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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    126401 6ibf:D (2.31) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    126402 6ibh:A (1.82) BS01 CU ? N/A A0A4P9I8G4 31932718
    126403 6ibh:B (1.82) BS01 CU ? N/A A0A4P9I8G4 31932718
    126404 6ibi:A (2.08) BS01 CU ? N/A A0A4P9I8G4 31932718
    126405 6ibi:B (2.08) BS01 CU ? N/A A0A4P9I8G4 31932718
    126406 6ibi:C (2.08) BS01 CU ? N/A A0A4P9I8G4 31932718
    126407 6ibi:D (2.08) BS01 CU ? N/A A0A4P9I8G4 31932718
    126408 6ibj:A (2.1) BS01 CU ? N/A A0A4P9I8G4 31932718
    126409 6ibs:A (1.37) BS01 ZN 3.5.2.6 N/A C7C422 30996812
    126410 6ibs:A (1.37) BS02 ZN 3.5.2.6 N/A C7C422 30996812
    126411 6ibs:A (1.37) BS04 CA 3.5.2.6 N/A C7C422 30996812
    126412 6ibs:A (1.37) BS05 CA 3.5.2.6 N/A C7C422 30996812
    126413 6ibs:B (1.37) BS01 ZN 3.5.2.6 N/A C7C422 30996812
    126414 6ibs:B (1.37) BS02 ZN 3.5.2.6 N/A C7C422 30996812
    126415 6ibs:B (1.37) BS04 CA 3.5.2.6 N/A C7C422 30996812
    126416 6ibs:B (1.37) BS05 CA 3.5.2.6 N/A C7C422 30996812
    126417 6ibv:A (1.4) BS02 ZN 3.5.2.6 N/A C7C422 30996812
    126418 6ibv:A (1.4) BS03 ZN 3.5.2.6 N/A C7C422 30996812
    126419 6ibv:A (1.4) BS04 CA 3.5.2.6 N/A C7C422 30996812
    126420 6ibv:A (1.4) BS05 CA 3.5.2.6 N/A C7C422 30996812
    126421 6ibv:B (1.4) BS01 CA 3.5.2.6 N/A C7C422 30996812
    126422 6ibv:B (1.4) BS03 ZN 3.5.2.6 N/A C7C422 30996812
    126423 6ibv:B (1.4) BS04 ZN 3.5.2.6 N/A C7C422 30996812
    126424 6ic2:A (1.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 31038135
    126425 6ica:A (2.195) BS01 ZN ? GO:0004177 ... Q5ZRR6 N/A
    126426 6ica:A (2.195) BS02 ZN ? GO:0004177 ... Q5ZRR6 N/A
    126427 6ica:B (2.195) BS01 ZN ? GO:0004177 ... Q5ZRR6 N/A
    126428 6ica:B (2.195) BS02 ZN ? GO:0004177 ... Q5ZRR6 N/A
    126429 6ica:C (2.195) BS01 ZN ? GO:0004177 ... Q5ZRR6 N/A
    126430 6ica:C (2.195) BS02 ZN ? GO:0004177 ... Q5ZRR6 N/A
    126431 6ick:A (1.952) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126432 6ick:B (1.952) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126433 6ick:C (1.952) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126434 6icl:A (2.1) BS02 FE 1.14.13.179 GO:0009820 ... H9N290 31412262
    126435 6icm:A (2.961) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126436 6icm:B (2.961) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126437 6icm:C (2.961) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126438 6icn:A (1.65) BS02 CO 1.14.13.178 GO:0005737 ... H9N289 31412262
    126439 6icn:B (1.65) BS02 CO 1.14.13.178 GO:0005737 ... H9N289 31412262
    126440 6icn:C (1.65) BS02 CO 1.14.13.178 GO:0005737 ... H9N289 31412262
    126441 6ico:A (1.85) BS02 CO 1.14.13.178 GO:0005737 ... H9N289 31412262
    126442 6ico:B (1.85) BS02 CO 1.14.13.178 GO:0005737 ... H9N289 31412262
    126443 6ico:C (1.85) BS02 CO 1.14.13.178 GO:0005737 ... H9N289 31412262
    126444 6icp:A (2.2) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126445 6icp:B (2.2) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126446 6icp:C (2.2) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126447 6icq:A (1.9) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126448 6icq:B (1.9) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126449 6icq:C (1.9) BS02 FE 1.14.13.178 GO:0005737 ... H9N289 31412262
    126450 6icz:N (3.0) BS02 ZN ? GO:0000398 ... P41223 30728453
    126451 6icz:N (3.0) BS03 ZN ? GO:0000398 ... P41223 30728453
    126452 6icz:N (3.0) BS04 ZN ? GO:0000398 ... P41223 30728453
    126453 6icz:O (3.0) BS03 ZN ? GO:0000398 ... Q9NW64 30728453
