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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    126601 6ij2:A (1.7) BS05 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126602 6ij2:B (1.7) BS02 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126603 6ij2:B (1.7) BS03 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126604 6ij2:B (1.7) BS04 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126605 6ij2:B (1.7) BS05 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126606 6ij2:C (1.7) BS02 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126607 6ij2:C (1.7) BS03 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126608 6ij2:C (1.7) BS04 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126609 6ij2:C (1.7) BS05 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126610 6ij2:D (1.7) BS02 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126611 6ij2:D (1.7) BS03 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126612 6ij2:D (1.7) BS04 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126613 6ij2:D (1.7) BS05 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126614 6ijh:A (2.6) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30888810
    126615 6ijh:B (2.6) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30888810
    126616 6iji:A (2.7) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30888810
    126617 6iji:B (2.7) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30888810
    126618 6ijl:A (2.351) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 31223458
    126619 6ijl:A (2.351) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 31223458
    126620 6ijl:A (2.351) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 31223458
    126621 6ijm:A (2.016) BS01 ZN 3.5.4.- GO:0005737 ... Q8LPL7 30721978
    126622 6ijp:A (1.85) BS01 ZN 3.5.4.- GO:0005737 ... Q8LPL7 30721978
    126623 6ik4:A (1.9) BS01 ZN ? GO:0004222 ... E7D102 31941905
    126624 6ik9:A (2.435) BS03 MG 3.1.26.13 GO:0003676 ... D3XFN7 30648556
    126625 6ik9:C (2.435) BS02 MG 3.1.26.13 GO:0003676 ... D3XFN7 30648556
    126626 6ika:A (2.598) BS03 MG 3.1.26.13 GO:0003676 ... D3XFN7 30648556
    126627 6ika:C (2.598) BS03 MG 3.1.26.13 GO:0003676 ... D3XFN7 30648556
    126628 6il9:A (1.72005) BS01 ZN N/A GO:0016853 ... N/A N/A
    126629 6ila:A (2.69) BS01 ZN N/A GO:0016853 ... N/A N/A
    126630 6ilb:A (2.51) BS01 MN N/A GO:0016853 ... N/A N/A
    126631 6ilb:D (2.51) BS01 MN N/A GO:0016853 ... N/A N/A
    126632 6ild:A (1.882) BS02 MG 2.7.7.-
    6.1.1.6
    GO:0000166 ... Q15046 30733335
    126633 6ild:B (1.882) BS02 MG 2.7.7.-
    6.1.1.6
    GO:0000166 ... Q15046 30733335
    126634 6im0:A (2.6) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126635 6im0:A (2.6) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126636 6im0:A (2.6) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126637 6im0:A (2.6) BS05 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126638 6im0:A (2.6) BS06 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126639 6im0:B (2.6) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126640 6im0:B (2.6) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126641 6im0:B (2.6) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126642 6im0:B (2.6) BS05 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126643 6im0:B (2.6) BS06 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126644 6im0:C (2.6) BS01 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126645 6im0:C (2.6) BS02 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126646 6im0:C (2.6) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126647 6im0:C (2.6) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126648 6im0:C (2.6) BS05 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126649 6im0:D (2.6) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126650 6im0:D (2.6) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126651 6im0:D (2.6) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126652 6im0:D (2.6) BS05 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126653 6im0:E (2.6) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126654 6im0:F (2.6) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126655 6im0:F (2.6) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126656 6im0:F (2.6) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126657 6im1:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126658 6im1:A (2.0) BS02 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126659 6im1:A (2.0) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126660 6im1:A (2.0) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126661 6im1:B (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126662 6im1:B (2.0) BS02 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126663 6im1:B (2.0) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126664 6im1:B (2.0) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126665 6im1:C (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126666 6im1:D (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126667 6im1:D (2.0) BS02 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126668 6im1:D (2.0) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126669 6im1:E (2.0) BS01 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126670 6im1:E (2.0) BS02 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126671 6im1:E (2.0) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126672 6im1:E (2.0) BS04 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126673 6im1:F (2.0) BS01 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126674 6im1:F (2.0) BS02 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126675 6im1:F (2.0) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126676 6im1:F (2.0) BS04 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126677 6im3:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126678 6im3:A (2.0) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126679 6im3:A (2.0) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126680 6im3:A (2.0) BS05 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126681 6im3:A (2.0) BS06 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126682 6im3:B (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126683 6im3:B (2.0) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126684 6im3:B (2.0) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126685 6im3:B (2.0) BS05 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126686 6im3:B (2.0) BS06 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126687 6im3:C (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126688 6im3:D (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126689 6im3:D (2.0) BS03 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126690 6im3:D (2.0) BS04 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126691 6im3:E (2.0) BS01 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126692 6im3:E (2.0) BS02 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126693 6im3:E (2.0) BS03 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126694 6im3:F (2.0) BS01 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126695 6im3:F (2.0) BS02 CA 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126696 6im3:F (2.0) BS03 ZN 4.2.1.1 GO:0004089 ... C0QRB5 31250619
    126697 6im6:A (1.702) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126698 6im6:A (1.702) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 31099559
    126699 6im6:A (1.702) BS03 MG 3.1.4.53 GO:0004114 ... Q08499 31099559
    126700 6im6:B (1.702) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126701 6im7:A (1.97) BS01 CA 1.16.3.4 GO:0004322 ... P36649 30770473
    126702 6imb:A (1.549) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126703 6imb:B (1.549) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126704 6imc:A (2.51) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... P0CB42 32051560
    126705 6imc:B (2.51) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... P0CB42 32051560
    126706 6imc:C (2.51) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... P0CB42 32051560
    126707 6imc:D (2.51) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... P0CB42 32051560
    126708 6imd:A (1.499) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126709 6imd:A (1.499) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 31099559
    126710 6imd:B (1.499) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126711 6ime:A (1.55) BS02 MG 2.5.1.86
    2.5.1.87
    GO:0000287 ... P9WFF7 30950820
    126712 6imi:A (1.46) BS01 MG 3.1.4.53 GO:0004114 ... Q08499 31099559
    126713 6imi:A (1.46) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126714 6imi:B (1.46) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126715 6imo:A (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126716 6imo:A (1.55) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 31099559
    126717 6imo:B (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126718 6imq:A (2.06) BS01 ZN 2.3.2.- GO:0008270 ... P29590 31439836
    126719 6imq:A (2.06) BS02 ZN 2.3.2.- GO:0008270 ... P29590 31439836
    126720 6imq:B (2.06) BS01 ZN 2.3.2.- GO:0008270 ... P29590 31439836
    126721 6imq:B (2.06) BS02 ZN 2.3.2.- GO:0008270 ... P29590 31439836
    126722 6imq:C (2.06) BS01 ZN 2.3.2.- GO:0008270 ... P29590 31439836
    126723 6imq:C (2.06) BS02 ZN 2.3.2.- GO:0008270 ... P29590 31439836
    126724 6imq:D (2.06) BS01 ZN 2.3.2.- GO:0008270 ... P29590 31439836
    126725 6imq:D (2.06) BS02 ZN 2.3.2.- GO:0008270 ... P29590 31439836
    126726 6imr:A (1.503) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126727 6imr:B (1.503) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126728 6imt:A (1.483) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126729 6imt:B (1.483) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126730 6imz:A (2.1) BS01 ZN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 N/A
    126731 6imz:A (2.1) BS02 ZN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 N/A
