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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    127601 6jcx:D (2.903) BS03 ZN 2.7.7.6 GO:0000287 ... P9WGY7 31131408
    127602 6jcx:D (2.903) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 31131408
    127603 6jcx:D (2.903) BS05 MG 2.7.7.6 GO:0000287 ... P9WGY7 31131408
    127604 6jcy:D (3.106) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 31131408
    127605 6jcy:D (3.106) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 31131408
    127606 6jcy:D (3.106) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 31131408
    127607 6jcz:A (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127608 6jcz:B (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127609 6jcz:C (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127610 6jcz:C (3.35) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127611 6jcz:D (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127612 6jcz:E (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127613 6jcz:F (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127614 6jcz:G (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127615 6jcz:H (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127616 6jcz:I (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127617 6jcz:J (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127618 6jcz:K (3.35) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127619 6jcz:L (3.35) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127620 6jd1:A (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127621 6jd1:B (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127622 6jd1:C (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127623 6jd1:D (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127624 6jd1:E (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127625 6jd1:F (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127626 6jd1:F (3.38) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127627 6jd1:G (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127628 6jd1:H (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127629 6jd1:I (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127630 6jd1:J (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127631 6jd1:K (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127632 6jd1:L (3.38) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127633 6jd2:A (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127634 6jd2:A (2.53) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127635 6jd2:B (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127636 6jd2:C (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127637 6jd2:D (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127638 6jd2:D (2.53) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127639 6jd2:E (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127640 6jd2:F (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127641 6jd2:G (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127642 6jd2:G (2.53) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127643 6jd2:H (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127644 6jd2:I (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127645 6jd2:I (2.53) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127646 6jd2:J (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127647 6jd2:J (2.53) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127648 6jd2:K (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127649 6jd2:L (2.53) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127650 6jd2:L (2.53) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127651 6jd9:A (1.58) BS01 CA 3.1.1.3 GO:0004806 ... A0A1Z1SX23 31297153
    127652 6jda:A (2.9) BS01 ZN 2.7.1.60 GO:0005524 ... Q9CKB3 N/A
    127653 6jdb:A (2.65) BS03 ZN 2.7.1.60 GO:0005524 ... Q4QP43 N/A
    127654 6jdc:A (2.271) BS01 ZN 2.7.1.60 GO:0005524 ... Q4QP43 N/A
    127655 6jde:A (2.8) BS01 ZN 3.6.4.12 GO:0003677 ... P33919 31035307
    127656 6jde:B (2.8) BS01 ZN 3.6.4.12 GO:0003677 ... P33919 31035307
    127657 6jdh:A (1.9) BS01 ZN N/A GO:0005524 ... N/A N/A
    127658 6jdh:B (1.9) BS01 ZN N/A GO:0005524 ... N/A N/A
    127659 6jdk:A (2.495) BS02 MG 1.14.13.- GO:0004497 ... A7HU16 30914200
    127660 6jdk:A (2.495) BS03 MG 1.14.13.- GO:0004497 ... A7HU16 30914200
    127661 6jdk:B (2.495) BS01 MG 1.14.13.- GO:0004497 ... A7HU16 30914200
    127662 6jdk:B (2.495) BS03 MG 1.14.13.- GO:0004497 ... A7HU16 30914200
    127663 6jdo:A (2.002) BS02 CA 2.7.1.60 GO:0005524 ... Q9CKB3 N/A
    127664 6jdo:B (2.002) BS01 CA 2.7.1.60 GO:0005524 ... Q9CKB3 N/A
    127665 6jdo:B (2.002) BS02 CA 2.7.1.60 GO:0005524 ... Q9CKB3 N/A