    126454 6icz:O (3.0) BS04 ZN ? GO:0000398 ... Q9NW64 30728453
    126455 6icz:O (3.0) BS05 ZN ? GO:0000398 ... Q9NW64 30728453
    126456 6icz:Z (3.0) BS02 ZN ? GO:0000375 ... O95391 30728453
    126457 6id0:N (2.9) BS03 ZN ? GO:0000398 ... P41223 30728453
    126458 6id0:N (2.9) BS04 ZN ? GO:0000398 ... P41223 30728453
    126459 6id0:O (2.9) BS03 ZN ? GO:0000398 ... Q9NW64 30728453
    126460 6id0:O (2.9) BS04 ZN ? GO:0000398 ... Q9NW64 30728453
    126461 6id0:O (2.9) BS05 ZN ? GO:0000398 ... Q9NW64 30728453
    126462 6id0:U (2.9) BS02 ZN ? GO:0000398 ... Q2TBE0 30728453
    126463 6id1:N (2.86) BS02 ZN ? GO:0000398 ... P41223 30728453
    126464 6id1:N (2.86) BS03 ZN ? GO:0000398 ... P41223 30728453
    126465 6id1:N (2.86) BS04 ZN ? GO:0000398 ... P41223 30728453
    126466 6id1:O (2.86) BS03 ZN ? GO:0000398 ... Q9NW64 30728453
    126467 6id1:O (2.86) BS04 ZN ? GO:0000398 ... Q9NW64 30728453
    126468 6id1:O (2.86) BS05 ZN ? GO:0000398 ... Q9NW64 30728453
    126469 6id1:U (2.86) BS03 ZN ? GO:0000398 ... Q2TBE0 30728453
    126470 6idn:A (1.5) BS01 CA 3.2.1.14 GO:0004553 ... A0A493R6X2 31790908
    126471 6idy:A (2.15) BS01 CA ? GO:0003674 ... Q4WG73 N/A
    126472 6idy:B (2.15) BS01 CA ? GO:0003674 ... Q4WG73 N/A
    126473 6idy:C (2.15) BS01 CA ? GO:0003674 ... Q4WG73 N/A
    126474 6ie0:B (2.976) BS01 ZN 1.1.1.4 GO:0000721 ... O34788 N/A
    126475 6ie0:C (2.976) BS01 ZN 1.1.1.4 GO:0000721 ... O34788 N/A
    126476 6ie0:D (2.976) BS01 ZN 1.1.1.4 GO:0000721 ... O34788 N/A
    126477 6ie2:A (2.8) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126478 6ie2:B (2.8) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126479 6ie2:C (2.8) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126480 6ie2:D (2.8) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126481 6ie2:E (2.8) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126482 6ie2:F (2.8) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126483 6ie2:G (2.8) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126484 6ie2:H (2.8) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126485 6ie3:A (1.97) BS01 MN 1.14.11.-
    1.14.11.33
    1.14.11.51
    4.2.99.18
    GO:0000049 ... Q13686 32051559
    126486 6iej:A (2.206) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126487 6iej:A (2.206) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126488 6iej:A (2.206) BS03 MG 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126489 6iej:B (2.206) BS01 MG 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126490 6iej:B (2.206) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126491 6iej:B (2.206) BS03 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126492 6iej:B (2.206) BS04 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126493 6iej:C (2.206) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126494 6iej:C (2.206) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126495 6iej:C (2.206) BS03 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126496 6iej:C (2.206) BS04 MG 3.1.1.4
    3.1.1.5
    GO:0005509 ... P49147 31050338
    126497 6iet:A (2.101) BS01 ZN ? N/A O15016 31537782
    126498 6iet:A (2.101) BS02 ZN ? N/A O15016 31537782
    126499 6ieu:A (1.787) BS02 ZN ? N/A O15016 31537782
    126500 6ieu:A (1.787) BS03 ZN ? N/A O15016 31537782
    126501 6if2:B (2.4) BS01 MG ? GO:0000281 ... Q15286 30905672
    126502 6if3:B (1.5) BS02 MG ? GO:0000281 ... Q15286 30905672
    126503 6if7:A (2.2) BS01 CU ? GO:0046872 ... W5QLL4 30903269
