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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    127001 6iu9:A (3.0) BS01 ZN N/A GO:0005384 ... N/A 30742036
    127002 6iu9:A (3.0) BS02 FE2 N/A GO:0005384 ... N/A 30742036
    127003 6iu9:A (3.0) BS03 ZN N/A GO:0005384 ... N/A 30742036
    127004 6iu9:B (3.0) BS01 ZN N/A GO:0005384 ... N/A 30742036
    127005 6iu9:B (3.0) BS02 FE2 N/A GO:0005384 ... N/A 30742036
    127006 6iu9:B (3.0) BS03 ZN N/A GO:0005384 ... N/A 30742036
    127007 6iu9:C (3.0) BS01 ZN N/A GO:0005384 ... N/A 30742036
    127008 6iu9:C (3.0) BS02 ZN N/A GO:0005384 ... N/A 30742036
    127009 6iu9:C (3.0) BS03 ZN N/A GO:0005384 ... N/A 30742036
    127010 6iu9:C (3.0) BS04 ZN N/A GO:0005384 ... N/A 30742036
    127011 6iu9:C (3.0) BS05 FE2 N/A GO:0005384 ... N/A 30742036
    127012 6iu9:D (3.0) BS01 ZN N/A GO:0005384 ... N/A 30742036
    127013 6iu9:D (3.0) BS02 ZN N/A GO:0005384 ... N/A 30742036
    127014 6iu9:D (3.0) BS03 FE2 N/A GO:0005384 ... N/A 30742036
    127015 6iu9:E (3.0) BS01 ZN N/A GO:0005384 ... N/A 30742036
    127016 6iu9:E (3.0) BS02 FE2 N/A GO:0005384 ... N/A 30742036
    127017 6iu9:E (3.0) BS03 ZN N/A GO:0005384 ... N/A 30742036
    127018 6iu9:F (3.0) BS01 ZN N/A GO:0005384 ... N/A 30742036
    127019 6iu9:F (3.0) BS02 FE2 N/A GO:0005384 ... N/A 30742036
    127020 6iu9:F (3.0) BS03 ZN N/A GO:0005384 ... N/A 30742036
    127021 6iu9:H (3.0) BS01 ZN N/A GO:0005384 ... N/A 30742036
    127022 6iu9:H (3.0) BS02 FE2 N/A GO:0005384 ... N/A 30742036
    127023 6iu9:H (3.0) BS03 ZN N/A GO:0005384 ... N/A 30742036
    127024 6iu9:I (3.0) BS01 ZN N/A GO:0005384 ... N/A 30742036
    127025 6iu9:I (3.0) BS02 ZN N/A GO:0005384 ... N/A 30742036
    127026 6iu9:I (3.0) BS03 ZN N/A GO:0005384 ... N/A 30742036
    127027 6iuc:B (3.4) BS04 MG ? GO:0005524 ... O25759 30544248
    127028 6iuc:C (3.4) BS04 MG ? GO:0005524 ... O25759 30544248
    127029 6iuc:D (3.4) BS05 MG ? GO:0005524 ... O25759 30544248
    127030 6iuq:A (2.348) BS01 FE2 ? GO:0005506 ... A0A4P1LYH8 N/A
    127031 6iuq:B (2.348) BS01 FE2 ? GO:0005506 ... A0A4P1LYH8 N/A
    127032 6iux:A (1.195) BS01 MG 3.2.2.19 GO:0000287 ... P54922 N/A
    127033 6iuy:A (2.2) BS02 MG 1.1.1.8 GO:0005975 ... Q52ZA0 31762135
    127034 6iuy:B (2.2) BS02 MG 1.1.1.8 GO:0005975 ... Q52ZA0 31762135
    127035 6iv0:A (2.9) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127036 6iv0:A (2.9) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127037 6iv0:B (2.9) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127038 6iv0:C (2.9) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127039 6iv0:D (2.9) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127040 6iv0:E (2.9) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127041 6iv1:A (3.18) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127042 6iv1:B (3.18) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127043 6iv1:C (3.18) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127044 6iv1:D (3.18) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127045 6iv1:E (3.18) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127046 6iv1:E (3.18) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127047 6iv2:A (2.62) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127048 6iv2:A (2.62) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127049 6iv2:B (2.62) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127050 6iv2:B (2.62) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127051 6iv2:C (2.62) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127052 6iv2:C (2.62) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127053 6iv2:D (2.62) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127054 6iv2:E (2.62) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127055 6iv3:A (2.515) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127056 6iv3:A (2.515) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127057 6iv3:B (2.515) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127058 6iv3:C (2.515) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127059 6iv3:C (2.515) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127060 6iv3:C (2.515) BS03 ZN N/A GO:0005254 ... N/A 31263784
    127061 6iv3:D (2.515) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127062 6iv3:D (2.515) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127063 6iv3:E (2.515) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127064 6iv4:A (3.14) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127065 6iv4:B (3.14) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127066 6iv4:C (3.14) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127067 6iv4:C (3.14) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127068 6iv4:D (3.14) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127069 6iv4:D (3.14) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127070 6iv4:E (3.14) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127071 6iv5:A (1.749) BS02 ZN 3.5.4.- GO:0005737 ... Q8LPL7 31318636
