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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12601 1qia:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12602 1qia:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12603 1qia:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12604 1qia:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12605 1qia:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12606 1qia:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12607 1qia:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12608 1qia:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12609 1qia:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12610 1qia:C (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12611 1qia:C (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12612 1qia:C (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12613 1qia:C (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12614 1qia:C (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12615 1qia:D (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12616 1qia:D (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12617 1qia:D (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12618 1qia:D (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12619 1qia:D (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12620 1qib:A (2.8) BS01 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    12621 1qib:A (2.8) BS02 ZN 3.4.24.24 GO:0004222 ... P08253 N/A
    12622 1qib:A (2.8) BS03 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    12623 1qib:A (2.8) BS04 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    12624 1qib:A (2.8) BS05 CA 3.4.24.24 GO:0004222 ... P08253 N/A
    12625 1qic:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12626 1qic:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12627 1qic:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12628 1qic:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12629 1qic:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12630 1qic:B (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12631 1qic:B (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12632 1qic:B (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12633 1qic:B (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12634 1qic:B (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12635 1qic:C (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12636 1qic:C (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12637 1qic:C (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12638 1qic:C (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12639 1qic:C (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12640 1qic:D (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12641 1qic:D (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    12642 1qic:D (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12643 1qic:D (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12644 1qic:D (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    12645 1qin:A (2.0) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12646 1qin:B (2.0) BS02 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12647 1qip:A (1.72) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12648 1qip:A (1.72) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12649 1qip:B (1.72) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12650 1qip:B (1.72) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12651 1qip:C (1.72) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12652 1qip:C (1.72) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12653 1qip:D (1.72) BS02 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12654 1qip:D (1.72) BS04 ZN 4.4.1.5 GO:0004462 ... Q04760 10521255
    12655 1qiq:A (1.5) BS02 FE 1.21.3.1 GO:0005506 ... P05326 10537113
    12656 1qiv:A (2.64) BS01 CA ? GO:0000922 ... P62157 10731425
    12657 1qiv:A (2.64) BS02 CA ? GO:0000922 ... P62157 10731425
    12658 1qiv:A (2.64) BS03 CA ? GO:0000922 ... P62157 10731425
    12659 1qiv:A (2.64) BS04 CA ? GO:0000922 ... P62157 10731425
    12660 1qiw:A (2.3) BS01 CA ? GO:0000922 ... P62157 10731425
    12661 1qiw:A (2.3) BS02 CA ? GO:0000922 ... P62157 10731425
    12662 1qiw:A (2.3) BS03 CA ? GO:0000922 ... P62157 10731425
    12663 1qiw:A (2.3) BS04 CA ? GO:0000922 ... P62157 10731425
    12664 1qiw:B (2.3) BS01 CA ? GO:0000922 ... P62157 10731425
    12665 1qiw:B (2.3) BS02 CA ? GO:0000922 ... P62157 10731425
    12666 1qiw:B (2.3) BS03 CA ? GO:0000922 ... P62157 10731425
    12667 1qiw:B (2.3) BS04 CA ? GO:0000922 ... P62157 10731425
    12668 1qix:B (1.9) BS02 CA 3.4.21.36 GO:0004252 ... P00772 9187653
