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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    127201 6izr:J (4.7) BS02 MG N/A N/A N/A 31253774
    127202 6izr:K (4.7) BS02 MG N/A N/A N/A 31253774
    127203 6izr:M (4.7) BS02 MG N/A N/A N/A 31253774
    127204 6izr:Q (4.7) BS02 MG N/A N/A N/A 31253774
    127205 6izr:b (4.7) BS02 MG N/A N/A N/A 31253774
    127206 6izr:c (4.7) BS02 MG N/A N/A N/A 31253774
    127207 6izr:e (4.7) BS02 MG N/A N/A N/A 31253774
    127208 6izr:f (4.7) BS02 MG N/A N/A N/A 31253774
    127209 6izr:h (4.7) BS02 MG N/A N/A N/A 31253774
    127210 6izr:i (4.7) BS02 MG N/A N/A N/A 31253774
    127211 6izr:l (4.7) BS02 MG N/A N/A N/A 31253774
    127212 6izr:n (4.7) BS02 MG N/A N/A N/A 31253774
    127213 6izr:q (4.7) BS02 MG N/A N/A N/A 31253774
    127214 6izr:r (4.7) BS02 MG N/A N/A N/A 31253774
    127215 6izr:t (4.7) BS02 MG N/A N/A N/A 31253774
    127216 6izr:u (4.7) BS02 MG N/A N/A N/A 31253774
    127217 6izr:w (4.7) BS02 MG N/A N/A N/A 31253774
    127218 6izr:x (4.7) BS02 MG N/A N/A N/A 31253774
    127219 6izv:0 (4.2) BS02 MG N/A N/A N/A 31253774
    127220 6izv:1 (4.2) BS02 MG N/A N/A N/A 31253774
    127221 6izw:A (2.4) BS02 MG 3.6.5.2 GO:0003924 ... Q1DB04 31560685
    127222 6izx:A (2.43) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... P14340 31738758
    127223 6izx:A (2.43) BS02 CO 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... P14340 31738758
    127224 6izx:A (2.43) BS03 CO 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... P14340 31738758
    127225 6izx:A (2.43) BS04 CO 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... P14340 31738758
    127226 6izx:A (2.43) BS05 CO 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... P14340 31738758
    127227 6izy:A (2.11) BS01 CO 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... P14340 31738758
    127228 6izy:A (2.11) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... P14340 31738758
    127229 6izz:A (1.97) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q5I3C1 31738758
    127230 6izz:A (1.97) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q5I3C1 31738758
    127231 6j00:A (2.14) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q5I3C1 31738758
    127232 6j00:A (2.14) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q5I3C1 31738758
    127233 6j02:A (1.803) BS01 CA ? GO:0016020 ... P30204 31653705
    127234 6j02:B (1.803) BS01 CA ? GO:0016020 ... P30204 31653705
    127235 6j03:A (1.48) BS02 CA ? GO:0046872 ... V5TER4 N/A
    127236 6j06:B (2.65) BS02 CA ? N/A O00481 30902636
    127237 6j07:B (3.298) BS01 ZN ? GO:0070197 ... Q8NA31 30718482
    127238 6j0d:A (1.9) BS01 ZN ? GO:0003677 ... Q653D5 31278262
    127239 6j0d:A (1.9) BS02 ZN ? GO:0003677 ... Q653D5 31278262
    127240 6j23:A (1.9) BS02 ZN 3.5.4.- GO:0005737 ... Q8LPL7 31318636
    127241 6j26:A (2.0) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 31162806
    127242 6j26:B (2.0) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 31162806
    127243 6j27:A (1.66) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    127244 6j27:B (1.66) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    127245 6j27:C (1.66) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    127246 6j27:D (1.66) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    127247 6j28:A (1.9) BS03 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    127248 6j28:B (1.9) BS03 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    127249 6j28:C (1.9) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    127250 6j28:D (1.9) BS01 FE 2.5.1.128 GO:0005737 ... Q72L89 31162806
    127251 6j2l:A (2.17) BS01 ZN 3.5.4.19
    3.6.1.31    		 GO:0000105 ... P37793 31235255
    127252 6j2l:A (2.17) BS02 ZN 3.5.4.19
    3.6.1.31    		 GO:0000105 ... P37793 31235255
    127253 6j2l:A (2.17) BS03 ZN 3.5.4.19
    3.6.1.31    		 GO:0000105 ... P37793 31235255
    127254 6j2l:B (2.17) BS01 MG 3.5.4.19
    3.6.1.31    		 GO:0000105 ... P37793 31235255
    127255 6j2l:B (2.17) BS02 ZN 3.5.4.19
    3.6.1.31    		 GO:0000105 ... P37793 31235255
    127256 6j2p:A (2.85) BS02 ZN ? GO:0048188 ... Q03012 31253666
    127257 6j2p:A (2.85) BS03 ZN ? GO:0048188 ... Q03012 31253666
    127258 6j2p:A (2.85) BS04 ZN ? GO:0048188 ... Q03012 31253666
    127259 6j2p:B (2.85) BS02 ZN ? GO:0048188 ... Q03012 31253666
    127260 6j2p:B (2.85) BS03 ZN ? GO:0048188 ... Q03012 31253666
    127261 6j2p:B (2.85) BS04 ZN ? GO:0048188 ... Q03012 31253666
    127262 6j2p:C (2.85) BS02 ZN ? GO:0048188 ... Q03012 31253666
    127263 6j2p:C (2.85) BS03 ZN ? GO:0048188 ... Q03012 31253666
    127264 6j2p:C (2.85) BS04 ZN ? GO:0048188 ... Q03012 31253666
    127265 6j2p:D (2.85) BS02 ZN ? GO:0048188 ... Q03012 31253666
