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129687 6l56:K (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129688 6l56:L (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129689 6l56:M (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129690 6l56:N (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129691 6l56:O (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129692 6l56:P (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129693 6l56:Q (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129694 6l56:R (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129695 6l56:S (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129696 6l56:T (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129697 6l56:U (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129698 6l56:V (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129699 6l56:W (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129700 6l56:X (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129701 6l57:A (2.302) BS01 MG 1.1.1.41 GO:0000287 ... P50213 32277159
    129702 6l57:B (2.302) BS01 MG ? GO:0000287 ... P51553 32277159
    129703 6l58:A (3.90271) BS01 CU 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129704 6l58:B (3.90271) BS01 CU 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129705 6l58:C (3.90271) BS01 CU 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129706 6l58:D (3.90271) BS01 CU 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    129707 6l59:A (2.254) BS02 MG 1.1.1.41 GO:0000287 ... P50213 32277159
    129708 6l59:B (2.254) BS02 MG ? GO:0000287 ... P51553 32277159
    129709 6l5g:A (2.5) BS01 CA 1.11.1.7 GO:0004601 ... P80025 33427997
    129710 6l5g:A (2.5) BS03 K 1.11.1.7 GO:0004601 ... P80025 33427997
    129711 6l5g:A (2.5) BS04 K 1.11.1.7 GO:0004601 ... P80025 33427997
    129712 6l5g:A (2.5) BS05 ZN 1.11.1.7 GO:0004601 ... P80025 33427997
    129713 6l5t:A (1.72) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0006508 ... A0A385H8D7 32216114
    129714 6l65:A (1.8) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    129715 6l66:A (2.169) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    129716 6l6e:A (1.92) BS02 ZN 3.1.4.35 GO:0004114 ... O76074 32663396
    129717 6l6l:A (2.781) BS03 ZN ? GO:0003700 ... P43354 31723028
    129718 6l6l:A (2.781) BS04 ZN ? GO:0003700 ... P43354 31723028
    129719 6l6l:B (2.781) BS03 ZN ? GO:0003700 ... P43354 31723028
    129720 6l6l:B (2.781) BS04 ZN ? GO:0003700 ... P43354 31723028
    129721 6l6q:A (2.601) BS03 ZN ? GO:0003700 ... P43354 31723028
    129722 6l6q:A (2.601) BS04 ZN ? GO:0003700 ... P43354 31723028
    129723 6l6q:B (2.601) BS03 ZN ? GO:0003700 ... P43354 31723028
    129724 6l6q:B (2.601) BS04 ZN ? GO:0003700 ... P43354 31723028
    129725 6l6r:A (3.8) BS01 MG ? N/A O75581 33097721
    129726 6l6r:B (3.8) BS01 MG ? N/A O75581 33097721
    129727 6l6r:B (3.8) BS02 MG ? N/A O75581 33097721
    129728 6l6w:A (2.17) BS01 FE2 1.14.11.78 GO:0016491 ... A0A3B6UEU3 32074393
    129729 6l6x:A (2.18) BS02 FE2 1.14.11.78 GO:0016491 ... A0A3B6UEU3 32074393
    129730 6l72:A (2.501) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    129731 6l74:B (3.12) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 32127479
    129732 6l74:D (3.12) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    129733 6l74:D (3.12) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    129734 6l74:D (3.12) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    129735 6l74:F (3.12) BS03 MG ? GO:0003677 ... Q5SKW1 32127479
    129736 6l7d:A (3.0) BS02 MG 4.2.1.11 GO:0000015 ... P9WNL1 37860976
