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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    127801 6jiu:L (4.2) BS01 CA ? GO:0000086 ... P0DP23 31278385
    127802 6jiy:A (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127803 6jiy:A (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    127804 6jiy:C (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    127805 6jiy:C (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    127806 6jiy:C (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    127807 6jiy:D (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127808 6jiy:D (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    127809 6jiy:F (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    127810 6jiy:F (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    127811 6jiy:F (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    127812 6jiy:G (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127813 6jiy:G (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    127814 6jiy:I (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    127815 6jiy:I (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    127816 6jiy:I (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    127817 6jiy:J (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127818 6jiy:J (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    127819 6jiy:L (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    127820 6jiy:L (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    127821 6jiy:L (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    127822 6jja:A (2.91) BS01 CA ? GO:0019013 ... Q15BP7 N/A
    127823 6jjc:A (2.92) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    127824 6jjc:A (2.92) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    127825 6jjc:A (2.92) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    127826 6jjc:A (2.92) BS04 CA ? GO:0044423 ... Q15BP6 N/A
    127827 6jjc:B (2.92) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    127828 6jjc:B (2.92) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    127829 6jjc:B (2.92) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    127830 6jjc:B (2.92) BS04 CA ? GO:0044423 ... Q15BP6 N/A
    127831 6jjc:B (2.92) BS05 CA ? GO:0044423 ... Q15BP6 N/A
    127832 6jjc:C (2.92) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    127833 6jjc:C (2.92) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    127834 6jjc:C (2.92) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    127835 6jjd:A (3.21) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    127836 6jjd:A (3.21) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    127837 6jjd:A (3.21) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    127838 6jjd:B (3.21) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    127839 6jjd:B (3.21) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    127840 6jjd:B (3.21) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    127841 6jjd:B (3.21) BS04 CA ? GO:0044423 ... Q15BP6 N/A
    127842 6jjd:C (3.21) BS01 CA ? GO:0044423 ... Q15BP6 N/A
    127843 6jjd:C (3.21) BS02 CA ? GO:0044423 ... Q15BP6 N/A
    127844 6jjd:C (3.21) BS03 CA ? GO:0044423 ... Q15BP6 N/A
    127845 6jjj:A (2.792) BS01 CA ? N/A P70194 31369681
    127846 6jjj:A (2.792) BS02 CA ? N/A P70194 31369681
    127847 6jjj:B (2.792) BS01 CA ? N/A P70194 31369681
    127848 6jjj:B (2.792) BS02 CA ? N/A P70194 31369681
    127849 6jjj:C (2.792) BS01 CA ? N/A P70194 31369681
    127850 6jjj:C (2.792) BS02 CA ? N/A P70194 31369681
    127851 6jjj:D (2.792) BS01 CA ? N/A P70194 31369681
    127852 6jjj:D (2.792) BS02 CA ? N/A P70194 31369681
    127853 6jjj:E (2.792) BS01 CA ? N/A P70194 31369681
    127854 6jjj:E (2.792) BS02 CA ? N/A P70194 31369681
    127855 6jjj:F (2.792) BS01 CA ? N/A P70194 31369681
    127856 6jjj:F (2.792) BS02 CA ? N/A P70194 31369681
    127857 6jju:A (3.2) BS02 MG 7.2.2.10 GO:0000045 ... P16615 31018135
    127858 6jju:A (3.2) BS03 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    127859 6jju:A (3.2) BS04 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    127860 6jk4:A (1.06) BS01 CA ? GO:0038023 ... P84493 31035615
    127861 6jka:A (2.006) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34853284
    127862 6jka:A (2.006) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34853284
    127863 6jka:B (2.006) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34853284
    127864 6jka:B (2.006) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34853284
    127865 6jka:C (2.006) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34853284
    127866 6jka:C (2.006) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34853284
