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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    126001 6hw7:Y (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126002 6hw7:Z (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126003 6hw8:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    126004 6hw8:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126005 6hw8:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126006 6hw8:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    126007 6hw8:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126008 6hw8:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126009 6hw9:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    126010 6hw9:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126011 6hw9:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    126012 6hw9:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126013 6hw9:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126014 6hwa:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    126015 6hwa:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126016 6hwa:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126017 6hwa:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    126018 6hwa:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    126019 6hwa:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126020 6hwa:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126021 6hwb:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    126022 6hwb:I (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126023 6hwb:K (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126024 6hwb:V (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    126025 6hwb:Y (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126026 6hwb:Z (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126027 6hwc:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    126028 6hwc:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126029 6hwc:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    126030 6hwc:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    126031 6hwc:W (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126032 6hwc:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126033 6hwc:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126034 6hwd:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    126035 6hwd:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126036 6hwd:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126037 6hwd:N (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    126038 6hwd:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    126039 6hwd:W (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126040 6hwd:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126041 6hwd:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126042 6hwe:G (2.3) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    126043 6hwe:I (2.3) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126044 6hwe:K (2.3) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126045 6hwe:N (2.3) BS02 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    126046 6hwe:V (2.3) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    126047 6hwe:W (2.3) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126048 6hwe:Y (2.3) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126049 6hwe:Z (2.3) BS02 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126050 6hwf:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    126051 6hwf:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126052 6hwf:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126053 6hwf:N (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    126054 6hwf:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    126055 6hwf:W (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    126056 6hwf:Y (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126057 6hwf:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    126058 6hwh:L (3.3) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 30518849
    126059 6hwh:L (3.3) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 30518849
    126060 6hwh:P (3.3) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 30518849
    126061 6hwh:P (3.3) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 30518849
    126062 6hwh:Q (3.3) BS03 CU 7.1.1.9 GO:0004129 ... A0R0M4 30518849
    126063 6hwh:V (3.3) BS04 CU 7.1.1.9 GO:0004129 ... A0R0M4 30518849
    126064 6hwj:A (1.979) BS01 MG 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    126065 6hwj:A (1.979) BS02 MG 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    126066 6hwj:B (1.979) BS01 MG 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    126067 6hwj:B (1.979) BS02 MG 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    126068 6hwk:A (2.688) BS01 MG 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    126069 6hwk:C (2.688) BS01 MG 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    126070 6hwk:D (2.688) BS01 MG 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    126071 6hwl:B (2.148) BS02 MG 2.7.1.8 GO:0000287 ... A0A1H7TQR5 31088917