    126732 6imz:A (2.1) BS05 ZN 3.6.1.-
    3.6.1.56
    GO:0001669 ... P36639 N/A
    126733 6inb:A (1.8) BS01 ZN N/A GO:0045151 ... N/A 30580999
    126734 6inc:A (1.604) BS01 ZN N/A GO:0045151 ... N/A 30580999
    126735 6ind:A (1.872) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126736 6ind:B (1.872) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126737 6ine:A (2.6) BS01 ZN 2.1.1.359
    2.1.1.367
    GO:0005634 ... Q9NR48 30827843
    126738 6ine:A (2.6) BS02 ZN 2.1.1.359
    2.1.1.367
    GO:0005634 ... Q9NR48 30827843
    126739 6ine:A (2.6) BS03 ZN 2.1.1.359
    2.1.1.367
    GO:0005634 ... Q9NR48 30827843
    126740 6ink:A (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126741 6ink:B (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126742 6inm:A (1.999) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126743 6inm:B (1.999) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31099559
    126744 6inq:A (6.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    126745 6inq:A (6.9) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    126746 6inq:A (6.9) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    126747 6inq:B (6.9) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    126748 6inq:C (6.9) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    126749 6inq:I (6.9) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    126750 6inq:I (6.9) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    126751 6inq:J (6.9) BS01 ZN ? GO:0000428 ... C4R009 30287617
    126752 6int:A (1.942) BS01 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126753 6int:A (1.942) BS02 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126754 6int:A (1.942) BS03 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126755 6int:B (1.942) BS01 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126756 6int:B (1.942) BS02 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126757 6int:B (1.942) BS03 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126758 6int:C (1.942) BS01 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126759 6int:C (1.942) BS02 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126760 6int:C (1.942) BS03 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126761 6int:D (1.942) BS01 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126762 6int:D (1.942) BS02 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126763 6int:D (1.942) BS03 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126764 6int:E (1.942) BS01 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126765 6int:E (1.942) BS02 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126766 6int:E (1.942) BS03 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126767 6int:F (1.942) BS01 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126768 6int:F (1.942) BS02 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126769 6int:F (1.942) BS03 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126770 6int:G (1.942) BS01 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126771 6int:G (1.942) BS02 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126772 6int:G (1.942) BS03 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126773 6int:H (1.942) BS01 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126774 6int:H (1.942) BS02 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126775 6int:H (1.942) BS03 CA 5.3.1.5 GO:0000287 ... A0A4V8H014 30602271
    126776 6iny:A (1.997) BS02 MG 2.7.7.108 GO:0000287 ... A0A024L327 N/A
    126777 6inz:A (2.289) BS06 CA ? GO:0046872 ... D1AWE0 31204616
    126778 6io6:A (2.64) BS01 AG 1.2.1.12 GO:0000166 ... P0A9B2 31588287
    126779 6iop:A (2.3) BS01 CA ? N/A Q9KQ43 30745373
    126780 6iop:B (2.3) BS02 CA ? N/A Q9KQ43 30745373
    126781 6ioq:A (2.143) BS02 CA ? N/A Q9KQ43 30745373
    126782 6ior:A (2.5) BS02 CA ? N/A Q9KQ43 30745373
    126783 6ior:B (2.5) BS02 CA ? N/A Q9KQ43 30745373
    126784 6ior:C (2.5) BS02 CA ? N/A Q9KQ43 30745373
    126785 6ior:D (2.5) BS02 CA ? N/A Q9KQ43 30745373
    126786 6ios:A (2.35) BS02 CA ? N/A Q9KQ43 30745373
    126787 6iot:A (2.7) BS02 CA ? N/A Q9KQ43 30745373
    126788 6iot:B (2.7) BS02 CA ? N/A Q9KQ43 30745373
    126789 6iot:C (2.7) BS02 CA ? N/A Q9KQ43 30745373
    126790 6iot:D (2.7) BS02 CA ? N/A Q9KQ43 30745373
    126791 6iou:A (2.1) BS02 CA ? N/A Q9KQ43 30745373
    126792 6iou:B (2.1) BS02 CA ? N/A Q9KQ43 30745373
    126793 6ioz:A (3.1) BS01 CA 3.1.6.13 GO:0004423 ... P22304 N/A
    126794 6ip0:A (2.4) BS02 ZN 1.14.11.- N/A F4KIX0 30899015
    126795 6ip0:A (2.4) BS03 ZN 1.14.11.- N/A F4KIX0 30899015
    126796 6ip4:A (2.6) BS02 ZN 1.14.11.- N/A F4KIX0 30899015
    126797 6ip4:A (2.6) BS03 ZN 1.14.11.- N/A F4KIX0 30899015
    126798 6ip9:A (1.85) BS01 LA ? GO:0003796 ... P00711 30741951
    126799 6ipd:A (1.7) BS04 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    126800 6ipd:A (1.7) BS05 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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