    127666 6jdr:A (2.5) BS01 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127667 6jdr:A (2.5) BS02 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127668 6jdr:A (2.5) BS03 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127669 6jdr:A (2.5) BS04 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127670 6jds:A (2.5) BS01 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127671 6jds:A (2.5) BS02 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127672 6jds:A (2.5) BS03 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127673 6jds:A (2.5) BS04 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127674 6jdu:A (2.81) BS01 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127675 6jdu:A (2.81) BS02 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127676 6jdu:A (2.81) BS03 ZN 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127677 6jdu:A (2.81) BS04 CA 3.6.4.13 GO:0005524 ... J9XNG9 32075207
    127678 6je8:A (1.798) BS01 ZN 3.2.1.52 GO:0000272 ... B2UP57 30846208
    127679 6jea:A (2.275) BS01 ZN 3.2.1.52 GO:0000272 ... B2UP57 30846208
    127680 6jeb:A (1.498) BS01 ZN 3.2.1.52 GO:0000272 ... B2UP57 30846208
    127681 6jed:A (1.57) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 31405855
    127682 6jed:A (1.57) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 31405855
    127683 6jee:A (1.3) BS01 CD ? GO:0005506 ... P02791 30993287
    127684 6jeq:A (1.802) BS05 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    127685 6jer:A (2.4) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127686 6jer:B (2.4) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127687 6jes:A (1.75) BS01 ZN N/A GO:0042586 ... N/A N/A
    127688 6jes:B (1.75) BS01 ZN N/A GO:0042586 ... N/A N/A
    127689 6jet:A (2.6) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127690 6jet:B (2.6) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127691 6jeu:A (2.1) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127692 6jeu:B (2.1) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127693 6jev:A (1.9) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127694 6jev:B (1.9) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127695 6jew:A (2.0) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127696 6jew:B (2.0) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127697 6jex:A (2.11) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127698 6jex:B (2.11) BS01 ZN 3.5.1.88 GO:0006412 ... B0VNL8 N/A
    127699 6jf1:A (1.95) BS02 ZN ? GO:0016020 ... A0A0H2UN92 31282873
    127700 6jf1:A (1.95) BS03 ZN ? GO:0016020 ... A0A0H2UN92 31282873
    127701 6jf1:A (1.95) BS04 ZN ? GO:0016020 ... A0A0H2UN92 31282873
    127702 6jf1:A (1.95) BS05 ZN ? GO:0016020 ... A0A0H2UN92 31282873
    127703 6jf1:A (1.95) BS06 ZN ? GO:0016020 ... A0A0H2UN92 31282873
    127704 6jf1:A (1.95) BS07 ZN ? GO:0016020 ... A0A0H2UN92 31282873
    127705 6jf3:A (2.01) BS01 ZN N/A GO:0042586 ... N/A N/A
    127706 6jf3:B (2.01) BS01 ZN N/A GO:0042586 ... N/A N/A
    127707 6jf4:A (2.0) BS01 ZN 3.5.1.88 GO:0006412 ... A0A098SKQ8 N/A
    127708 6jf4:B (2.0) BS01 ZN 3.5.1.88 GO:0006412 ... A0A098SKQ8 N/A
    127709 6jf5:A (2.0) BS01 ZN 3.5.1.88 GO:0006412 ... A0A098SKQ8 N/A
    127710 6jf5:B (2.0) BS01 ZN 3.5.1.88 GO:0006412 ... A0A098SKQ8 N/A
    127711 6jf6:A (2.35) BS01 ZN N/A GO:0042586 ... N/A N/A
    127712 6jf6:B (2.35) BS01 ZN N/A GO:0042586 ... N/A N/A
    127713 6jf6:C (2.35) BS02 ZN N/A GO:0042586 ... N/A N/A
    127714 6jf6:D (2.35) BS01 ZN N/A GO:0042586 ... N/A N/A
    127715 6jf7:A (2.0) BS01 ZN N/A GO:0042586 ... N/A N/A
    127716 6jf7:B (2.0) BS01 ZN N/A GO:0042586 ... N/A N/A
    127717 6jf8:A (1.7) BS01 ZN N/A GO:0042586 ... N/A N/A
    127718 6jf8:B (1.7) BS01 ZN N/A GO:0042586 ... N/A N/A
    127719 6jf8:C (1.7) BS01 ZN N/A GO:0042586 ... N/A N/A
    127720 6jf8:D (1.7) BS01 ZN N/A GO:0042586 ... N/A N/A
    127721 6jfj:A (1.932) BS08 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    127722 6jfm:A (2.09) BS01 CA 3.6.5.- GO:0003924 ... O95140 31664033
    127723 6jfm:A (2.09) BS02 CA 3.6.5.- GO:0003924 ... O95140 31664033
    127724 6jfm:B (2.09) BS01 CA 3.6.5.- GO:0003924 ... O95140 31664033
    127725 6jfo:A (1.6) BS02 MG 3.5.1.88 GO:0006412 ... P68826 N/A
    127726 6jfx:A (1.981) BS07 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    127727 6jg3:A (6.1) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127728 6jg3:B (6.1) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127729 6jg3:C (6.1) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127730 6jg3:D (6.1) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127731 6jgj:A (0.78) BS01 MG ? GO:0003674 ... P42212 31098020
    127732 6jgx:A (2.71) BS03 CD ? GO:0003677 ... Q93TP7 31548408
    127733 6jgx:A (2.71) BS04 CD ? GO:0003677 ... Q93TP7 31548408
    127734 6jgx:B (2.71) BS03 CD ? GO:0003677 ... Q93TP7 31548408