    129737 6l7s:A (2.41) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129738 6l7s:B (2.41) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129739 6l7s:B (2.41) BS02 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129740 6l7s:C (2.41) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129741 6l7s:D (2.41) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129742 6l7t:A (2.41) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129743 6l7t:B (2.41) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129744 6l7t:B (2.41) BS02 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129745 6l7t:C (2.41) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129746 6l7t:D (2.41) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129747 6l7u:A (2.24) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129748 6l7u:B (2.24) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129749 6l7u:C (2.24) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129750 6l7u:D (2.24) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    129751 6l7v:A (2.2) BS01 MN 3.6.1.74 GO:0004651 ... Q4E2I1 32381506
    129752 6l7w:A (2.6) BS01 MN 3.6.1.74 GO:0004651 ... Q4E2I1 32381506
    129753 6l7w:B (2.6) BS01 MN 3.6.1.74 GO:0004651 ... Q4E2I1 32381506
    129754 6l84:A (2.602) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 31971182
    129755 6l84:A (2.602) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 31971182
    129756 6l84:A (2.602) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 31971182
    129757 6l85:A (2.302) BS02 NA ? GO:0005315 ... Q9WY99 32821837
    129758 6l85:A (2.302) BS03 NA ? GO:0005315 ... Q9WY99 32821837
    129759 6l85:A (2.302) BS04 NA ? GO:0005315 ... Q9WY99 32821837
    129760 6l85:B (2.302) BS02 NA ? GO:0005315 ... Q9WY99 32821837
    129761 6l85:B (2.302) BS03 NA ? GO:0005315 ... Q9WY99 32821837
    129762 6l85:B (2.302) BS04 NA ? GO:0005315 ... Q9WY99 32821837
    129763 6l86:A (2.23) BS01 FE2 ? GO:0016491 ... A0A2H4T920 32074393
    129764 6l86:B (2.23) BS01 FE2 ? GO:0016491 ... A0A2H4T920 32074393
    129765 6l86:C (2.23) BS01 FE2 ? GO:0016491 ... A0A2H4T920 32074393
    129766 6l86:D (2.23) BS01 FE2 ? GO:0016491 ... A0A2H4T920 32074393
    129767 6l8n:A (3.6) BS01 ZN 3.6.4.- GO:0003676 ... Q6CJM4 33436623
    129768 6l8n:A (3.6) BS02 ZN 3.6.4.- GO:0003676 ... Q6CJM4 33436623
    129769 6l8s:A (1.58) BS01 CU N/A GO:0016491 ... N/A 32380017
    129770 6l8s:A (1.58) BS02 CU N/A GO:0016491 ... N/A 32380017
    129771 6l8s:B (1.58) BS01 CU N/A GO:0016491 ... N/A 32380017
    129772 6l8s:B (1.58) BS02 CU N/A GO:0016491 ... N/A 32380017
    129773 6l8s:B (1.58) BS05 MG N/A GO:0016491 ... N/A 32380017
    129774 6l8s:C (1.58) BS01 CU N/A GO:0016491 ... N/A 32380017
    129775 6l8s:C (1.58) BS02 CU N/A GO:0016491 ... N/A 32380017
    129776 6l8s:C (1.58) BS05 MG N/A GO:0016491 ... N/A 32380017
    129777 6l8s:C (1.58) BS06 MG N/A GO:0016491 ... N/A 32380017
    129778 6l94:A (3.10012) BS01 FE2 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... P0CB42 33068553
    129779 6l99:A (-1.00) BS01 ZN 2.3.2.31 N/A P50876 N/A
    129780 6l99:A (-1.00) BS02 ZN 2.3.2.31 N/A P50876 N/A
    129781 6l9c:X (1.14) BS01 CU 1.4.3.21 GO:0005507 ... P46881 32371483
    129782 6l9i:A (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    129783 6l9i:A (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    129784 6l9i:B (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    129785 6l9i:B (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    129786 6l9i:C (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    129787 6l9i:C (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    129788 6l9i:D (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    129789 6l9i:D (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    129790 6l9i:E (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    129791 6l9i:E (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    129792 6l9i:F (2.79) BS01 MN N/A GO:0033609 ... N/A N/A
    129793 6l9i:F (2.79) BS02 MN N/A GO:0033609 ... N/A N/A
    129794 6l9s:A (2.0) BS01 CU1 ? GO:0005507 ... A7NNM5 31933173
    129795 6l9t:A (1.89) BS01 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    129796 6l9t:A (1.89) BS02 ZN 1.11.1.7 GO:0004601 ... P80025 N/A
    129797 6l9z:N (2.5) BS03 CA ? GO:0000786 ... P06899 33590100
    129798 6la9:H (3.7) BS03 CA ? GO:0000786 ... P06899 32958761
    129799 6lac:A (1.3) BS01 ZN 4.2.1.1 GO:0004089 ... A4DA31 N/A
    129800 6lac:B (1.3) BS01 ZN 4.2.1.1 GO:0004089 ... A4DA31 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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