    127867 6jka:D (2.006) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 34853284
    127868 6jka:D (2.006) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 34853284
    127869 6jkb:A (2.444) BS01 ZN 3.5.2.6 N/A C7C422 34853284
    127870 6jkb:A (2.444) BS02 ZN 3.5.2.6 N/A C7C422 34853284
    127871 6jkb:B (2.444) BS01 ZN 3.5.2.6 N/A C7C422 34853284
    127872 6jkb:B (2.444) BS02 ZN 3.5.2.6 N/A C7C422 34853284
    127873 6jki:A (2.59) BS03 MN 2.1.1.228 GO:0002939 ... Q9HXQ1 31399541
    127874 6jki:B (2.59) BS03 MN 2.1.1.228 GO:0002939 ... Q9HXQ1 31399541
    127875 6jkm:A (1.95) BS02 MG ? GO:0004672 ... A1Z6I7 31201382
    127876 6jko:A (1.9) BS01 ZN ? GO:0000166 ... A0A0A7I0A5 31123167
    127877 6jko:B (1.9) BS01 ZN ? GO:0000166 ... A0A0A7I0A5 31123167
    127878 6jko:C (1.9) BS01 ZN ? GO:0000166 ... A0A0A7I0A5 31123167
    127879 6jko:D (1.9) BS01 ZN ? GO:0000166 ... A0A0A7I0A5 31123167
    127880 6jkp:C (3.008) BS02 ZN ? GO:0000166 ... A0A0A7I0A5 31123167
    127881 6jku:A (1.95) BS01 ZN 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    127882 6jku:B (1.95) BS01 ZN 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    127883 6jku:C (1.95) BS01 ZN 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    127884 6jku:D (1.95) BS01 ZN 3.5.1.25 GO:0006040 ... Q9CMF5 32865821
    127885 6jkv:A (2.1) BS01 MN 3.1.3.16 GO:0004722 ... Q9I757 31208722
    127886 6jkv:A (2.1) BS02 MN 3.1.3.16 GO:0004722 ... Q9I757 31208722
    127887 6jkv:B (2.1) BS01 MN 3.1.3.16 GO:0004722 ... Q9I757 31208722
    127888 6jkv:B (2.1) BS02 MN 3.1.3.16 GO:0004722 ... Q9I757 31208722
    127889 6jkw:A (2.29) BS01 ZN N/A N/A N/A 29842976
    127890 6jkw:A (2.29) BS02 ZN N/A N/A N/A 29842976
    127891 6jkw:B (2.29) BS01 ZN N/A N/A N/A 29842976
    127892 6jkw:B (2.29) BS02 ZN N/A N/A N/A 29842976
    127893 6jkw:C (2.29) BS01 ZN N/A N/A N/A 29842976
    127894 6jkw:C (2.29) BS02 ZN N/A N/A N/A 29842976
    127895 6jkw:D (2.29) BS01 ZN N/A N/A N/A 29842976
    127896 6jkw:D (2.29) BS02 ZN N/A N/A N/A 29842976
    127897 6jkw:E (2.29) BS01 ZN N/A N/A N/A 29842976
    127898 6jkw:E (2.29) BS02 ZN N/A N/A N/A 29842976
    127899 6jkw:F (2.29) BS01 ZN N/A N/A N/A 29842976
    127900 6jkw:F (2.29) BS02 ZN N/A N/A N/A 29842976
    127901 6jkw:G (2.29) BS01 ZN N/A N/A N/A 29842976
    127902 6jkw:G (2.29) BS02 ZN N/A N/A N/A 29842976
    127903 6jkw:H (2.29) BS01 ZN N/A N/A N/A 29842976
    127904 6jkw:H (2.29) BS02 ZN N/A N/A N/A 29842976
    127905 6jl9:A (2.0) BS01 CA ? GO:0005509 ... F6VRB7 31316816
    127906 6jlf:A (2.548) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127907 6jlf:B (2.548) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127908 6jlf:C (2.548) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127909 6jlf:D (2.548) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127910 6jlf:E (2.548) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127911 6jlh:A (2.37) BS02 CA ? GO:0005509 ... Q5XJX1 32156735
    127912 6jlh:A (2.37) BS03 CA ? GO:0005509 ... Q5XJX1 32156735
    127913 6jlh:A (2.37) BS04 CA ? GO:0005509 ... Q5XJX1 32156735
    127914 6jlh:A (2.37) BS05 CA ? GO:0005509 ... Q5XJX1 32156735
    127915 6jlh:A (2.37) BS06 CA ? GO:0005509 ... Q5XJX1 32156735
    127916 6jlh:A (2.37) BS07 CA ? GO:0005509 ... Q5XJX1 32156735
    127917 6jlh:C (2.37) BS02 CA ? GO:0005509 ... Q5XJX1 32156735
    127918 6jlh:C (2.37) BS03 CA ? GO:0005509 ... Q5XJX1 32156735
    127919 6jlh:C (2.37) BS04 CA ? GO:0005509 ... Q5XJX1 32156735
    127920 6jlh:C (2.37) BS05 CA ? GO:0005509 ... Q5XJX1 32156735
    127921 6jlh:C (2.37) BS06 CA ? GO:0005509 ... Q5XJX1 32156735
    127922 6jlh:C (2.37) BS07 CA ? GO:0005509 ... Q5XJX1 32156735
    127923 6jlj:A (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127924 6jlj:C (2.15) BS15 CA ? GO:0005737 ... D0VWR7 31624207
    127925 6jlj:D (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127926 6jlj:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127927 6jlj:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127928 6jlj:a (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127929 6jlj:c (2.15) BS02 CA ? GO:0005737 ... D0VWR7 31624207
    127930 6jlj:c (2.15) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    127931 6jlj:d (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127932 6jlj:j (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127933 6jlj:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127934 6jlk:A (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127935 6jlk:C (2.15) BS15 CA ? GO:0005737 ... D0VWR7 31624207