    127072 6iv9:A (1.86) BS02 MG ? GO:0046872 ... A0A1C5SD84 31186424
    127073 6ive:A (2.3) BS01 ZN ? N/A Q5SH51 30895492
    127074 6ive:B (2.3) BS02 ZN ? N/A Q5SH51 30895492
    127075 6ive:C (2.3) BS02 ZN ? N/A Q5SH51 30895492
    127076 6ive:D (2.3) BS01 ZN ? N/A Q5SH51 30895492
    127077 6ive:E (2.3) BS02 ZN ? N/A Q5SH51 30895492
    127078 6ive:F (2.3) BS02 ZN ? N/A Q5SH51 30895492
    127079 6ivj:A (2.77) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127080 6ivj:A (2.77) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127081 6ivj:B (2.77) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127082 6ivj:C (2.77) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127083 6ivj:D (2.77) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127084 6ivj:E (2.77) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127085 6ivj:E (2.77) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127086 6ivk:A (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127087 6ivk:A (2.65) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127088 6ivk:B (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127089 6ivk:C (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127090 6ivk:D (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127091 6ivk:E (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127092 6ivk:E (2.65) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127093 6ivl:A (3.4) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127094 6ivl:A (3.4) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127095 6ivl:B (3.4) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127096 6ivl:C (3.4) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127097 6ivl:C (3.4) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127098 6ivl:D (3.4) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127099 6ivl:E (3.4) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127100 6ivl:E (3.4) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127101 6ivm:A (2.95) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127102 6ivm:A (2.95) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127103 6ivm:B (2.95) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127104 6ivm:C (2.95) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127105 6ivm:D (2.95) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127106 6ivm:E (2.95) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127107 6ivm:E (2.95) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127108 6ivn:A (3.1) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127109 6ivn:B (3.1) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127110 6ivn:C (3.1) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127111 6ivn:D (3.1) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127112 6ivn:E (3.1) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127113 6ivo:A (2.45) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127114 6ivo:A (2.45) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127115 6ivo:B (2.45) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127116 6ivo:C (2.45) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127117 6ivo:C (2.45) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127118 6ivo:D (2.45) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127119 6ivo:E (2.45) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127120 6ivo:E (2.45) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127121 6ivp:A (3.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127122 6ivp:B (3.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127123 6ivp:C (3.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127124 6ivp:D (3.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127125 6ivp:E (3.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127126 6ivq:A (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127127 6ivq:A (2.65) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127128 6ivq:B (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127129 6ivq:C (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127130 6ivq:D (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127131 6ivq:E (2.65) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127132 6ivq:E (2.65) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127133 6ivr:A (2.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127134 6ivr:A (2.8) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127135 6ivr:B (2.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127136 6ivr:C (2.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127137 6ivr:D (2.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127138 6ivr:E (2.8) BS01 ZN ? GO:0005254 ... W9BH30 31263784
