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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    128601 6k5z:A (2.33) BS02 ZN ? GO:0000166 ... Q8ZXN7 31693208
    128602 6k5z:A (2.33) BS03 FE ? GO:0000166 ... Q8ZXN7 31693208
    128603 6k5z:B (2.33) BS01 ZN ? GO:0000166 ... Q8ZXN7 31693208
    128604 6k5z:B (2.33) BS02 ZN ? GO:0000166 ... Q8ZXN7 31693208
    128605 6k5z:B (2.33) BS03 FE ? GO:0000166 ... Q8ZXN7 31693208
    128606 6k63:A (2.073) BS01 ZN 3.5.4.5 GO:0003824 ... A6TBN1 31495495
    128607 6k63:B (2.073) BS01 ZN 3.5.4.5 GO:0003824 ... A6TBN1 31495495
    128608 6k63:C (2.073) BS01 ZN 3.5.4.5 GO:0003824 ... A6TBN1 31495495
    128609 6k63:D (2.073) BS01 ZN 3.5.4.5 GO:0003824 ... A6TBN1 31495495
    128610 6k67:B (1.95) BS01 CA ? GO:0005509 ... P0DP25 31371498
    128611 6k67:B (1.95) BS02 CA ? GO:0005509 ... P0DP25 31371498
    128612 6k67:D (1.95) BS01 CA ? GO:0005509 ... P0DP25 31371498
    128613 6k67:D (1.95) BS02 CA ? GO:0005509 ... P0DP25 31371498
    128614 6k6s:A (2.993) BS01 MN 3.1.-.- GO:0003723 ... Q8CT16 N/A
    128615 6k6s:A (2.993) BS02 MN 3.1.-.- GO:0003723 ... Q8CT16 N/A
    128616 6k6s:B (2.993) BS01 MN 3.1.-.- GO:0003723 ... Q8CT16 N/A
    128617 6k6s:B (2.993) BS02 MN 3.1.-.- GO:0003723 ... Q8CT16 N/A
    128618 6k6t:A (2.2) BS02 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    128619 6k6t:A (2.2) BS03 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    128620 6k6t:B (2.2) BS02 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    128621 6k6t:B (2.2) BS03 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    128622 6k6t:C (2.2) BS02 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    128623 6k6t:C (2.2) BS03 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    128624 6k6t:D (2.2) BS02 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    128625 6k6t:D (2.2) BS03 CA 3.1.4.1 GO:0000166 ... A0A0H3AJ04 N/A
    128626 6k6w:A (2.7) BS01 MN 3.1.-.- GO:0003723 ... Q8CST0 N/A
    128627 6k6w:B (2.7) BS01 MN 3.1.-.- GO:0003723 ... Q8CST0 N/A
    128628 6k6w:C (2.7) BS01 MN 3.1.-.- GO:0003723 ... Q8CST0 N/A
    128629 6k6w:D (2.7) BS01 MN 3.1.-.- GO:0003723 ... Q8CST0 N/A
    128630 6k7j:A (3.08) BS02 MG 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    128631 6k7k:A (3.04) BS03 MG 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    128632 6k7l:A (2.83) BS02 MG 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    128633 6k7m:A (2.95) BS02 MG 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    128634 6k7n:A (2.84) BS03 MG 7.6.2.1 GO:0000166 ... Q9Y2Q0 31416931
    128635 6k82:B (1.402) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128636 6k83:A (2.39) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128637 6k83:A (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128638 6k83:A (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128639 6k83:A (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128640 6k83:B (2.39) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128641 6k83:B (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128642 6k83:B (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128643 6k83:B (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128644 6k83:C (2.39) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128645 6k83:C (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128646 6k83:C (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128647 6k83:C (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128648 6k83:D (2.39) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128649 6k83:D (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128650 6k83:D (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128651 6k83:D (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128652 6k83:E (2.39) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128653 6k83:E (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128654 6k83:E (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128655 6k83:E (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128656 6k83:F (2.39) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128657 6k83:F (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128658 6k83:F (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128659 6k83:F (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128660 6k83:G (2.39) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128661 6k83:G (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128662 6k83:G (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128663 6k83:G (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128664 6k83:H (2.39) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128665 6k83:H (2.39) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128666 6k83:H (2.39) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128667 6k83:H (2.39) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128668 6k85:B (1.606) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128669 6k85:B (1.606) BS02 MG 2.3.2.27 N/A Q9SS90 N/A
