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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    128001 6jlu:A (3.02) BS02 FE2 N/A GO:0009055 ... N/A 31371578
    128002 6jlu:D (3.02) BS01 FE2 N/A GO:0009523 ... N/A 31371578
    128003 6jlu:a (3.02) BS02 FE2 N/A GO:0009055 ... N/A 31371578
    128004 6jlu:d (3.02) BS01 FE2 N/A GO:0009523 ... N/A 31371578
    128005 6jmg:A (2.701) BS02 MG ? GO:0003924 ... Q7ZYF1 N/A
    128006 6jmg:B (2.701) BS02 MG ? GO:0003924 ... Q7ZYF1 N/A
    128007 6jmt:A (2.8) BS02 ZN ? GO:0005096 ... Q9JLQ2 32780989
    128008 6jmt:B (2.8) BS02 ZN ? GO:0005096 ... Q9JLQ2 32780989
    128009 6jmt:C (2.8) BS02 ZN ? GO:0005096 ... Q9JLQ2 32780989
    128010 6jmt:D (2.8) BS02 ZN ? GO:0005096 ... Q9JLQ2 32780989
    128011 6jmt:E (2.8) BS02 ZN ? GO:0005096 ... Q9JLQ2 32780989
    128012 6jmt:F (2.8) BS02 ZN ? GO:0005096 ... Q9JLQ2 32780989
    128013 6jmv:A (1.832) BS02 ZN ? GO:0015276 ... P42264 31311973
    128014 6jmv:A (1.832) BS03 ZN ? GO:0015276 ... P42264 31311973
    128015 6jmv:B (1.832) BS01 ZN ? GO:0015276 ... P42264 31311973
    128016 6jmx:A (1.859) BS01 ZN N/A N/A N/A 31974386
    128017 6jmy:A (1.661) BS01 ZN N/A N/A N/A 31974386
    128018 6jmz:A (1.92) BS01 ZN N/A N/A N/A 31974386
    128019 6jn0:A (2.164) BS02 ZN N/A N/A N/A 31974386
    128020 6jn1:A (2.382) BS02 ZN N/A N/A N/A 31974386
    128021 6jn6:A (1.602) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31269398
    128022 6jn6:A (1.602) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31269398
    128023 6jn6:B (1.602) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31269398
    128024 6jn6:B (1.602) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31269398
    128025 6jn7:A (2.04) BS01 ZN N/A N/A N/A 31974386
    128026 6jn7:B (2.04) BS01 ZN N/A N/A N/A 31974386
    128027 6jn7:C (2.04) BS01 ZN N/A N/A N/A 31974386
    128028 6jn8:A (2.106) BS01 ZN N/A N/A N/A 31974386
    128029 6jni:A (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    128030 6jni:A (2.9) BS05 ZN ? GO:0003677 ... Q93TP7 31548408
    128031 6jni:B (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    128032 6jni:C (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    128033 6jni:D (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    128034 6jni:D (2.9) BS05 ZN ? GO:0003677 ... Q93TP7 31548408
    128035 6jni:E (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    128036 6jni:E (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    128037 6jni:F (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    128038 6jni:G (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    128039 6jni:G (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    128040 6jni:H (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    128041 6jni:H (2.9) BS05 ZN ? GO:0003677 ... Q93TP7 31548408
    128042 6jnl:A (2.15) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    128043 6jnl:A (2.15) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    128044 6jnl:A (2.15) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    128045 6jnl:A (2.15) BS06 MG 1.14.11.- N/A Q9STM3 31048693
    128046 6jnm:A (2.05) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    128047 6jnm:A (2.05) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    128048 6jnm:A (2.05) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    128049 6jnm:B (2.05) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    128050 6jnm:B (2.05) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    128051 6jnm:B (2.05) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    128052 6jnn:A (2.6) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    128053 6jnn:A (2.6) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    128054 6jnn:A (2.6) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    128055 6jnn:B (2.6) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    128056 6jnn:B (2.6) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    128057 6jnn:B (2.6) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    128058 6jnn:G (2.6) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    128059 6jnn:G (2.6) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    128060 6jnn:N (2.6) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    128061 6jnn:N (2.6) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    128062 6jnx:D (4.08) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    128063 6jnx:D (4.08) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    128064 6jnx:D (4.08) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    128065 6jon:A (2.34) BS02 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 31176489
    128066 6jon:A (2.34) BS03 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 31176489
    128067 6joo:A (2.9) BS04 ZN 3.1.-.- GO:0003676 ... Q6NKI3 31036811
    128068 6jop:A (2.353) BS02 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 31176489
