Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    127401 6j4z:I (4.1) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    127402 6j4z:J (4.1) BS01 ZN ? GO:0000428 ... C4R009 30733384
    127403 6j4z:L (4.1) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    127404 6j4z:V (4.1) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    127405 6j50:A (4.7) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127406 6j50:A (4.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127407 6j50:A (4.7) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127408 6j50:B (4.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    127409 6j50:I (4.7) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    127410 6j50:I (4.7) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    127411 6j50:J (4.7) BS01 ZN ? GO:0000428 ... C4R009 30733384
    127412 6j50:L (4.7) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    127413 6j50:V (4.7) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    127414 6j51:A (4.2) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127415 6j51:A (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127416 6j51:A (4.2) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127417 6j51:B (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    127418 6j51:I (4.2) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    127419 6j51:I (4.2) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    127420 6j51:J (4.2) BS01 ZN ? GO:0000428 ... C4R009 30733384
    127421 6j51:L (4.2) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    127422 6j51:M (4.2) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    127423 6j51:V (4.2) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    127424 6j55:A (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127425 6j55:B (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127426 6j55:C (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127427 6j55:D (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127428 6j55:E (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127429 6j55:F (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127430 6j55:G (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127431 6j55:H (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127432 6j55:I (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127433 6j55:J (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127434 6j55:K (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127435 6j55:L (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    127436 6j5i:B (3.34) BS02 MG ? GO:0005524 ... P80021 31197009
    127437 6j5i:D (3.34) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    127438 6j5j:D (3.45) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    127439 6j5k:AD (6.2) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    127440 6j5k:BB (6.2) BS02 MG ? GO:0005524 ... P80021 31197009
    127441 6j5k:BD (6.2) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    127442 6j5k:CB (6.2) BS02 MG ? GO:0005524 ... P80021 31197009
    127443 6j5k:CD (6.2) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    127444 6j5k:D (6.2) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    127445 6j5x:A (1.79) BS01 MN 4.1.1.-
    5.3.3.-
    GO:0003824 ... Q8NLC0 31657110
    127446 6j5x:B (1.79) BS01 MN 4.1.1.-
    5.3.3.-
    GO:0003824 ... Q8NLC0 31657110
    127447 6j5y:A (1.98) BS02 MN ? GO:0003824 ... Q9I111 31657110
    127448 6j63:A (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    127449 6j63:B (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    127450 6j63:C (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    127451 6j63:D (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    127452 6j66:A (1.953) BS01 CA 3.1.6.12 N/A A0A0C5AQI9 31244815
    127453 6j66:B (1.953) BS01 CA 3.1.6.12 N/A A0A0C5AQI9 31244815
    127454 6j6g:C (3.2) BS03 MG ? GO:0000244 ... P36048 30879786
    127455 6j6g:Q (3.2) BS03 ZN ? GO:0000398 ... P38241 30879786
    127456 6j6g:Q (3.2) BS04 ZN ? GO:0000398 ... P38241 30879786
    127457 6j6g:R (3.2) BS04 ZN ? GO:0000387 ... Q12046 30879786
    127458 6j6g:T (3.2) BS03 ZN ? GO:0000282 ... P25337 30879786
    127459 6j6g:T (3.2) BS04 ZN ? GO:0000282 ... P25337 30879786
    127460 6j6g:T (3.2) BS05 ZN ? GO:0000282 ... P25337 30879786
    127461 6j6h:C (3.6) BS03 MG ? GO:0000244 ... P36048 30879786
    127462 6j6h:Q (3.6) BS03 ZN ? GO:0000398 ... P38241 30879786
    127463 6j6h:Q (3.6) BS04 ZN ? GO:0000398 ... P38241 30879786
    127464 6j6h:R (3.6) BS03 ZN ? GO:0000387 ... Q12046 30879786
    127465 6j6h:T (3.6) BS04 ZN ? GO:0000282 ... P25337 30879786
    127466 6j6h:T (3.6) BS05 ZN ? GO:0000282 ... P25337 30879786
    127467 6j6h:T (3.6) BS06 ZN ? GO:0000282 ... P25337 30879786