    126072 6hwo:A (1.99) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31378593
    126073 6hwo:B (1.99) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31378593
    126074 6hwo:C (1.99) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31378593
    126075 6hwo:D (1.99) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31378593
    126076 6hwr:A (1.95) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 30719821
    126077 6hwr:A (1.95) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30719821
    126078 6hwr:B (1.95) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 30719821
    126079 6hwr:B (1.95) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30719821
    126080 6hwr:C (1.95) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 30719821
    126081 6hwr:C (1.95) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30719821
    126082 6hwr:D (1.95) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 30719821
    126083 6hwr:D (1.95) BS02 FE 3.1.3.2 GO:0003993 ... P80366 30719821
    126084 6hwz:A (1.64) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 30560259
    126085 6hwz:B (1.64) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 30560259
    126086 6hx2:A (1.597) BS01 CO 1.16.-.- GO:0005737 ... P80725 31433627
    126087 6hx2:B (1.597) BS01 CO 1.16.-.- GO:0005737 ... P80725 31433627
    126088 6hx2:B (1.597) BS02 CO 1.16.-.- GO:0005737 ... P80725 31433627
    126089 6hx2:C (1.597) BS01 CO 1.16.-.- GO:0005737 ... P80725 31433627
    126090 6hx2:D (1.597) BS01 CO 1.16.-.- GO:0005737 ... P80725 31433627
    126091 6hx2:D (1.597) BS02 CO 1.16.-.- GO:0005737 ... P80725 31433627
    126092 6hx2:E (1.597) BS01 CO 1.16.-.- GO:0005737 ... P80725 31433627
    126093 6hx2:F (1.597) BS01 CO 1.16.-.- GO:0005737 ... P80725 31433627
    126094 6hx5:A (1.44) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30560259
    126095 6hx8:A (2.402) BS02 CA 3.6.5.- GO:0000226 ... P81947 30775645
    126096 6hx8:C (2.402) BS02 CA 3.6.5.- GO:0000226 ... P81947 30775645
    126097 6hxb:A (4.0) BS01 CA 7.2.2.10 GO:0000045 ... P11607 30777856
    126098 6hxb:A (4.0) BS02 CA 7.2.2.10 GO:0000045 ... P11607 30777856
    126099 6hxb:A (4.0) BS03 CA 7.2.2.10 GO:0000045 ... P11607 30777856
    126100 6hxd:A (1.119) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32027480
    126101 6hxh:A (3.3) BS01 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126102 6hxh:A (3.3) BS05 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126103 6hxh:B (3.3) BS03 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126104 6hxh:B (3.3) BS06 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126105 6hxh:C (3.3) BS01 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126106 6hxh:C (3.3) BS05 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126107 6hxh:D (3.3) BS02 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126108 6hxh:D (3.3) BS06 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126109 6hxh:E (3.3) BS01 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126110 6hxh:E (3.3) BS05 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126111 6hxh:F (3.3) BS02 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126112 6hxh:F (3.3) BS06 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126113 6hxh:G (3.3) BS01 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126114 6hxh:G (3.3) BS05 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126115 6hxh:H (3.3) BS02 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126116 6hxh:H (3.3) BS06 MG 2.3.3.8 GO:0003824 ... P53396 30944476
    126117 6hxu:A (1.19) BS02 MG ? GO:0000281 ... P62745 31522999
    126118 6hxw:A (2.78) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 31116985
    126119 6hxw:A (2.78) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 31116985
    126120 6hxw:B (2.78) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 31116985
    126121 6hxw:B (2.78) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99    		 GO:0000166 ... P21589 31116985
    126122 6hy3:A (1.3) BS01 MG 3.2.1.81 GO:0004553 ... D7GXG5 30846563
    126123 6hyg:A (2.31) BS01 ZN N/A N/A N/A 30898885
    126124 6hyg:A (2.31) BS02 ZN N/A N/A N/A 30898885
    126125 6hyh:A (2.5) BS01 ZN ? GO:0030246 ... A0QT50 31006617
    126126 6hyh:A (2.5) BS02 ZN ? GO:0030246 ... A0QT50 31006617
    126127 6hyh:A (2.5) BS03 ZN ? GO:0030246 ... A0QT50 31006617
    126128 6hyh:A (2.5) BS04 ZN ? GO:0030246 ... A0QT50 31006617
    126129 6hyh:A (2.5) BS05 ZN ? GO:0030246 ... A0QT50 31006617
    126130 6hyh:A (2.5) BS06 ZN ? GO:0030246 ... A0QT50 31006617
    126131 6hyh:B (2.5) BS01 ZN ? GO:0030246 ... A0QT50 31006617
    126132 6hyh:B (2.5) BS02 ZN ? GO:0030246 ... A0QT50 31006617
    126133 6hyh:B (2.5) BS03 ZN ? GO:0030246 ... A0QT50 31006617
    126134 6hyh:B (2.5) BS04 ZN ? GO:0030246 ... A0QT50 31006617