    128069 6jop:A (2.353) BS03 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 31176489
    128070 6joq:A (2.4) BS02 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 31176489
    128071 6joq:A (2.4) BS03 MG 2.7.7.-
    2.7.7.7
    3.6.4.12    		 N/A M5AAG8 31176489
    128072 6jov:A (1.941) BS01 FE N/A GO:0004784 ... N/A N/A
    128073 6jov:B (1.941) BS01 FE N/A GO:0004784 ... N/A N/A
    128074 6jov:C (1.941) BS01 FE N/A GO:0004784 ... N/A N/A
    128075 6jov:D (1.941) BS01 FE N/A GO:0004784 ... N/A N/A
    128076 6jp4:A (2.069) BS01 MN 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128077 6jp4:A (2.069) BS02 MG 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128078 6jp4:A (2.069) BS03 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128079 6jp4:A (2.069) BS04 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128080 6jp4:B (2.069) BS01 MN 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128081 6jp4:B (2.069) BS02 MG 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128082 6jp4:B (2.069) BS03 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128083 6jp4:B (2.069) BS04 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128084 6jp4:C (2.069) BS01 MN 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128085 6jp4:C (2.069) BS02 MG 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128086 6jp4:C (2.069) BS03 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128087 6jp4:C (2.069) BS04 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128088 6jp5:A (2.9) BS01 CA ? GO:0005216 ... P07293 31150622
    128089 6jp5:F (2.9) BS01 CA ? N/A P13806 31150622
    128090 6jp8:A (2.7) BS02 CA ? GO:0005216 ... P07293 31150622
    128091 6jp8:A (2.7) BS03 CA ? GO:0005216 ... P07293 31150622
    128092 6jpa:A (2.6) BS01 CA ? GO:0005216 ... P07293 31150622
    128093 6jpa:A (2.6) BS02 CA ? GO:0005216 ... P07293 31150622
    128094 6jpa:F (2.6) BS01 CA ? GO:0005245 ... P13806 31150622
    128095 6jpb:A (2.9) BS01 CA ? GO:0005216 ... P07293 31150622
    128096 6jpb:A (2.9) BS02 CA ? GO:0005216 ... P07293 31150622
    128097 6jpb:F (2.9) BS01 CA ? GO:0005245 ... P13806 31150622
    128098 6jph:A (2.759) BS04 MN 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128099 6jph:A (2.759) BS05 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128100 6jph:A (2.759) BS06 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128101 6jph:A (2.759) BS07 MG 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128102 6jpn:A (2.85) BS06 MN 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128103 6jpn:A (2.85) BS07 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128104 6jpn:A (2.85) BS08 CA 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128105 6jpn:A (2.85) BS09 MG 4.2.2.3 GO:0016829 ... A0A4Y5UXE1 31624143
    128106 6jq9:A (1.81) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 31751708
    128107 6jq9:A (1.81) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 31751708
    128108 6jq9:B (1.81) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 31751708
    128109 6jq9:B (1.81) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 31751708
    128110 6jqb:A (1.101) BS01 CA 3.2.1.60 GO:0004556 ... P22963 31751711
    128111 6jqb:A (1.101) BS02 CA 3.2.1.60 GO:0004556 ... P22963 31751711
    128112 6jqc:A (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... Q4WPJ0 31376470
    128113 6jqc:B (1.8) BS01 ZN 4.2.1.1 GO:0004089 ... Q4WPJ0 31376470
    128114 6jqd:A (1.69) BS01 ZN 4.2.1.1 GO:0004089 ... Q4WPJ0 31376470
    128115 6jqd:B (1.69) BS01 ZN 4.2.1.1 GO:0004089 ... Q4WPJ0 31376470
    128116 6jqe:A (1.9) BS01 ZN 4.2.1.1 GO:0004089 ... A4DA31 31376470
    128117 6jqe:B (1.9) BS01 ZN 4.2.1.1 GO:0004089 ... A4DA31 31376470
    128118 6jqw:A (1.437) BS01 ZN 4.1.1.91 GO:0005737 ... P0CT50 34553918
    128119 6jqw:B (1.437) BS01 ZN 4.1.1.91 GO:0005737 ... P0CT50 34553918
    128120 6jqx:A (1.672) BS02 ZN 4.1.1.91 GO:0005737 ... P0CT50 34553918
    128121 6jqx:B (1.672) BS02 ZN 4.1.1.91 GO:0005737 ... P0CT50 34553918
    128122 6jre:B (2.59) BS01 CO ? N/A A0A0J9VJU0 32038044
    128123 6jre:B (2.59) BS02 CO ? N/A A0A0J9VJU0 32038044
    128124 6jrf:A (2.047) BS03 CA ? GO:0008821 ... B4FCI7 31611704
    128125 6jrf:A (2.047) BS04 CA ? GO:0008821 ... B4FCI7 31611704
    128126 6jrf:B (2.047) BS03 CA ? GO:0008821 ... B4FCI7 31611704
    128127 6jrf:B (2.047) BS04 CA ? GO:0008821 ... B4FCI7 31611704
    128128 6jrg:A (2.005) BS03 MG ? GO:0008821 ... B4FCI7 31611704
    128129 6jrg:B (2.005) BS03 MG ? GO:0008821 ... B4FCI7 31611704
    128130 6jrr:A (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    128131 6jrr:A (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    128132 6jrr:C (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    128133 6jrr:C (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    128134 6jrr:E (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    128135 6jrr:E (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    128136 6jrr:G (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    128137 6jrr:G (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    128138 6jrs:A (3.7) BS01 ZN N/A GO:0005216 ... N/A 31278385