    12669 1qje:A (1.35) BS03 FE2 1.21.3.1 GO:0005506 ... P05326 10537113
    12670 1qjf:A (1.4) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 10537113
    12671 1qji:A (2.14) BS01 ZN 3.4.24.21 GO:0004222 ... P07584 8756323
    12672 1qjj:A (1.86) BS02 ZN 3.4.24.21 GO:0004222 ... P07584 8756323
    12673 1qjm:A (3.4) BS01 SM 3.4.21.- GO:0001503 ... O77811 10531475
    12674 1qjm:A (3.4) BS02 SM 3.4.21.- GO:0001503 ... O77811 10531475
    12675 1ql6:A (2.4) BS02 MN 2.7.11.1
    2.7.11.19
    2.7.11.26
    GO:0004672 ... P00518 10545198
    12676 1ql7:A (2.1) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11921406
    12677 1ql8:A (3.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 11921406
    12678 1ql9:A (2.3) BS01 CA 3.4.21.4 GO:0004252 ... P00763 12527302
    12679 1qlb:A (2.33) BS03 CA 1.3.5.1 GO:0000104 ... P17412 10586875
    12680 1qlb:D (2.33) BS03 CA 1.3.5.1 GO:0000104 ... P17412 10586875
    12681 1qle:A (3.0) BS03 CU 7.1.1.9 GO:0004129 ... P98002 10559205
    12682 1qle:A (3.0) BS04 CA 7.1.1.9 GO:0004129 ... P98002 10559205
    12683 1qle:A (3.0) BS05 MN 7.1.1.9 GO:0004129 ... P98002 10559205
    12684 1qlg:A (2.2) BS01 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    12685 1qlg:A (2.2) BS02 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    12686 1qlg:A (2.2) BS03 CA 3.1.3.8 GO:0005576 ... O66037 10655618
    12687 1qlg:A (2.2) BS04 MG 3.1.3.8 GO:0005576 ... O66037 10655618
    12688 1qlg:A (2.2) BS05 MG 3.1.3.8 GO:0005576 ... O66037 10655618
    12689 1qlh:A (2.07) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 10529241
    12690 1qlh:A (2.07) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 10529241
    12691 1qli:A (-1.00) BS01 ZN ? N/A Q05158 9115265
    12692 1qli:A (-1.00) BS02 ZN ? N/A Q05158 9115265
    12693 1qlj:A (2.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 10529241
    12694 1qlj:A (2.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 10529241
    12695 1qlk:A (-1.00) BS01 CA ? GO:0001726 ... P04631 9485423
    12696 1qlk:A (-1.00) BS02 CA ? GO:0001726 ... P04631 9485423
    12697 1qlk:B (-1.00) BS01 CA ? GO:0001726 ... P04631 9485423
    12698 1qlk:B (-1.00) BS02 CA ? GO:0001726 ... P04631 9485423
    12699 1qls:A (2.3) BS02 CA ? GO:0005509 ... P31950 10673436
    12700 1qls:A (2.3) BS03 CA ? GO:0005509 ... P31950 10673436
    12701 1qm6:A (2.5) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12702 1qm6:A (2.5) BS02 ZN 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12703 1qm6:B (2.5) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12704 1qm6:B (2.5) BS02 ZN 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12705 1qmd:A (2.2) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12706 1qmd:A (2.2) BS02 ZN 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12707 1qmd:A (2.2) BS03 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12708 1qmd:A (2.2) BS04 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12709 1qmd:A (2.2) BS05 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12710 1qmd:B (2.2) BS01 ZN 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12711 1qmd:B (2.2) BS02 ZN 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12712 1qmd:B (2.2) BS03 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12713 1qmd:B (2.2) BS04 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12714 1qmd:B (2.2) BS05 CA 3.1.4.3 GO:0004629 ... Q0TV31 10610794
    12715 1qmg:A (1.6) BS02 MN 1.1.1.86 GO:0004455 ... Q01292 10739911
    12716 1qmg:B (1.6) BS02 MN 1.1.1.86 GO:0004455 ... Q01292 10739911
    12717 1qmg:C (1.6) BS02 MN 1.1.1.86 GO:0004455 ... Q01292 10739911
    12718 1qmg:D (1.6) BS02 MN 1.1.1.86 GO:0004455 ... Q01292 10739911
    12719 1qml:A (3.0) BS01 HG 4.2.1.24 GO:0004655 ... P05373 10739915
    12720 1qmo:E (3.5) BS01 CA ? GO:0030246 ... Q9ZTA9 10843844
    12721 1qmo:E (3.5) BS02 MN ? GO:0030246 ... Q9ZTA9 10843844
    12722 1qmo:F (3.5) BS01 CA ? GO:0030246 ... Q9ZTA9 10843844
    12723 1qmo:F (3.5) BS02 MN ? GO:0030246 ... Q9ZTA9 10843844
    12724 1qmo:G (3.5) BS01 CA ? GO:0030246 ... Q9ZTA9 10843844
    12725 1qmo:G (3.5) BS02 MN ? GO:0030246 ... Q9ZTA9 10843844
    12726 1qmo:H (3.5) BS01 CA ? GO:0030246 ... Q9ZTA9 10843844
    12727 1qmo:H (3.5) BS02 MN ? GO:0030246 ... Q9ZTA9 10843844
    12728 1qmp:A (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    12729 1qmp:B (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    12730 1qmp:C (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    12731 1qmp:D (2.0) BS01 CA ? GO:0000160 ... P52934 10556024
    12732 1qmu:A (2.7) BS01 ZN 3.4.17.22 GO:0004180 ... P83852 10545093
    12733 1qmz:A (2.2) BS03 MG 2.7.11.22 GO:0000082 ... P24941 10559988