    127936 6jlk:D (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127937 6jlk:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127938 6jlk:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127939 6jlk:a (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127940 6jlk:c (2.15) BS02 CA ? GO:0005737 ... D0VWR7 31624207
    127941 6jlk:c (2.15) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    127942 6jlk:d (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127943 6jlk:j (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127944 6jlk:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127945 6jll:A (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127946 6jll:C (2.15) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    127947 6jll:D (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127948 6jll:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127949 6jll:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127950 6jll:a (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127951 6jll:c (2.15) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    127952 6jll:c (2.15) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    127953 6jll:d (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127954 6jll:j (2.15) BS02 MG ? GO:0009523 ... Q7DGD4 31624207
    127955 6jll:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127956 6jlm:A (2.35) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127957 6jlm:C (2.35) BS15 CA ? GO:0005737 ... D0VWR7 31624207
    127958 6jlm:D (2.35) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127959 6jlm:J (2.35) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127960 6jlm:O (2.35) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127961 6jlm:a (2.35) BS07 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127962 6jlm:c (2.35) BS02 CA ? GO:0005737 ... D0VWR7 31624207
    127963 6jlm:c (2.35) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    127964 6jlm:d (2.35) BS04 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127965 6jlm:j (2.35) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127966 6jlm:o (2.35) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127967 6jln:A (2.4) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127968 6jln:C (2.4) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    127969 6jln:D (2.4) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127970 6jln:J (2.4) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127971 6jln:O (2.4) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127972 6jln:a (2.4) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127973 6jln:c (2.4) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    127974 6jln:c (2.4) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    127975 6jln:d (2.4) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127976 6jln:j (2.4) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127977 6jln:o (2.4) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127978 6jlo:A (2.4) BS10 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127979 6jlo:C (2.4) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    127980 6jlo:D (2.4) BS06 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127981 6jlo:J (2.4) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127982 6jlo:O (2.4) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127983 6jlo:a (2.4) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127984 6jlo:c (2.4) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    127985 6jlo:c (2.4) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    127986 6jlo:d (2.4) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127987 6jlo:j (2.4) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127988 6jlo:o (2.4) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127989 6jlp:A (2.5) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127990 6jlp:C (2.5) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    127991 6jlp:D (2.5) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127992 6jlp:J (2.5) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127993 6jlp:O (2.5) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    127994 6jlp:a (2.5) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    127995 6jlp:c (2.5) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    127996 6jlp:c (2.5) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    127997 6jlp:d (2.5) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    127998 6jlp:j (2.5) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    127999 6jlp:o (2.5) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    128000 6jlq:A (3.101) BS01 ZN 3.4.19.12 GO:0001662 ... P62068 31632687
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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