    128139 6jrs:A (3.7) BS02 CA N/A GO:0005216 ... N/A 31278385
    128140 6jrs:D (3.7) BS01 ZN N/A GO:0005216 ... N/A 31278385
    128141 6jrs:D (3.7) BS02 CA N/A GO:0005216 ... N/A 31278385
    128142 6jrs:G (3.7) BS01 ZN N/A GO:0005216 ... N/A 31278385
    128143 6jrs:G (3.7) BS02 CA N/A GO:0005216 ... N/A 31278385
    128144 6jrs:J (3.7) BS01 ZN N/A GO:0005216 ... N/A 31278385
    128145 6jrs:J (3.7) BS02 CA N/A GO:0005216 ... N/A 31278385
    128146 6jss:A (2.16) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128147 6jss:A (2.16) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128148 6jss:B (2.16) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128149 6jss:B (2.16) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128150 6jss:C (2.16) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128151 6jss:C (2.16) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128152 6jss:D (2.16) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128153 6jss:D (2.16) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128154 6jst:A (1.726) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128155 6jst:A (1.726) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128156 6jst:B (1.726) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128157 6jst:B (1.726) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128158 6jst:C (1.726) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128159 6jst:C (1.726) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128160 6jst:D (1.726) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128161 6jst:D (1.726) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128162 6jsu:A (1.8) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128163 6jsu:A (1.8) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128164 6jsu:B (1.8) BS01 FE 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128165 6jsu:B (1.8) BS02 ZN 3.5.-.- GO:0008270 ... Q5KZU5 32320671
    128166 6jt2:A (3.8) BS02 MG 4.6.1.2 GO:0004383 ... Q02108 31514202
    128167 6jt2:A (3.8) BS03 MG 4.6.1.2 GO:0004383 ... Q02108 31514202
    128168 6jt5:A (1.5) BS01 CA ? N/A A8P0V4 31604769
    128169 6jt7:A (1.86) BS02 MG 6.3.5.3 GO:0004642 ... P74881 32284973
    128170 6jt8:A (1.9) BS02 MG 6.3.5.3 GO:0004642 ... P74881 32284973
    128171 6jt9:A (2.1) BS01 MG 6.3.5.3 GO:0004642 ... P74881 32284973
    128172 6jta:A (1.75) BS03 MG 6.3.5.3 GO:0004642 ... P74881 32284973
    128173 6jtf:A (-1.00) BS01 ZN ? N/A X2D812 N/A
    128174 6jtg:A (2.4) BS02 MG 3.6.5.5 GO:0003924 ... O60313 32379273
    128175 6jtt:A (2.51) BS02 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    128176 6jtt:B (2.51) BS02 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    128177 6jtt:C (2.51) BS02 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    128178 6jtu:A (2.1) BS01 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    128179 6jtu:B (2.1) BS01 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    128180 6jtu:C (2.1) BS01 CA 3.1.1.102 N/A A0A0K8P8E7 N/A
    128181 6jtz:A (2.797) BS01 ZN 5.6.2.4 GO:0004386 ... P46063 34751402
    128182 6jtz:B (2.797) BS01 ZN 5.6.2.4 GO:0004386 ... P46063 34751402
    128183 6ju4:A (1.35) BS01 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128184 6ju4:A (1.35) BS02 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128185 6ju4:B (1.35) BS01 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128186 6ju4:B (1.35) BS02 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128187 6ju5:A (1.34) BS01 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128188 6ju5:A (1.34) BS02 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128189 6ju5:B (1.34) BS01 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128190 6ju5:B (1.34) BS02 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128191 6ju8:A (1.27) BS01 CU 1.14.18.1 GO:0016491 ... A0A1S9DK56 32356371
    128192 6ju8:A (1.27) BS02 CU 1.14.18.1 GO:0016491 ... A0A1S9DK56 32356371
    128193 6ju8:B (1.27) BS01 CU 1.14.18.1 GO:0016491 ... A0A1S9DK56 32356371
    128194 6ju8:B (1.27) BS02 CU 1.14.18.1 GO:0016491 ... A0A1S9DK56 32356371
    128195 6ju9:A (1.42) BS03 CU 1.14.18.1 GO:0016491 ... A0A1S9DK56 32356371
    128196 6ju9:A (1.42) BS04 CU 1.14.18.1 GO:0016491 ... A0A1S9DK56 32356371
    128197 6ju9:B (1.42) BS02 CU 1.14.18.1 GO:0016491 ... A0A1S9DK56 32356371
    128198 6ju9:B (1.42) BS03 CU 1.14.18.1 GO:0016491 ... A0A1S9DK56 32356371
    128199 6jua:A (1.45) BS01 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    128200 6jua:A (1.45) BS02 CU 1.14.18.1 GO:0004503 ... A0A1S9DK56 32356371
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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