    127266 6j2p:D (2.85) BS03 ZN ? GO:0048188 ... Q03012 31253666
    127267 6j2p:D (2.85) BS04 ZN ? GO:0048188 ... Q03012 31253666
    127268 6j2s:A (1.73005) BS01 GA ? GO:0005615 ... Q9HVA8 31475514
    127269 6j2s:B (1.73005) BS01 GA ? GO:0005615 ... Q9HVA8 31475514
    127270 6j2u:B (1.3) BS01 ZN ? GO:0016491 ... Q93HL2 N/A
    127271 6j2u:B (1.3) BS02 ZN ? GO:0016491 ... Q93HL2 N/A
    127272 6j33:A (1.297) BS01 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127273 6j33:A (1.297) BS02 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127274 6j33:A (1.297) BS03 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127275 6j33:A (1.297) BS04 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127276 6j33:A (1.297) BS05 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127277 6j33:A (1.297) BS06 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127278 6j33:A (1.297) BS07 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127279 6j33:B (1.297) BS01 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127280 6j33:B (1.297) BS02 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127281 6j33:B (1.297) BS03 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127282 6j33:B (1.297) BS04 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127283 6j33:B (1.297) BS05 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127284 6j33:B (1.297) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127285 6j34:A (1.498) BS06 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127286 6j34:A (1.498) BS07 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127287 6j34:A (1.498) BS08 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127288 6j35:A (1.839) BS01 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127289 6j35:A (1.839) BS02 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127290 6j35:A (1.839) BS03 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127291 6j35:A (1.839) BS04 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127292 6j35:B (1.839) BS01 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127293 6j35:B (1.839) BS02 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127294 6j35:B (1.839) BS03 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127295 6j35:B (1.839) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127296 6j3d:A (1.7) BS01 ZN 4.1.1.5 GO:0016831 ... E0U503 N/A
    127297 6j3d:B (1.7) BS01 ZN 4.1.1.5 GO:0016831 ... E0U503 N/A
    127298 6j3x:A (1.62) BS04 CA 3.2.1.60 GO:0004556 ... P22963 N/A
    127299 6j3x:A (1.62) BS05 CA 3.2.1.60 GO:0004556 ... P22963 N/A
    127300 6j3y:A (3.3) BS02 FE2 N/A GO:0009055 ... N/A 31358960
    127301 6j3y:D (3.3) BS02 FE2 N/A GO:0009523 ... N/A 31358960
    127302 6j3y:a (3.3) BS02 FE2 N/A GO:0009055 ... N/A 31358960
    127303 6j3y:d (3.3) BS02 FE2 N/A GO:0009523 ... N/A 31358960
    127304 6j3z:A (3.6) BS02 FE2 N/A GO:0009055 ... N/A 31358960
    127305 6j3z:D (3.6) BS02 FE2 N/A GO:0009523 ... N/A 31358960
    127306 6j3z:a (3.6) BS02 FE2 N/A GO:0009055 ... N/A 31358960
    127307 6j3z:d (3.6) BS02 FE2 N/A GO:0009523 ... N/A 31358960
    127308 6j40:A (3.8) BS02 FE2 N/A GO:0009055 ... N/A 31358960
    127309 6j40:D (3.8) BS02 FE2 N/A GO:0009523 ... N/A 31358960
    127310 6j40:a (3.8) BS02 FE2 N/A GO:0009055 ... N/A 31358960
    127311 6j40:d (3.8) BS02 FE2 N/A GO:0009523 ... N/A 31358960
    127312 6j42:A (2.492) BS01 MN ? GO:0046872 ... Q8YSJ5 30993731
    127313 6j42:A (2.492) BS02 MN ? GO:0046872 ... Q8YSJ5 30993731
    127314 6j42:A (2.492) BS03 CA ? GO:0046872 ... Q8YSJ5 30993731
    127315 6j42:B (2.492) BS01 MN ? GO:0046872 ... Q8YSJ5 30993731
    127316 6j42:B (2.492) BS02 MN ? GO:0046872 ... Q8YSJ5 30993731
    127317 6j42:B (2.492) BS03 CA ? GO:0046872 ... Q8YSJ5 30993731
    127318 6j42:B (2.492) BS04 CA ? GO:0046872 ... Q8YSJ5 30993731
    127319 6j42:C (2.492) BS01 CA ? GO:0046872 ... Q8YSJ5 30993731
    127320 6j42:C (2.492) BS02 MN ? GO:0046872 ... Q8YSJ5 30993731
    127321 6j42:C (2.492) BS03 MN ? GO:0046872 ... Q8YSJ5 30993731
    127322 6j42:C (2.492) BS04 CA ? GO:0046872 ... Q8YSJ5 30993731
    127323 6j43:A (1.85) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32280322
    127324 6j43:A (1.85) BS02 CA 3.4.21.64 GO:0004252 ... P06873 32280322
    127325 6j44:A (2.06) BS01 ZN ? GO:0003684 ... P23025 31092331
    127326 6j4b:A (1.58) BS01 ZN ? N/A X2D812 31681917
    127327 6j4c:A (1.58) BS01 ZN ? N/A X2D812 31681917
    127328 6j4e:B (3.126) BS03 ZN ? GO:0003700 ... Q9SI37 N/A
    127329 6j4f:B (2.4) BS03 ZN ? GO:0003700 ... Q9FG77 N/A
    127330 6j4f:F (2.4) BS03 ZN ? GO:0003700 ... Q9FG77 N/A
    127331 6j4g:B (3.0) BS03 ZN ? GO:0003700 ... Q8S8P5 N/A