    127468 6j6n:C (3.86) BS03 MG ? GO:0000244 ... P36048 30879786
    127469 6j6n:Q (3.86) BS03 ZN ? GO:0000398 ... P38241 30879786
    127470 6j6n:Q (3.86) BS04 ZN ? GO:0000398 ... P38241 30879786
    127471 6j6n:R (3.86) BS04 ZN ? GO:0000387 ... Q12046 30879786
    127472 6j6n:T (3.86) BS03 ZN ? GO:0000282 ... P25337 30879786
    127473 6j6n:T (3.86) BS04 ZN ? GO:0000282 ... P25337 30879786
    127474 6j6n:T (3.86) BS05 ZN ? GO:0000282 ... P25337 30879786
    127475 6j6q:C (3.7) BS03 MG ? GO:0000244 ... P36048 30879786
    127476 6j6q:F (3.7) BS03 ZN ? GO:0000349 ... P28320 30879786
    127477 6j6q:Q (3.7) BS03 ZN ? GO:0000398 ... P38241 30879786
    127478 6j6q:Q (3.7) BS04 ZN ? GO:0000398 ... P38241 30879786
    127479 6j6q:R (3.7) BS04 ZN ? GO:0000387 ... Q12046 30879786
    127480 6j6q:T (3.7) BS03 ZN ? GO:0000282 ... P25337 30879786
    127481 6j6q:T (3.7) BS04 ZN ? GO:0000282 ... P25337 30879786
    127482 6j6q:T (3.7) BS05 ZN ? GO:0000282 ... P25337 30879786
    127483 6j6t:A (2.36) BS01 ZN 3.5.1.98 N/A Q8GXJ1 32878973
    127484 6j6t:A (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    127485 6j6t:B (2.36) BS01 ZN 3.5.1.98 N/A Q8GXJ1 32878973
    127486 6j6t:B (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    127487 6j6t:C (2.36) BS01 ZN 3.5.1.98 N/A Q8GXJ1 32878973
    127488 6j6t:C (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    127489 6j6t:D (2.36) BS01 ZN 3.5.1.98 N/A Q8GXJ1 32878973
    127490 6j6t:D (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    127491 6j6x:B (2.962) BS01 MG 2.5.1.60 GO:0003824 ... P53611 N/A
    127492 6j72:A (2.2) BS02 MG ? GO:0003924 ... I7FE16 31467269
    127493 6j74:B (3.212) BS01 ZN 2.5.1.60 GO:0003824 ... P53611 N/A
    127494 6j7e:A (2.4) BS02 MG ? GO:0005524 ... G3XCV0 31268665
    127495 6j7n:A (2.294) BS01 MG ? GO:0000166 ... P96356 32382148
    127496 6j7n:A (2.294) BS02 MG ? GO:0000166 ... P96356 32382148
    127497 6j7n:A (2.294) BS03 MG ? GO:0000166 ... P96356 32382148
    127498 6j7n:A (2.294) BS04 MG ? GO:0000166 ... P96356 32382148
    127499 6j7n:A (2.294) BS05 MG ? GO:0000166 ... P96356 32382148
    127500 6j7n:A (2.294) BS06 MG ? GO:0000166 ... P96356 32382148
    127501 6j7n:A (2.294) BS07 MG ? GO:0000166 ... P96356 32382148
    127502 6j7o:A (1.9) BS01 MG ? GO:0000166 ... P96356 32382148
    127503 6j7o:A (1.9) BS02 MG ? GO:0000166 ... P96356 32382148
    127504 6j7o:A (1.9) BS03 MG ? GO:0000166 ... P96356 32382148
    127505 6j7o:A (1.9) BS04 MG ? GO:0000166 ... P96356 32382148
    127506 6j7o:A (1.9) BS05 MG ? GO:0000166 ... P96356 32382148
    127507 6j7o:A (1.9) BS06 MG ? GO:0000166 ... P96356 32382148
    127508 6j7o:A (1.9) BS07 MG ? GO:0000166 ... P96356 32382148
    127509 6j7o:A (1.9) BS08 MG ? GO:0000166 ... P96356 32382148
    127510 6j7p:A (2.629) BS01 MG ? GO:0000166 ... P96356 32382148
    127511 6j7q:A (1.85) BS01 MG ? GO:0000166 ... P96356 32382148
    127512 6j7q:A (1.85) BS02 MG ? GO:0000166 ... P96356 32382148
    127513 6j7q:A (1.85) BS03 CA ? GO:0000166 ... P96356 32382148
    127514 6j7q:A (1.85) BS04 CA ? GO:0000166 ... P96356 32382148
    127515 6j7q:A (1.85) BS05 CA ? GO:0000166 ... P96356 32382148
    127516 6j7r:A (2.299) BS01 MG ? GO:0000166 ... P96356 32382148
    127517 6j7r:A (2.299) BS02 MG ? GO:0000166 ... P96356 32382148
    127518 6j7r:A (2.299) BS03 MG ? GO:0000166 ... P96356 32382148
    127519 6j7r:A (2.299) BS04 MG ? GO:0000166 ... P96356 32382148
    127520 6j7r:A (2.299) BS05 MG ? GO:0000166 ... P96356 32382148
    127521 6j7r:A (2.299) BS06 MG ? GO:0000166 ... P96356 32382148
    127522 6j7r:A (2.299) BS07 MG ? GO:0000166 ... P96356 32382148
    127523 6j7r:A (2.299) BS08 MG ? GO:0000166 ... P96356 32382148
    127524 6j7r:A (2.299) BS09 MG ? GO:0000166 ... P96356 32382148
    127525 6j7r:A (2.299) BS10 MG ? GO:0000166 ... P96356 32382148
    127526 6j7r:A (2.299) BS11 MG ? GO:0000166 ... P96356 32382148
    127527 6j7s:A (2.102) BS01 MG ? GO:0000166 ... P96356 32382148
    127528 6j7s:A (2.102) BS02 MG ? GO:0000166 ... P96356 32382148
    127529 6j7s:A (2.102) BS03 MG ? GO:0000166 ... P96356 32382148
    127530 6j7s:A (2.102) BS04 MG ? GO:0000166 ... P96356 32382148
    127531 6j7s:A (2.102) BS05 MG ? GO:0000166 ... P96356 32382148
    127532 6j7t:A (1.903) BS01 MG ? GO:0000166 ... P96356 32382148
    127533 6j7t:A (1.903) BS02 MG ? GO:0000166 ... P96356 32382148
    127534 6j7t:A (1.903) BS03 MG ? GO:0000166 ... P96356 32382148
    127535 6j7t:A (1.903) BS04 MG ? GO:0000166 ... P96356 32382148
    127536 6j7t:A (1.903) BS05 MG ? GO:0000166 ... P96356 32382148
    127537 6j7t:A (1.903) BS06 MG ? GO:0000166 ... P96356 32382148
    127538 6j7t:A (1.903) BS07 MG ? GO:0000166 ... P96356 32382148
