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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    125801 6hue:B (2.85) BS01 ZN 2.3.2.31 GO:0004842 ... O60260 30404819
    125802 6hue:B (2.85) BS02 ZN 2.3.2.31 GO:0004842 ... O60260 30404819
    125803 6hue:B (2.85) BS03 ZN 2.3.2.31 GO:0004842 ... O60260 30404819
    125804 6hue:B (2.85) BS04 ZN 2.3.2.31 GO:0004842 ... O60260 30404819
    125805 6hue:B (2.85) BS05 ZN 2.3.2.31 GO:0004842 ... O60260 30404819
    125806 6hue:B (2.85) BS06 ZN 2.3.2.31 GO:0004842 ... O60260 30404819
    125807 6hue:B (2.85) BS07 ZN 2.3.2.31 GO:0004842 ... O60260 30404819
    125808 6hue:B (2.85) BS08 ZN 2.3.2.31 GO:0004842 ... O60260 30404819
    125809 6huf:A (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125810 6huf:B (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125811 6huf:C (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125812 6huf:D (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125813 6huf:E (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125814 6huf:F (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125815 6huf:G (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125816 6huf:H (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125817 6huf:I (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125818 6huf:J (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125819 6huf:K (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125820 6huf:L (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125821 6huf:M (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125822 6huf:N (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125823 6huf:O (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125824 6huf:P (2.82) BS01 MG 3.6.5.2 GO:0003924 ... P51159 30950405
    125825 6hui:A (2.995) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125826 6hui:A (2.995) BS02 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125827 6hui:B (2.995) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125828 6hui:B (2.995) BS02 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125829 6hui:C (2.995) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125830 6hui:C (2.995) BS02 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125831 6hui:D (2.995) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125832 6hui:D (2.995) BS02 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125833 6hui:D (2.995) BS03 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125834 6hui:D (2.995) BS04 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125835 6hui:D (2.995) BS05 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125836 6hui:E (2.995) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125837 6hui:E (2.995) BS02 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125838 6hui:F (2.995) BS01 ZN 1.16.-.- GO:0005737 ... P80725 31433627
    125839 6hun:A (1.802) BS01 CA 4.1.1.39 GO:0000287 ... A2BK54 31205016
    125840 6huq:G (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125841 6huq:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125842 6huq:V (3.0) BS02 MG 3.4.25.1 GO:0004298 ... Q99436 30657666
    125843 6huq:Y (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125844 6hur:A (1.297) BS04 ZN ? GO:0015768 ... A0A1S2VYK0 31489370
    125845 6hur:A (1.297) BS05 ZN ? GO:0015768 ... A0A1S2VYK0 31489370
    125846 6hur:A (1.297) BS06 ZN ? GO:0015768 ... A0A1S2VYK0 31489370
    125847 6hur:A (1.297) BS07 ZN ? GO:0015768 ... A0A1S2VYK0 31489370
    125848 6hus:A (1.409) BS05 ZN ? GO:0015768 ... A0A1S2VYK0 31489370
    125849 6hus:A (1.409) BS06 ZN ? GO:0015768 ... A0A1S2VYK0 31489370
    125850 6hus:A (1.409) BS07 ZN ? GO:0015768 ... A0A1S2VYK0 31489370
    125851 6hus:A (1.409) BS08 ZN ? GO:0015768 ... A0A1S2VYK0 31489370
    125852 6huu:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125853 6huu:I (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125854 6huu:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125855 6huu:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 30657666
    125856 6huu:W (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125857 6huu:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125858 6huv:G (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125859 6huv:K (3.1) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125860 6huv:N (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125861 6huv:V (3.1) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 30657666
    125862 6huv:Y (3.1) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125863 6huv:Z (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125864 6hv2:A (1.709) BS02 ZN 3.4.24.- GO:0004222 ... P45452 30615822
    125865 6hv2:A (1.709) BS03 ZN 3.4.24.- GO:0004222 ... P45452 30615822
    125866 6hv2:A (1.709) BS04 CA 3.4.24.- GO:0004222 ... P45452 30615822
    125867 6hv2:A (1.709) BS05 CA 3.4.24.- GO:0004222 ... P45452 30615822
    125868 6hv2:A (1.709) BS06 CA 3.4.24.- GO:0004222 ... P45452 30615822
    125869 6hv3:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125870 6hv3:I (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125871 6hv3:K (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125872 6hv3:N (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125873 6hv3:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125874 6hv3:W (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125875 6hv3:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125876 6hv3:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125877 6hv4:G (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125878 6hv4:I (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125879 6hv4:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125880 6hv4:N (3.0) BS02 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125881 6hv4:V (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125882 6hv4:Y (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125883 6hv4:Z (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125884 6hv5:G (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125885 6hv5:I (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125886 6hv5:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125887 6hv5:V (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125888 6hv5:W (3.0) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125889 6hv5:Y (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125890 6hv7:G (3.4) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125891 6hv7:K (3.4) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125892 6hv7:V (3.4) BS02 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125893 6hv7:Y (3.4) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125894 6hv8:A (4.4) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0003677 ... P21951 30498216
    125895 6hv8:A (4.4) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0003677 ... P21951 30498216
    125896 6hv9:A (4.98) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0003677 ... P21951 30498216
    125897 6hv9:A (4.98) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0003677 ... P21951 30498216