    12734 1qmz:C (2.2) BS03 MG 2.7.11.22 GO:0000082 ... P24941 10559988
    12735 1qni:A (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    12736 1qni:A (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    12737 1qni:B (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    12738 1qni:B (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    12739 1qni:C (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    12740 1qni:C (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    12741 1qni:D (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    12742 1qni:D (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    12743 1qni:E (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    12744 1qni:E (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    12745 1qni:F (2.4) BS02 CA ? GO:0004129 ... Q7SIA3 10700275
    12746 1qni:F (2.4) BS03 CA ? GO:0004129 ... Q7SIA3 10700275
    12747 1qnm:A (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537988
    12748 1qnm:B (2.3) BS01 MN 1.15.1.1 GO:0004784 ... P04179 9537988
    12749 1qnn:A (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    12750 1qnn:B (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    12751 1qnn:C (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    12752 1qnn:D (1.8) BS01 FE 1.15.1.1 GO:0004784 ... P19665 10848964
    12753 1qnv:A (2.5) BS01 PB 4.2.1.24 GO:0004655 ... P05373 10739915
    12754 1qnw:A (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    12755 1qnw:A (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    12756 1qnw:B (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    12757 1qnw:B (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    12758 1qnw:C (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    12759 1qnw:C (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    12760 1qnw:D (2.35) BS01 MN ? GO:0030246 ... P22973 10966800
    12761 1qnw:D (2.35) BS02 CA ? GO:0030246 ... P22973 10966800
    12762 1qny:A (1.8) BS01 MN ? GO:0030246 ... P02866 10771422
    12763 1qny:A (1.8) BS02 CA ? GO:0030246 ... P02866 10771422
    12764 1qo4:A (3.0) BS02 CA 1.11.1.7 GO:0002215 ... Q42578 11551197
    12765 1qo4:A (3.0) BS03 CA 1.11.1.7 GO:0002215 ... Q42578 11551197
    12766 1qoo:A (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    12767 1qoo:A (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    12768 1qoo:B (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    12769 1qoo:B (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    12770 1qoo:C (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    12771 1qoo:C (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    12772 1qoo:D (2.75) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    12773 1qoo:D (2.75) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    12774 1qop:B (1.4) BS02 NA 4.2.1.20 GO:0000162 ... P0A2K1 10600108
    12775 1qos:A (2.95) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    12776 1qos:A (2.95) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    12777 1qos:B (2.95) BS01 MN ? GO:0030246 ... Q9FVF8 10966800
    12778 1qos:B (2.95) BS02 CA ? GO:0030246 ... Q9FVF8 10966800
    12779 1qot:A (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    12780 1qot:A (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    12781 1qot:B (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    12782 1qot:B (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    12783 1qot:C (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    12784 1qot:C (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    12785 1qot:D (3.0) BS03 MN ? GO:0030246 ... Q9FVF8 10966800
    12786 1qot:D (3.0) BS04 CA ? GO:0030246 ... Q9FVF8 10966800
    12787 1qov:L (2.1) BS07 FE2 ? GO:0009772 ... P0C0Y8 10611277
    12788 1qov:M (2.1) BS06 FE2 ? GO:0009772 ... P0C0Y9 10611277
    12789 1qp9:A (2.8) BS03 ZN ? GO:0000981 ... P0CS82 11024163
    12790 1qp9:A (2.8) BS04 ZN ? GO:0000981 ... P0CS82 11024163
    12791 1qp9:B (2.8) BS03 ZN ? GO:0000981 ... P0CS82 11024163
    12792 1qp9:B (2.8) BS04 ZN ? GO:0000981 ... P0CS82 11024163
    12793 1qp9:B (2.8) BS05 ZN ? GO:0000981 ... P0CS82 11024163
    12794 1qp9:C (2.8) BS03 ZN ? GO:0000981 ... P0CS82 11024163
    12795 1qp9:C (2.8) BS04 ZN ? GO:0000981 ... P0CS82 11024163
    12796 1qp9:D (2.8) BS03 ZN ? GO:0000981 ... P0CS82 11024163
    12797 1qp9:D (2.8) BS04 ZN ? GO:0000981 ... P0CS82 11024163
    12798 1qp9:D (2.8) BS05 ZN ? GO:0000981 ... P0CS82 11024163
    12799 1qpa:A (1.8) BS03 CA 1.11.1.14 GO:0000302 ... P11542 10024453
    12800 1qpa:A (1.8) BS04 CA 1.11.1.14 GO:0000302 ... P11542 10024453

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218