    127539 6j7t:A (1.903) BS08 MG ? GO:0000166 ... P96356 32382148
    127540 6j7t:A (1.903) BS09 MG ? GO:0000166 ... P96356 32382148
    127541 6j7y:B (2.203) BS02 MG 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    127542 6j7z:B (2.005) BS02 MG 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    127543 6j80:B (1.812) BS02 MG 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    127544 6j8e:A (3.0) BS03 NA ? GO:0001518 ... Q99250 30765605
    127545 6j8m:A (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 31274413
    127546 6j8m:A (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 31274413
    127547 6j8m:F (1.9) BS01 ZN ? GO:0005740 ... P00428 31274413
    127548 6j8m:N (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 31274413
    127549 6j8m:N (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 31274413
    127550 6j8m:S (1.9) BS01 ZN ? GO:0005740 ... P00428 31274413
    127551 6j8r:A (1.575) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31269398
    127552 6j8r:A (1.575) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31269398
    127553 6j92:A (2.421) BS01 ZN 4.1.1.5 GO:0016831 ... P05361 N/A
    127554 6j92:B (2.421) BS01 ZN 4.1.1.5 GO:0016831 ... P05361 N/A
    127555 6j98:A (1.56) BS01 ZN ? GO:0046872 ... A0A0E3CPJ0 N/A
    127556 6j98:A (1.56) BS02 ZN ? GO:0046872 ... A0A0E3CPJ0 N/A
    127557 6j9e:D (3.41) BS04 MG 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    127558 6j9e:D (3.41) BS05 ZN 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    127559 6j9f:D (3.95) BS04 MG 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    127560 6j9f:D (3.95) BS05 ZN 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    127561 6j9f:D (3.95) BS06 ZN 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    127562 6j9j:A (1.78) BS02 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32699416
    127563 6j9j:A (1.78) BS03 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32699416
    127564 6j9j:A (1.78) BS04 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32699416
    127565 6jai:A (2.1) BS03 CA ? N/A Q5SLD7 31608555
    127566 6jas:A (2.501) BS01 FE ? GO:0005515 ... P02787 N/A
    127567 6jau:A (1.905) BS01 CA ? GO:0005515 ... P38108 32747658
    127568 6jbk:A (2.45) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    127569 6jbk:C (2.45) BS04 CA 3.6.4.- GO:0000287 ... P68135 N/A
    127570 6jbk:E (2.45) BS04 CA 3.6.4.- GO:0000287 ... P68135 N/A
    127571 6jbk:G (2.45) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    127572 6jbq:D (4.02) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 31131408
    127573 6jbq:D (4.02) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31131408
    127574 6jcj:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 30803758
    127575 6jcj:B (2.5) BS02 MG ? GO:0000226 ... Q6B856 30803758
    127576 6jcj:C (2.5) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 30803758
    127577 6jcl:A (1.644) BS02 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127578 6jcl:A (1.644) BS03 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127579 6jcl:B (1.644) BS02 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127580 6jcl:C (1.644) BS01 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127581 6jcl:C (1.644) BS02 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127582 6jcl:D (1.644) BS02 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127583 6jcl:E (1.644) BS01 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127584 6jcl:F (1.644) BS01 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127585 6jcl:F (1.644) BS02 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127586 6jcl:G (1.644) BS02 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127587 6jcl:G (1.644) BS03 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127588 6jcl:H (1.644) BS01 SR 2.1.1.6 GO:0005886 ... O07431 31147608
    127589 6jcw:A (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127590 6jcw:B (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127591 6jcw:C (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127592 6jcw:D (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127593 6jcw:E (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127594 6jcw:F (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127595 6jcw:G (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127596 6jcw:H (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127597 6jcw:I (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127598 6jcw:J (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127599 6jcw:K (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515
    127600 6jcw:L (3.04) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 30921515

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218