    126504 6ifc:A (1.99) BS02 CA 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    126505 6ifc:C (1.99) BS02 CA 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    126506 6ifc:E (1.99) BS02 CA 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    126507 6ifc:G (1.99) BS02 CA 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    126508 6iff:A (1.83) BS01 ZN 3.4.11.2 GO:0006508 ... Q9RVZ5 31923495
    126509 6iff:B (1.83) BS01 ZN 3.4.11.2 GO:0006508 ... Q9RVZ5 31923495
    126510 6ifg:A (1.9) BS02 ZN 3.4.11.2 GO:0006508 ... Q9RVZ5 31351924
    126511 6ifg:A (1.9) BS03 ZN 3.4.11.2 GO:0006508 ... Q9RVZ5 31351924
    126512 6ifg:B (1.9) BS02 ZN 3.4.11.2 GO:0006508 ... Q9RVZ5 31351924
    126513 6ifg:B (1.9) BS03 ZN 3.4.11.2 GO:0006508 ... Q9RVZ5 31351924
    126514 6ifh:A (1.8) BS01 MG ? GO:0000160 ... A0A4V8GZZ1 N/A
    126515 6ifk:A (3.2) BS05 MG N/A N/A N/A 30503210
    126516 6ifk:A (3.2) BS06 MG N/A N/A N/A 30503210
    126517 6ifk:A (3.2) BS07 ZN N/A N/A N/A 30503210
    126518 6ifn:A (2.9) BS02 ZN N/A N/A N/A 30503210
    126519 6ifn:A (2.9) BS03 MN N/A N/A N/A 30503210
    126520 6ifp:A (1.0) BS01 CU ? GO:0005507 ... P19567 N/A
    126521 6ifp:C (1.0) BS01 CU ? GO:0005507 ... P19567 N/A
    126522 6ifq:A (1.95) BS01 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126523 6ifq:B (1.95) BS01 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126524 6ifr:A (3.4) BS04 MG N/A N/A N/A 30503210
    126525 6ifr:A (3.4) BS05 MG N/A N/A N/A 30503210
    126526 6ify:A (3.8) BS03 ZN N/A N/A N/A 30503210
    126527 6ig0:A (3.37) BS03 ZN N/A N/A N/A 30503210
    126528 6ig0:A (3.37) BS06 MG N/A N/A N/A 30503210
    126529 6ig0:A (3.37) BS07 MG N/A N/A N/A 30503210
    126530 6ig1:A (1.97) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    126531 6ig1:A (1.97) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    126532 6ig1:F (1.97) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    126533 6ig1:F (1.97) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    126534 6ig7:A (1.8) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 30792457
    126535 6ig7:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 30792457
    126536 6ig7:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30792457
    126537 6ig7:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30792457
    126538 6ig7:A (1.8) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30792457
    126539 6igj:A (1.501) BS01 MG ? GO:0005515 ... Q9SXZ2 31726375
    126540 6igs:A (2.16) BS01 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    126541 6igs:A (2.16) BS02 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    126542 6igs:B (2.16) BS01 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    126543 6igs:B (2.16) BS02 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    126544 6igs:C (2.16) BS01 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    126545 6igs:C (2.16) BS02 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    126546 6igs:D (2.16) BS01 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    126547 6igs:D (2.16) BS02 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    126548 6ih0:A (1.21) BS02 ZN 3.5.1.108 GO:0006796 ... O67648 N/A
    126549 6ih1:A (1.95) BS02 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126550 6ih1:A (1.95) BS03 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126551 6ih1:B (1.95) BS02 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126552 6ih1:B (1.95) BS03 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126553 6ih1:C (1.95) BS02 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126554 6ih1:C (1.95) BS03 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126555 6ih1:D (1.95) BS02 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126556 