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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    126801 6ipe:A (1.7) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126802 6ipe:A (1.7) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126803 6ipf:A (1.77) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126804 6ipf:A (1.77) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126805 6ipg:A (1.62) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126806 6ipg:A (1.62) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126807 6iph:A (1.65) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126808 6iph:A (1.65) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126809 6ipi:A (1.8) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126810 6ipi:A (1.8) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126811 6ipj:A (1.98) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126812 6ipj:A (1.98) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126813 6ipk:A (2.15) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126814 6ipk:A (2.15) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126815 6ipl:A (1.64) BS01 MG 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126816 6ipm:A (1.72) BS02 MG 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126817 6ipn:A (1.6) BS01 MG 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126818 6ipo:A (2.998) BS01 MG 1.16.3.1 GO:0004322 ... P02794 30770832
    126819 6ipo:B (2.998) BS01 MG 1.16.3.1 GO:0004322 ... P02794 30770832
    126820 6ipp:A (2.699) BS01 FE 1.16.3.1 GO:0004322 ... P02794 30770832
    126821 6ipq:A (3.103) BS01 MG 1.16.3.1 GO:0004322 ... P02794 30770832
    126822 6iq1:A (2.485) BS01 ZN 3.-.-.- GO:0000166 ... Q59WG0 30622225
    126823 6iq1:B (2.485) BS01 ZN 3.-.-.- GO:0000166 ... Q59WG0 30622225
    126824 6iq1:C (2.485) BS01 ZN 3.-.-.- GO:0000166 ... Q59WG0 30622225
    126825 6iq1:D (2.485) BS01 ZN 3.-.-.- GO:0000166 ... Q59WG0 30622225
    126826 6iqd:A (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126827 6iqd:A (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126828 6iqd:B (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126829 6iqd:B (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126830 6iqd:C (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126831 6iqd:C (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126832 6iqd:D (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126833 6iqd:D (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126834 6iqd:E (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126835 6iqd:E (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126836 6iqd:F (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126837 6iqd:F (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126838 6iqd:G (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126839 6iqd:G (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126840 6iqd:H (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126841 6iqd:H (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    126842 6iqq:C (2.8) BS01 CA 3.4.21.102 GO:0006508 ... P23865 31387902
    126843 6iqq:D (2.8) BS01 CA 3.4.21.102 GO:0006508 ... P23865 31387902
    126844 6iqx:A (1.432) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126845 6iqx:A (1.432) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126846 6iqx:A (1.432) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126847 6iqx:A (1.432) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126848 6iqx:B (1.432) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126849 6iqx:B (1.432) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126850 6iqx:B (1.432) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126851 6iqx:B (1.432) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126852 6iqy:A (1.6) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126853 6iqy:A (1.6) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126854 6iqy:A (1.6) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126855 6iqy:A (1.6) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126856 6iqy:B (1.6) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126857 6iqy:B (1.6) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126858 6iqy:B (1.6) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126859 6iqy:B (1.6) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126860 6iqz:A (1.46) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126861 6iqz:A (1.46) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126862 6iqz:A (1.46) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126863 6iqz:A (1.46) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    126864 6ir0:A (-1.00) BS01 ZN 2.3.2.27 GO:0007219 ... Q86UW9 30927328
    126865 6ir0:A (-1.00) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 30927328