    127332 6j4h:A (1.641) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127333 6j4h:A (1.641) BS07 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127334 6j4h:A (1.641) BS08 MG 3.2.1.41 GO:0004553 ... W9BQ28 31478902
    127335 6j4j:A (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127336 6j4j:A (2.101) BS02 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127337 6j4j:B (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127338 6j4j:B (2.101) BS02 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127339 6j4j:C (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127340 6j4j:D (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127341 6j4j:E (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127342 6j4j:H (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127343 6j4m:A (2.598) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127344 6j4m:A (2.598) BS02 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127345 6j4m:A (2.598) BS03 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127346 6j4m:H (2.598) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127347 6j4m:H (2.598) BS02 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127348 6j4m:H (2.598) BS03 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    127349 6j4n:A (2.1) BS01 ZN N/A N/A N/A 30279316
    127350 6j4n:A (2.1) BS02 ZN N/A N/A N/A 30279316
    127351 6j4n:B (2.1) BS01 ZN N/A N/A N/A 30279316
    127352 6j4n:B (2.1) BS02 ZN N/A N/A N/A 30279316
    127353 6j4n:C (2.1) BS01 ZN N/A N/A N/A 30279316
    127354 6j4n:C (2.1) BS02 ZN N/A N/A N/A 30279316
    127355 6j4n:D (2.1) BS01 ZN N/A N/A N/A 30279316
    127356 6j4n:D (2.1) BS02 ZN N/A N/A N/A 30279316
    127357 6j4n:E (2.1) BS01 ZN N/A N/A N/A 30279316
    127358 6j4n:E (2.1) BS02 ZN N/A N/A N/A 30279316
    127359 6j4n:F (2.1) BS01 ZN N/A N/A N/A 30279316
    127360 6j4n:F (2.1) BS02 ZN N/A N/A N/A 30279316
    127361 6j4n:G (2.1) BS01 ZN N/A N/A N/A 30279316
    127362 6j4n:G (2.1) BS02 ZN N/A N/A N/A 30279316
    127363 6j4n:H (2.1) BS01 ZN N/A N/A N/A 30279316
    127364 6j4n:H (2.1) BS02 ZN N/A N/A N/A 30279316
    127365 6j4t:A (1.82) BS02 ZN 3.5.4.- GO:0005737 ... Q8LPL7 31318636
    127366 6j4w:A (7.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127367 6j4w:A (7.9) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127368 6j4w:A (7.9) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127369 6j4w:B (7.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    127370 6j4w:I (7.9) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    127371 6j4w:I (7.9) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    127372 6j4w:J (7.9) BS01 ZN ? GO:0000428 ... F2QTN1 30733384
    127373 6j4w:L (7.9) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    127374 6j4w:M (7.9) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    127375 6j4w:V (7.9) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    127376 6j4x:A (4.3) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127377 6j4x:A (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127378 6j4x:A (4.3) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127379 6j4x:B (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    127380 6j4x:I (4.3) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    127381 6j4x:I (4.3) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    127382 6j4x:J (4.3) BS01 ZN ? GO:0000428 ... C4R009 30733384
    127383 6j4x:L (4.3) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    127384 6j4x:M (4.3) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    127385 6j4x:V (4.3) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    127386 6j4y:A (4.3) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127387 6j4y:A (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127388 6j4y:A (4.3) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127389 6j4y:B (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    127390 6j4y:I (4.3) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    127391 6j4y:I (4.3) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    127392 6j4y:J (4.3) BS01 ZN ? GO:0000428 ... C4R009 30733384
    127393 6j4y:L (4.3) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    127394 6j4y:M (4.3) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    127395 6j4y:V (4.3) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    127396 6j4z:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127397 6j4z:A (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127398 6j4z:A (4.1) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    127399 6j4z:B (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    127400 6j4z:I (4.1) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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