    128670 6k86:B (1.593) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128671 6k88:A (1.788) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    128672 6k88:A (1.788) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128673 6k88:A (1.788) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128674 6k88:A (1.788) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128675 6k88:B (1.788) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    128676 6k88:B (1.788) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128677 6k88:B (1.788) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128678 6k88:B (1.788) BS04 CA 2.3.2.27 N/A Q9SS90 N/A
    128679 6k89:B (1.689) BS01 MG 2.3.2.27 N/A Q9SS90 N/A
    128680 6k8a:A (2.4) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    128681 6k8a:A (2.4) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128682 6k8a:A (2.4) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128683 6k8a:B (2.4) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    128684 6k8a:B (2.4) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128685 6k8a:B (2.4) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128686 6k8b:A (2.21) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    128687 6k8b:A (2.21) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128688 6k8b:A (2.21) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128689 6k8b:A (2.21) BS04 MG 2.3.2.27 N/A Q9SS90 N/A
    128690 6k8b:B (2.21) BS01 CA 2.3.2.27 N/A Q9SS90 N/A
    128691 6k8b:B (2.21) BS02 CA 2.3.2.27 N/A Q9SS90 N/A
    128692 6k8b:B (2.21) BS03 CA 2.3.2.27 N/A Q9SS90 N/A
    128693 6k8b:B (2.21) BS04 MG 2.3.2.27 N/A Q9SS90 N/A
    128694 6k8k:A (2.5) BS03 MG ? GO:0000325 ... Q96524 32398826
    128695 6k8k:D (2.5) BS03 MG ? GO:0000325 ... Q96524 32398826
    128696 6k8k:G (2.5) BS03 MG ? GO:0000325 ... Q96524 32398826
    128697 6k8n:A (2.1) BS01 ZN 5.6.2.1 GO:0003677 ... Q97ZJ8 N/A
    128698 6k8n:B (2.1) BS01 ZN 5.6.2.1 GO:0003677 ... Q97ZJ8 N/A
    128699 6k8n:C (2.1) BS01 ZN 5.6.2.1 GO:0003677 ... Q97ZJ8 N/A
    128700 6k8n:D (2.1) BS01 ZN 5.6.2.1 GO:0003677 ... Q97ZJ8 N/A
    128701 6k8o:A (2.5) BS02 ZN 5.6.2.1 GO:0003677 ... Q97ZJ8 N/A
    128702 6k8z:B (1.9) BS02 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128703 6k8z:B (1.9) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128704 6k90:A (1.9) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128705 6k90:A (1.9) BS04 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128706 6k90:B (1.9) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128707 6k91:A (2.0) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128708 6k91:A (2.0) BS04 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128709 6k91:B (2.0) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128710 6k92:A (1.85) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128711 6k92:B (1.85) BS03 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128712 6k92:B (1.85) BS04 CA 2.7.1.35 GO:0000166 ... A0A3S7X3C0 32105687
    128713 6k9a:A (2.3) BS01 CA 2.7.7.-
    2.7.7.7
    3.6.4.12
    N/A M5AAG8 N/A
    128714 6k9a:A (2.3) BS02 CA 2.7.7.-
    2.7.7.7
    3.6.4.12
    N/A M5AAG8 N/A
    128715 6k9u:A (2.35) BS01 ZN 3.1.4.17 GO:0004114 ... Q9QYJ6 31235264
    128716 6k9u:A (2.35) BS02 MG 3.1.4.17 GO:0004114 ... Q9QYJ6 31235264
    128717 6k9v:A (2.543) BS02 MG 3.6.5.- GO:0000226 ... P81947 31369682
    128718 6k9v:C (2.543) BS02 CA 3.6.5.- GO:0000226 ... P81947 31369682
    128719 6k9z:A (1.78) BS01 ZN ? GO:0000166 ... Q8ZXN7 31693208
    128720 6k9z:A (1.78) BS02 ZN ? GO:0000166 ... Q8ZXN7 31693208
    128721 6k9z:A (1.78) BS03 FE ? GO:0000166 ... Q8ZXN7 31693208
    128722 6k9z:B (1.78) BS02 ZN ? GO:0000166 ... Q8ZXN7 31693208
    128723 6k9z:B (1.78) BS03 ZN ? GO:0000166 ... Q8ZXN7 31693208
    128724 6k9z:B (1.78) BS04 FE ? GO:0000166 ... Q8ZXN7 31693208
    128725 6kac:A (2.7) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 31768031
    128726 6kac:D (2.7) BS03 FE2 1.10.3.9 GO:0005506 ... P06007 31768031
    128727 6kac:a (2.7) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 31768031
    128728 6kac:d (2.7) BS03 FE2 1.10.3.9 GO:0005506 ... P06007 31768031
    128729 6kad:A (3.4) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 31768031
    128730 6kad:D (3.4) BS01 FE2 1.10.3.9 GO:0005506 ... P06007 31768031
    128731 6kad:a (3.4) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 31768031
    128732 6kad:d (3.4) BS01 FE2 1.10.3.9 GO:0005506 ... P06007 31768031
    128733 6kaf:A (3.73) BS01 FE2 1.10.3.9 GO:0005506 ... P07753 31570614
    128734 6kaf:a (3.73) BS01 FE2 1.10.3.9 GO:0005506 ... P07753 31570614
