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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    125001 6h57:A (2.3) BS01 MG 3.6.4.13 GO:0000462 ... Q04217 31188444
    125002 6h59:A (1.8) BS01 MG 2.7.8.- GO:0000287 ... P9WPG7 31098408
    125003 6h59:A (1.8) BS02 MG 2.7.8.- GO:0000287 ... P9WPG7 31098408
    125004 6h59:B (1.8) BS01 MG 2.7.8.- GO:0000287 ... P9WPG7 31098408
    125005 6h59:B (1.8) BS02 MG 2.7.8.- GO:0000287 ... P9WPG7 31098408
    125006 6h5a:A (1.88) BS01 MN 2.7.8.- GO:0000287 ... P9WPG7 31098408
    125007 6h5a:A (1.88) BS02 MN 2.7.8.- GO:0000287 ... P9WPG7 31098408
    125008 6h5a:B (1.88) BS01 MN 2.7.8.- GO:0000287 ... P9WPG7 31098408
    125009 6h5a:B (1.88) BS02 MN 2.7.8.- GO:0000287 ... P9WPG7 31098408
    125010 6h5b:A (2.8) BS02 MG ? GO:0003924 ... Q1DB04 31757955
    125011 6h5e:B (2.139) BS01 ZN 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    125012 6h5e:B (2.139) BS03 MG 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    125013 6h5e:D (2.139) BS01 ZN 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    125014 6h5e:D (2.139) BS03 MG 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    125015 6h5k:A (1.54) BS01 ZN ? N/A V6F235 N/A
    125016 6h5k:A (1.54) BS02 ZN ? N/A V6F235 N/A
    125017 6h5k:A (1.54) BS03 ZN ? N/A V6F235 N/A
    125018 6h5m:A (1.6) BS01 ZN ? N/A V6F235 N/A
    125019 6h5u:A (2.0) BS01 ZN ? N/A V6F235 N/A
    125020 6h5u:C (2.0) BS01 ZN ? N/A V6F235 N/A
    125021 6h5w:A (1.37) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 30372620
    125022 6h5x:A (1.8) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 30372620
    125023 6h5x:B (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 30372620
    125024 6h5x:B (1.8) BS03 MG 3.4.15.1 GO:0006508 ... P12821 30372620
    125025 6h5y:A (2.3) BS01 CU N/A GO:0005507 ... N/A 27741301
    125026 6h5y:A (2.3) BS02 CU N/A GO:0005507 ... N/A 27741301
    125027 6h5y:A (2.3) BS03 CU N/A GO:0005507 ... N/A 27741301
    125028 6h5y:A (2.3) BS04 CU N/A GO:0005507 ... N/A 27741301
    125029 6h5y:B (2.3) BS01 CU N/A GO:0005507 ... N/A 27741301
    125030 6h5y:B (2.3) BS02 CU N/A GO:0005507 ... N/A 27741301
    125031 6h5y:B (2.3) BS03 CU N/A GO:0005507 ... N/A 27741301
    125032 6h5y:B (2.3) BS04 CU N/A GO:0005507 ... N/A 27741301
    125033 6h61:A (4.02) BS03 ZN 3.6.4.13 GO:0002376 ... Q8R5F7 30449722
    125034 6h62:A (2.684) BS01 ZN 2.4.2.64 GO:0005515 ... Q9JMA2 35815944
    125035 6h62:B (2.684) BS01 ZN 2.4.2.64 GO:0005515 ... Q9JMA2 35815944
    125036 6h63:A (2.08) BS07 MG 1.12.7.2 GO:0005506 ... P29166 N/A
    125037 6h66:A (4.16) BS03 ZN 3.6.4.13 GO:0002376 ... Q8R5F7 30449722
    125038 6h67:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P10964 30127008
    125039 6h67:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P10964 30127008
    125040 6h67:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P22138 30127008
    125041 6h67:I (3.6) BS01 ZN ? GO:0000122 ... P32529 30127008
    125042 6h67:J (3.6) BS01 ZN ? GO:0000428 ... P22139 30127008
    125043 6h67:L (3.6) BS01 ZN ? GO:0000428 ... P40422 30127008
    125044 6h68:A (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... P10964 30127008
    125045 6h68:A (4.6) BS05 ZN 2.7.7.6 GO:0000428 ... P10964 30127008
    125046 6h68:B (4.6) BS04 ZN 2.7.7.6 GO:0000428 ... P22138 30127008
    125047 6h68:I (4.6) BS01 ZN ? GO:0000122 ... P32529 30127008
    125048 6h68:J (4.6) BS01 ZN ? GO:0000428 ... P22139 30127008
    125049 6h68:L (4.6) BS01 ZN ? GO:0000428 ... P40422 30127008
    125050 6h6l:A (2.5) BS01 MG ? N/A A7U694 N/A
    125051 6h6l:A (2.5) BS02 MG ? N/A A7U694 N/A
    125052 6h6l:B (2.5) BS03 MG ? N/A A7U694 N/A
    125053 6h6l:B (2.5) BS04 MG ? N/A A7U694 N/A
    125054 6h6l:C (2.5) BS01 MG ? N/A A7U694 N/A
    125055 6h6l:C (2.5) BS02 MG ? N/A A7U694 N/A
    125056 6h6l:D (2.5) BS03 MG ? N/A A7U694 N/A
    125057 6h6l:D (2.5) BS04 MG ? N/A A7U694 N/A
    125058 6h6n:A (2.12) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    125059 6h6n:A (2.12) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    125060 6h6n:A (2.12) BS03 CA ? GO:0032150 ... P0ADP7 30686758
    125061 6h6n:A (2.12) BS04 CA ? GO:0032150 ... P0ADP7 30686758