    126866 6ir9:A (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    126867 6ir9:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    126868 6ir9:A (3.8) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    126869 6ir9:B (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    126870 6ir9:I (3.8) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    126871 6ir9:I (3.8) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    126872 6ir9:J (3.8) BS01 ZN ? GO:0000428 ... C4R009 30733384
    126873 6ir9:L (3.8) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    126874 6ir9:M (3.8) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    126875 6ir9:V (3.8) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    126876 6irk:A (1.75) BS01 MG 5.3.1.5 GO:0000287 ... P24300 31061502
    126877 6irk:A (1.75) BS02 MG 5.3.1.5 GO:0000287 ... P24300 31061502
    126878 6is1:A (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    126879 6is1:B (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    126880 6is1:C (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    126881 6is1:D (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    126882 6is1:E (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    126883 6is1:F (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    126884 6is1:G (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    126885 6is1:H (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    126886 6is2:A (1.591) BS01 MG ? GO:0000160 ... Q2YY03 31598698
    126887 6is2:B (1.591) BS01 MG ? GO:0000160 ... Q2YY03 31598698
    126888 6is2:C (1.591) BS01 MG ? GO:0000160 ... Q2YY03 31598698
    126889 6is2:D (1.591) BS01 MG ? GO:0000160 ... Q2YY03 31598698
    126890 6is3:C (1.549) BS01 CA ? GO:0000160 ... Q2YY03 31598698
    126891 6is7:A (2.8) BS05 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126892 6is7:A (2.8) BS06 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126893 6is7:B (2.8) BS04 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126894 6is7:B (2.8) BS05 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126895 6is7:B (2.8) BS06 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126896 6is8:B (1.68) BS03 MG ? GO:0008821 ... B4FCI7 31611704
    126897 6isd:A (2.4) BS02 CO 1.13.11.27 GO:0003868 ... P93836 30632699
    126898 6isd:B (2.4) BS02 CO 1.13.11.27 GO:0003868 ... P93836 30632699
    126899 6isf:A (2.8) BS03 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126900 6isf:B (2.8) BS03 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126901 6isf:B (2.8) BS04 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126902 6isf:B (2.8) BS05 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126903 6ish:A (3.3) BS03 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126904 6isi:A (3.2) BS03 CA 2.7.7.7 GO:0000166 ... Q56366 31240262
    126905 6iso:A (2.95) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 25369635
    126906 6iso:B (2.95) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 25369635
    126907 6iso:E (2.95) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 25369635
    126908 6iso:G (2.95) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 25369635
    126909 6iso:I (2.95) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 25369635
    126910 6iss:A (1.53) BS02 CA 1.11.1.14 GO:0000302 ... P06181 N/A
    126911 6iss:A (1.53) BS03 CA 1.11.1.14 GO:0000302 ... P06181 N/A
    126912 6iss:G (1.53) BS02 CA 1.11.1.14 GO:0000302 ... P06181 N/A
    126913 6iss:G (1.53) BS03 CA 1.11.1.14 GO:0000302 ... P06181 N/A
    126914 6ist:C (1.75) BS01 CA ? GO:0046872 ... S5MRN1 32176738
    126915 6isv:A (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... M5A8V4 31482280
    126916 6isv:A (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... M5A8V4 31482280
    126917 6isv:B (2.5) BS02 ZN 1.1.1.1 GO:0000166 ... M5A8V4 31482280
    126918 6isv:B (2.5) BS03 ZN 1.1.1.1 GO:0000166 ... M5A8V4 31482280
    126919 6ito:A (2.55) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 31381898
    126920 6ito:B (2.55) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 31381898
    126921 6ito:C (2.55) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 31381898
    126922 6ito:D (2.55) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 31381898
    126923 6iu3:A (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126924 6iu3:A (2.7) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126925 6iu3:A (2.7) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126926 6iu4:A (3.5) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126927 6iu4:A (3.5) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126928 6iu4:A (3.5) BS03 CO N/A GO:0005384 ... N/A 30742036