6ih1:D (1.95) BS03 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126557 6ih7:A (2.25) BS02 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126558 6ih7:A (2.25) BS03 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126559 6ih7:B (2.25) BS02 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126560 6ih7:B (2.25) BS03 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    126561 6ihl:A (1.573) BS01 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126562 6ihl:A (1.573) BS02 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126563 6ihl:A (1.573) BS03 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126564 6ihr:A (1.348) BS01 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126565 6ihr:A (1.348) BS02 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126566 6ihs:A (1.4) BS01 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126567 6ihs:A (1.4) BS02 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126568 6ihs:A (1.4) BS03 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126569 6iht:A (1.569) BS02 MN 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126570 6iht:A (1.569) BS03 MN 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126571 6iht:A (1.569) BS04 MN 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126572 6iht:A (1.569) BS05 MN 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126573 6ihu:A (1.84) BS01 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126574 6ihu:A (1.84) BS02 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126575 6ihu:A (1.84) BS03 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126576 6ihv:A (1.9) BS01 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126577 6ihv:A (1.9) BS02 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126578 6ihv:A (1.9) BS03 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126579 6ihw:A (1.55) BS01 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126580 6ihw:A (1.55) BS02 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126581 6ihw:A (1.55) BS03 MG 3.1.3.16 GO:0004722 ... Q9RL81 30868877
    126582 6ii6:C (2.1) BS02 MG ? GO:0000139 ... P61204 31427506
    126583 6ii6:D (2.1) BS02 MG ? GO:0000139 ... P61204 31427506
    126584 6ii7:A (2.48) BS03 ZN 3.5.4.31
    3.5.4.4
    GO:0004000 ... Q8IJA9 31002765
    126585 6iie:A (2.142) BS01 CA 2.7.1.107
    2.7.1.93
    GO:0005509 ... P23743 30653270
    126586 6iie:A (2.142) BS02 CA 2.7.1.107
    2.7.1.93
    GO:0005509 ... P23743 30653270
    126587 6iih:A (1.958) BS01 CA 3.2.1.17 GO:0003796 ... P00720
    Q8IYU8
    31397067
    126588 6iih:B (1.958) BS01 CA 3.2.1.17 GO:0003796 ... P00720
    Q8IYU8
    31397067
    126589 6iih:B (1.958) BS02 CA 3.2.1.17 GO:0003796 ... P00720
    Q8IYU8
    31397067
    126590 6iii:A (2.113) BS03 MG 2.7.7.108 GO:0000287 ... P77649 N/A
    126591 6iiu:A (2.5) BS02 ZN ? GO:0004930 ... P00268
    P0ABE7
    P21731
    30510189
    126592 6iiv:A (3.0) BS02 ZN ? GO:0004930 ... P00268
    P0ABE7
    P21731
    30510189
    126593 6iiw:A (1.699) BS02 ZN 2.3.2.27 N/A Q96T88 32144273
    126594 6iiw:A (1.699) BS03 ZN 2.3.2.27 N/A Q96T88 32144273
    126595 6iiw:A (1.699) BS04 ZN 2.3.2.27 N/A Q96T88 32144273
    126596 6iiw:A (1.699) BS05 ZN 2.3.2.27 N/A Q96T88 32144273
    126597 6iiy:A (1.29) BS01 CO ? GO:0016137 ... Q6ZZJ1 30599088
    126598 6ij2:A (1.7) BS02 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126599 6ij2:A (1.7) BS03 CA ? GO:0000166 ... A0A0H3AJ04 31647518
    126600 6ij2:A (1.7) BS04 CA ? GO:0000166 ... A0A0H3AJ04 31647518

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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