    127735 6jgx:B (2.71) BS04 CD ? GO:0003677 ... Q93TP7 31548408
    127736 6jgz:B (4.6) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127737 6jgz:D (4.6) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127738 6jgz:F (4.6) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127739 6jgz:H (4.6) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127740 6jh5:A (1.54) BS01 CA N/A GO:0004553 ... N/A 32917756
    127741 6jh6:B (4.8) BS02 ZN N/A GO:0005216 ... N/A 31792195
    127742 6jh6:D (4.8) BS02 ZN N/A GO:0005216 ... N/A 31792195
    127743 6jh6:F (4.8) BS02 ZN N/A GO:0005216 ... N/A 31792195
    127744 6jh6:H (4.8) BS02 ZN N/A GO:0005216 ... N/A 31792195
    127745 6jh8:A (2.149) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    127746 6jh9:A (1.739) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    127747 6jhf:A (1.71) BS01 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    127748 6jhg:A (1.891) BS01 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    127749 6jhh:A (2.025) BS08 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    127750 6jhi:A (2.319) BS06 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    127751 6jhi:A (2.319) BS07 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    127752 6jhj:A (1.69) BS01 CA N/A GO:0004553 ... N/A 32917756
    127753 6jhn:A (4.5) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127754 6jhn:A (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    127755 6jhn:C (4.5) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127756 6jhn:C (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    127757 6jhn:E (4.5) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127758 6jhn:E (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    127759 6jhn:G (4.5) BS01 ZN N/A GO:0005216 ... N/A 31792195
    127760 6jhn:G (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    127761 6ji0:A (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127762 6ji0:A (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    127763 6ji0:C (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127764 6ji0:C (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    127765 6ji0:E (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127766 6ji0:E (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    127767 6ji0:G (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127768 6ji0:G (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    127769 6ji2:A (3.0) BS03 MG ? GO:0003746 ... Q9YAV0 31611569
    127770 6ji2:E (3.0) BS02 MG ? GO:0003746 ... Q9YAV0 31611569
    127771 6ji8:A (3.6) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127772 6ji8:D (3.6) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127773 6ji8:G (3.6) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127774 6ji8:J (3.6) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127775 6jia:A (1.9) BS04 CA N/A GO:0004553 ... N/A 32917756
    127776 6jii:B (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127777 6jii:B (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    127778 6jii:E (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127779 6jii:E (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    127780 6jii:H (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127781 6jii:H (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    127782 6jii:K (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127783 6jii:K (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    127784 6jik:A (2.35) BS02 MG ? GO:0000148 ... A0A068C8U8 N/A
    127785 6jil:A (2.32) BS02 MG 6.3.3.5 GO:0003824 ... D2Z030 31793174
    127786 6jil:B (2.32) BS02 MG 6.3.3.5 GO:0003824 ... D2Z030 31793174
    127787 6jil:C (2.32) BS02 MG 6.3.3.5 GO:0003824 ... D2Z030 31793174
    127788 6jil:D (2.32) BS02 MG 6.3.3.5 GO:0003824 ... D2Z030 31793174
    127789 6jil:D (2.32) BS03 MG 6.3.3.5 GO:0003824 ... D2Z030 31793174
    127790 6jiu:A (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127791 6jiu:A (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    127792 6jiu:C (4.2) BS01 CA ? GO:0000086 ... P0DP23 31278385
    127793 6jiu:D (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127794 6jiu:D (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    127795 6jiu:F (4.2) BS01 CA ? GO:0000086 ... P0DP23 31278385
    127796 6jiu:G (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127797 6jiu:G (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    127798 6jiu:I (4.2) BS01 CA ? GO:0000086 ... P0DP23 31278385
    127799 6jiu:J (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    127800 6jiu:J (4.2) BS02 CA N/A GO:0005216 ... N/A 31278385
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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