    126929 6iu5:A (2.25) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126930 6iu5:A (2.25) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126931 6iu5:A (2.25) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126932 6iu5:B (2.25) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126933 6iu5:B (2.25) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126934 6iu5:B (2.25) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126935 6iu5:B (2.25) BS04 ZN N/A GO:0005384 ... N/A 30742036
    126936 6iu5:C (2.25) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126937 6iu5:C (2.25) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126938 6iu5:C (2.25) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126939 6iu5:C (2.25) BS04 ZN N/A GO:0005384 ... N/A 30742036
    126940 6iu5:D (2.25) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126941 6iu5:D (2.25) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126942 6iu5:D (2.25) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126943 6iu5:E (2.25) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126944 6iu5:E (2.25) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126945 6iu5:E (2.25) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126946 6iu5:F (2.25) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126947 6iu5:F (2.25) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126948 6iu5:F (2.25) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126949 6iu5:H (2.25) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126950 6iu5:H (2.25) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126951 6iu5:H (2.25) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126952 6iu5:I (2.25) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126953 6iu5:I (2.25) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126954 6iu5:I (2.25) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126955 6iu5:I (2.25) BS04 ZN N/A GO:0005384 ... N/A 30742036
    126956 6iu6:A (2.9) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126957 6iu6:B (2.9) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126958 6iu6:B (2.9) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126959 6iu6:C (2.9) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126960 6iu6:C (2.9) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126961 6iu6:D (2.9) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126962 6iu6:E (2.9) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126963 6iu6:F (2.9) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126964 6iu6:H (2.9) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126965 6iu6:I (2.9) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126966 6iu6:I (2.9) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126967 6iu8:A (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126968 6iu8:A (2.7) BS02 CO N/A GO:0005384 ... N/A 30742036
    126969 6iu8:A (2.7) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126970 6iu8:A (2.7) BS04 CO N/A GO:0005384 ... N/A 30742036
    126971 6iu8:B (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126972 6iu8:B (2.7) BS02 CO N/A GO:0005384 ... N/A 30742036
    126973 6iu8:B (2.7) BS03 CO N/A GO:0005384 ... N/A 30742036
    126974 6iu8:B (2.7) BS04 ZN N/A GO:0005384 ... N/A 30742036
    126975 6iu8:B (2.7) BS05 CO N/A GO:0005384 ... N/A 30742036
    126976 6iu8:C (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126977 6iu8:C (2.7) BS02 ZN N/A GO:0005384 ... N/A 30742036
    126978 6iu8:C (2.7) BS03 CO N/A GO:0005384 ... N/A 30742036
    126979 6iu8:C (2.7) BS04 CO N/A GO:0005384 ... N/A 30742036
    126980 6iu8:C (2.7) BS05 CO N/A GO:0005384 ... N/A 30742036
    126981 6iu8:D (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126982 6iu8:D (2.7) BS02 CO N/A GO:0005384 ... N/A 30742036
    126983 6iu8:D (2.7) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126984 6iu8:D (2.7) BS04 CO N/A GO:0005384 ... N/A 30742036
    126985 6iu8:E (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126986 6iu8:E (2.7) BS02 CO N/A GO:0005384 ... N/A 30742036
    126987 6iu8:E (2.7) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126988 6iu8:E (2.7) BS04 CO N/A GO:0005384 ... N/A 30742036
    126989 6iu8:F (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126990 6iu8:F (2.7) BS02 CO N/A GO:0005384 ... N/A 30742036
    126991 6iu8:F (2.7) BS03 CO N/A GO:0005384 ... N/A 30742036
    126992 6iu8:F (2.7) BS04 CO N/A GO:0005384 ... N/A 30742036
    126993 6iu8:H (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126994 6iu8:H (2.7) BS02 CO N/A GO:0005384 ... N/A 30742036
    126995 6iu8:H (2.7) BS03 ZN N/A GO:0005384 ... N/A 30742036
    126996 6iu8:H (2.7) BS04 CO N/A GO:0005384 ... N/A 30742036
    126997 6iu8:I (2.7) BS01 ZN N/A GO:0005384 ... N/A 30742036
    126998 6iu8:I (2.7) BS02 CO N/A GO:0005384 ... N/A 30742036
    126999 6iu8:I (2.7) BS03 CO N/A GO:0005384 ... N/A 30742036
    127000 6iu8:I (2.7) BS04 ZN N/A GO:0005384 ... N/A 30742036
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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