    127139 6ivr:E (2.8) BS02 ZN ? GO:0005254 ... W9BH30 31263784
    127140 6ivw:A (3.72) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127141 6ivw:A (3.72) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127142 6ivw:B (3.72) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127143 6ivw:C (3.72) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127144 6ivw:D (3.72) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127145 6ivw:D (3.72) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127146 6ivw:E (3.72) BS01 ZN N/A GO:0005254 ... N/A 31263784
    127147 6ivw:E (3.72) BS02 ZN N/A GO:0005254 ... N/A 31263784
    127148 6ivy:A (2.0) BS01 FE ? GO:0005615 ... Q9HVA8 31475514
    127149 6ivy:B (2.0) BS01 FE ? GO:0005615 ... Q9HVA8 31475514
    127150 6iw6:A (2.402) BS01 ZN 2.7.7.52 GO:0016779 ... Q5TAX3 31036859
    127151 6iw6:A (2.402) BS02 ZN 2.7.7.52 GO:0016779 ... Q5TAX3 31036859
    127152 6iw6:B (2.402) BS01 ZN 2.7.7.52 GO:0016779 ... Q5TAX3 31036859
    127153 6iw6:B (2.402) BS02 ZN 2.7.7.52 GO:0016779 ... Q5TAX3 31036859
    127154 6iwd:B (1.8) BS01 ZN ? GO:0003677 ... P06788 31323018
    127155 6iwi:A (2.155) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 31021628
    127156 6iwk:A (1.501) BS01 CA 3.2.1.60 GO:0004556 ... P22963 31751711
    127157 6iwk:A (1.501) BS02 CA 3.2.1.60 GO:0004556 ... P22963 31751711
    127158 6iwq:A (2.95) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127159 6iwq:B (2.95) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127160 6iwq:C (2.95) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127161 6iwq:D (2.95) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127162 6iwq:E (2.95) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127163 6iwq:F (2.95) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127164 6iwr:A (2.604) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127165 6iwr:B (2.604) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127166 6iwr:C (2.604) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127167 6iwr:D (2.604) BS02 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127168 6iwr:E (2.604) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127169 6iwr:F (2.604) BS01 MN 2.4.1.41 GO:0000139 ... Q86SF2 30685086
    127170 6ixt:A (1.78) BS02 MG 1.1.1.41 GO:0004450 ... A0A096P8D3 33957092
    127171 6ixw:A (3.253) BS02 MG N/A N/A N/A 31253774
    127172 6ixx:A (1.999) BS01 CA ? GO:0004222 ... D0VMS8 N/A
    127173 6ixx:A (1.999) BS02 CA ? GO:0004222 ... D0VMS8 N/A
    127174 6ixx:A (1.999) BS03 CA ? GO:0004222 ... D0VMS8 N/A
    127175 6ixx:A (1.999) BS04 CA ? GO:0004222 ... D0VMS8 N/A
    127176 6ixx:A (1.999) BS05 CA ? GO:0004222 ... D0VMS8 N/A
    127177 6ixx:A (1.999) BS06 CA ? GO:0004222 ... D0VMS8 N/A
    127178 6ixx:A (1.999) BS07 CA ? GO:0004222 ... D0VMS8 N/A
    127179 6ixx:A (1.999) BS08 CA ? GO:0004222 ... D0VMS8 N/A
    127180 6ixx:A (1.999) BS09 ZN ? GO:0004222 ... D0VMS8 N/A
    127181 6iy8:A (3.42) BS02 ZN ? GO:0005524 ... Q7WSM9 32483114
    127182 6iy8:B (3.42) BS01 ZN ? GO:0005524 ... Q7WSM9 32483114
    127183 6iy8:C (3.42) BS02 ZN ? GO:0005524 ... Q7WSM9 32483114
    127184 6iy8:D (3.42) BS02 ZN ? GO:0005524 ... Q7WSM9 32483114
    127185 6iyb:A (2.091) BS01 MG 3.6.5.2 GO:0000045 ... P51149 30721249
    127186 6iyb:C (2.091) BS01 MG 3.6.5.2 GO:0000045 ... P51149 30721249
    127187 6iyg:A (1.5) BS05 CA 3.2.1.60 GO:0004556 ... P22963 N/A
    127188 6iyg:A (1.5) BS06 CA 3.2.1.60 GO:0004556 ... P22963 N/A
    127189 6iym:A (2.1) BS01 MG N/A GO:0003824 ... N/A 30630595
    127190 6iym:B (2.1) BS01 MG N/A GO:0003824 ... N/A 30630595
    127191 6iz2:A (2.069) BS01 ZN ? GO:0046872 ... Q9RY97 30961930
    127192 6iz2:A (2.069) BS02 ZN ? GO:0046872 ... Q9RY97 30961930
    127193 6iz2:B (2.069) BS01 ZN ? GO:0046872 ... Q9RY97 30961930
    127194 6iz2:B (2.069) BS02 ZN ? GO:0046872 ... Q9RY97 30961930
    127195 6izr:1 (4.7) BS02 MG N/A N/A N/A 31253774
    127196 6izr:2 (4.7) BS02 MG N/A N/A N/A 31253774
    127197 6izr:A (4.7) BS02 MG N/A N/A N/A 31253774
    127198 6izr:B (4.7) BS02 MG N/A N/A N/A 31253774
    127199 6izr:D (4.7) BS02 MG N/A N/A N/A 31253774
    127200 6izr:H (4.7) BS02 MG N/A N/A N/A 31253774
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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