    128735 6kaj:A (2.2249) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128736 6kaj:B (2.2249) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128737 6kaj:C (2.2249) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128738 6kaj:D (2.2249) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128739 6kak:A (2.056) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128740 6kak:A (2.056) BS02 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128741 6kak:B (2.056) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128742 6kak:C (2.056) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128743 6kak:D (2.056) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128744 6kal:A (2.6) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128745 6kal:A (2.6) BS03 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128746 6kal:A (2.6) BS04 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128747 6kal:B (2.6) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128748 6kal:B (2.6) BS03 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128749 6kal:B (2.6) BS04 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128750 6kal:C (2.6) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128751 6kal:C (2.6) BS03 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128752 6kal:C (2.6) BS04 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128753 6kal:D (2.6) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128754 6kal:D (2.6) BS03 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128755 6kal:D (2.6) BS04 MG 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128756 6kam:A (2.46) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128757 6kam:B (2.46) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128758 6kam:C (2.46) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128759 6kam:D (2.46) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128760 6kan:A (2.251) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128761 6kan:B (2.251) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128762 6kan:C (2.251) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128763 6kan:D (2.251) BS01 ZN 2.7.8.- GO:0000139 ... Q9H9S5 31949166
    128764 6kbd:A (3.0) BS03 MG 2.7.7.-
    3.1.-.-
    N/A B6YWB8
    P71629
    33352158
    128765 6kbd:A (3.0) BS04 MG 2.7.7.-
    3.1.-.-
    N/A B6YWB8
    P71629
    33352158
    128766 6kbj:A (2.2) BS01 CA ? N/A E7E2M2 32112837
    128767 6kbj:A (2.2) BS02 CA ? N/A E7E2M2 32112837
    128768 6kbq:A (2.299) BS01 CA ? N/A E7E2M2 32112837
    128769 6kbq:A (2.299) BS02 CA ? N/A E7E2M2 32112837
    128770 6kc0:A (2.295) BS03 MG 2.7.7.-
    3.1.-.-
    N/A B6YWB8
    P71629
    33352158
    128771 6kc0:A (2.295) BS04 MG 2.7.7.-
    3.1.-.-
    N/A B6YWB8
    P71629
    33352158
    128772 6kc2:A (2.246) BS01 CA ? N/A E7E2M2 32112837
    128773 6kc2:A (2.246) BS02 CA ? N/A E7E2M2 32112837
    128774 6kc5:B (1.543) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128775 6kc5:B (1.543) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128776 6kc5:B (1.543) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128777 6kc5:B (1.543) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128778 6kc6:A (2.123) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128779 6kc6:A (2.123) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128780 6kc6:A (2.123) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128781 6kc6:A (2.123) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128782 6kc6:C (2.123) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128783 6kc6:C (2.123) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128784 6kc6:C (2.123) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128785 6kc6:C (2.123) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128786 6kc6:E (2.123) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128787 6kc6:E (2.123) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128788 6kc6:E (2.123) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128789 6kc6:E (2.123) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128790 6kc6:G (2.123) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128791 6kc6:G (2.123) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128792 6kc6:G (2.123) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128793 6kc6:G (2.123) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128794 6kc6:I (2.123) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128795 6kc6:I (2.123) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128796 6kc6:I (2.123) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128797 6kc6:I (2.123) BS04 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128798 6kc6:K (2.123) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128799 6kc6:K (2.123) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052
    128800 6kc6:K (2.123) BS03 ZN 2.3.2.31 GO:0004842 ... Q96EP0 32246052

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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