    126135 6hyj:A (1.929) BS02 CA 3.1.3.3 GO:0000287 ... P78330 31205021
    126136 6hyj:B (1.929) BS02 CA 3.1.3.3 GO:0000287 ... P78330 31205021
    126137 6hys:B (2.6) BS02 MG 3.6.4.13 GO:0000398 ... Q14562 31409651
    126138 6hys:C (2.6) BS02 MG 3.6.4.13 GO:0000398 ... Q14562 31409651
    126139 6hys:D (2.6) BS02 MG 3.6.4.13 GO:0000398 ... Q14562 31409651
    126140 6hyy:A (1.566) BS01 MG 3.1.3.3 GO:0000287 ... P78330 31205021
    126141 6hyy:B (1.566) BS01 CA 3.1.3.3 GO:0000287 ... P78330 31205021
    126142 6hz4:A (3.6) BS02 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126143 6hz4:B (3.6) BS03 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126144 6hz4:C (3.6) BS03 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126145 6hz5:A (4.2) BS02 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126146 6hz5:G (4.2) BS02 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126147 6hz6:A (4.3) BS02 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126148 6hz6:G (4.3) BS02 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126149 6hz8:A (4.3) BS02 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126150 6hz8:G (4.3) BS02 MG 3.1.21.- GO:0005524 ... P15005 31296862
    126151 6hza:A (1.9) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126152 6hza:A (1.9) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126153 6hza:A (1.9) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126154 6hzb:A (1.9) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126155 6hzb:A (1.9) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126156 6hzb:A (1.9) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126157 6hzc:A (1.9) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126158 6hzc:A (1.9) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126159 6hzc:A (1.9) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126160 6hzd:A (1.9) BS02 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126161 6hzd:A (1.9) BS03 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126162 6hzd:A (1.9) BS04 CA 3.4.21.75 GO:0004252 ... P09958 30680958
    126163 6hzm:A (3.09) BS02 MG 7.6.2.2 GO:0005515 ... Q9UNQ0 30405239
    126164 6hzm:B (3.09) BS03 MG 7.6.2.2 GO:0005515 ... Q9UNQ0 30405239
    126165 6hzn:A (2.41) BS01 MN 5.1.3.19 N/A Q9UL01 N/A
    126166 6hzx:A (2.91) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31257622
    126167 6hzx:B (2.91) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 31257622
    126168 6hzz:A (2.52) BS02 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    126169 6hzz:B (2.52) BS02 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    126170 6i01:A (2.1) BS07 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    126171 6i01:B (2.1) BS06 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    126172 6i02:A (2.45) BS06 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    126173 6i02:B (2.45) BS05 CA 5.1.3.17 GO:0015012 ... O94923 30872481
    126174 6i03:A (1.02) BS03 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    126175 6i0j:A (1.35) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 31419777
    126176 6i0j:B (1.35) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 31419777
    126177 6i0l:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 31419777
    126178 6i0l:B (1.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 31419777
    126179 6i0r:A (2.1) BS01 FE 2.5.1.72 GO:0005737 ... Q9X1X7 30855610
    126180 6i0u:A (2.001) BS02 MG 2.7.7.52 N/A Q9VI58 30462292
    126181 6i0u:A (2.001) BS03 MG 2.7.7.52 N/A Q9VI58 30462292
    126182 6i0v:A (1.851) BS02 MG 2.7.7.52 N/A Q9VI58 30462292
    126183 6i0v:A (1.851) BS03 MG 2.7.7.52 N/A Q9VI58 30462292
    126184 6i0w:A (1.04) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32027480
    126185 6i0y:4 (3.2) BS02 ZN ? GO:0002181 ... P0A7Q6 30413621
    126186 6i1d:A (2.28) BS01 ZN 3.1.27.- N/A Q06224 30737185
    126187 6i1d:A (2.28) BS02 ZN 3.1.27.- N/A Q06224 30737185
    126188 6i1j:A (2.35) BS01 CU N/A N/A N/A 31489168
    126189 6i1k:A (2.65) BS04 MG 3.1.21.1
    4.6.1.22    		 GO:0003677 ... A0Q7Q2 30639240
    126190 6i1k:A (2.65) BS05 MG 3.1.21.1
    4.6.1.22    		 GO:0003677 ... A0Q7Q2 30639240
    126191 6i1k:A (2.65) BS06 MG 3.1.21.1
    4.6.1.22    		 GO:0003677 ... A0Q7Q2 30639240
    126192 6i1l:A (2.98) BS03 MG 3.1.21.1
    4.6.1.22    		 GO:0003677 ... A0Q7Q2 30639240
    126193 6i1l:D (2.98) BS04 MG 3.1.21.1
    4.6.1.22    		 GO:0003677 ... A0Q7Q2 30639240
    126194 6i1q:A (1.99) BS01 CA ? N/A A0A024S820 31604773
    126195 6i1t:A (1.8) BS01 CA ? N/A A0A024S820 31604773
    126196 6i1t:A (1.8) BS02 CA ? N/A A0A024S820 31604773
    126197 6i1u:A (1.08) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 32027480
    126198 6i21:A (1.5) BS01 MG ? N/A C5NSW6 31082213
    126199 6i24:A (1.43) BS01 MG ? N/A C5NSW6 31082213
    126200 6i25:A (1.97) BS01 MG ? N/A C5NSW6 31082213
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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