    125898 6hva:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125899 6hva:I (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125900 6hva:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125901 6hva:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125902 6hva:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125903 6hva:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125904 6hva:Z (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125905 6hvg:A (2.8) BS01 CA 2.4.1.5 GO:0009250 ... Q9RE05 N/A
    125906 6hvg:B (2.8) BS01 CA 2.4.1.5 GO:0009250 ... Q9RE05 N/A
    125907 6hvr:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125908 6hvr:I (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125909 6hvr:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125910 6hvr:N (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125911 6hvr:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125912 6hvr:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125913 6hvr:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125914 6hvs:G (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125915 6hvs:K (3.1) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125916 6hvs:N (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125917 6hvs:V (3.1) BS02 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125918 6hvs:W (3.1) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125919 6hvs:Y (3.1) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125920 6hvs:Z (3.1) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125921 6hvt:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125922 6hvt:I (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125923 6hvt:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125924 6hvt:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125925 6hvt:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125926 6hvt:W (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125927 6hvt:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125928 6hvt:Z (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125929 6hvu:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125930 6hvu:I (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125931 6hvu:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125932 6hvu:V (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125933 6hvu:W (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125934 6hvu:Y (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125935 6hvv:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125936 6hvv:I (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125937 6hvv:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125938 6hvv:N (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125939 6hvv:V (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125940 6hvv:Y (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125941 6hvv:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125942 6hvw:G (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125943 6hvw:I (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125944 6hvw:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125945 6hvw:V (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P25043
    P40306    		 30657666
    125946 6hvw:W (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125947 6hvw:Y (3.0) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125948 6hvx:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125949 6hvx:I (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125950 6hvx:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125951 6hvx:V (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    125952 6hvx:Y (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125953 6hvx:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125954 6hvy:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125955 6hvy:I (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125956 6hvy:K (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125957 6hvy:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    125958 6hvy:W (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125959 6hvy:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125960 6hvy:Z (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125961 6hw0:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125962 6hw0:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125963 6hw0:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125964 6hw0:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    125965 6hw0:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125966 6hw0:Z (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125967 6hw1:B (2.5) BS01 MG 3.1.1.3 GO:0004806 ... O59952 31098026
    125968 6hw2:A (1.941) BS01 CA ? GO:0005245 ... D4A055 N/A
    125969 6hw2:B (1.941) BS01 CA ? GO:0005634 ... Q13185 N/A
    125970 6hw3:G (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125971 6hw3:I (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125972 6hw3:K (2.6) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125973 6hw3:N (2.6) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125974 6hw3:V (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    125975 6hw3:Y (2.6) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125976 6hw3:Z (2.6) BS02 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125977 6hw4:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125978 6hw4:I (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125979 6hw4:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125980 6hw4:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125981 6hw4:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    125982 6hw4:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125983 6hw4:Z (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125984 6hw5:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125985 6hw5:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125986 6hw5:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125987 6hw5:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    125988 6hw5:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125989 6hw5:Z (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125990 6hw6:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125991 6hw6:I (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125992 6hw6:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125993 6hw6:N (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P38624 30657666
    125994 6hw6:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    125995 6hw6:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    125996 6hw6:Z (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P23724 30657666
    125997 6hw7:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 30657666
    125998 6hw7:I (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P25451 30657666
    125999 6hw7:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 30657666
    126000 6hw7:V (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P25043 30657666
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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