    125062 6h6n:B (2.12) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    125063 6h6o:A (1.7) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    125064 6h6o:A (1.7) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    125065 6h6o:A (1.7) BS03 CA ? GO:0032150 ... P0ADP7 30686758
    125066 6h6o:B (1.7) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    125067 6h6p:A (2.5) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    125068 6h6p:A (2.5) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    125069 6h6p:A (2.5) BS03 CA ? GO:0032150 ... P0ADP7 30686758
    125070 6h6p:A (2.5) BS04 CA ? GO:0032150 ... P0ADP7 30686758
    125071 6h6p:A (2.5) BS05 CA ? GO:0032150 ... P0ADP7 30686758
    125072 6h6p:A (2.5) BS06 CA ? GO:0032150 ... P0ADP7 30686758
    125073 6h6p:B (2.5) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    125074 6h6p:B (2.5) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    125075 6h6p:C (2.5) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    125076 6h6p:C (2.5) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    125077 6h6p:D (2.5) BS01 CA ? GO:0032150 ... P0ADP7 30686758
    125078 6h6p:D (2.5) BS02 CA ? GO:0032150 ... P0ADP7 30686758
    125079 6h6q:A (2.63) BS01 ZN 2.3.2.27 N/A P98170 30091600
    125080 6h6q:B (2.63) BS01 ZN 2.3.2.27 N/A P98170 30091600
    125081 6h6r:A (2.03) BS01 ZN 2.3.2.27 N/A P98170 30091600
    125082 6h6s:A (1.45) BS01 NI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30470900
    125083 6h6s:B (1.45) BS01 NI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30470900
    125084 6h6t:A (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125085 6h6t:B (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125086 6h6t:C (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125087 6h6t:D (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125088 6h6t:E (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125089 6h6t:F (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125090 6h6t:G (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125091 6h6t:H (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125092 6h6t:I (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125093 6h6t:J (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125094 6h6t:K (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125095 6h6t:L (1.9) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125096 6h6u:A (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125097 6h6u:A (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125098 6h6u:A (2.0) BS03 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    125099 6h6u:B (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125100 6h6u:B (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125101 6h6u:B (2.0) BS03 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    125102 6h6u:C (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125103 6h6u:C (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125104 6h6u:C (2.0) BS03 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    125105 6h6u:D (2.0) BS01 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125106 6h6u:D (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125107 6h6u:D (2.0) BS03 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    125108 6h6u:E (2.0) BS01 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    125109 6h6u:E (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125110 6h6u:E (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125111 6h6u:F (2.0) BS01 CA 1.16.3.1 GO:0004322 ... P02794 N/A
    125112 6h6u:F (2.0) BS02 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125113 6h6u:F (2.0) BS03 FE 1.16.3.1 GO:0004322 ... P02794 N/A
    125114 6h6v:A (2.66) BS02 MN ? GO:0000166 ... A5D4Z9 31057985
    125115 6h6v:A (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    125116 6h6v:B (2.66) BS02 MN ? GO:0000166 ... A5D4Z9 31057985
    125117 6h6v:B (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    125118 6h6v:C (2.66) BS02 MN ? GO:0000166 ... A5D4Z9 31057985
    125119 6h6v:C (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    125120 6h6v:D (2.66) BS02 MN ? GO:0000166 ... A5D4Z9 31057985
    125121 6h6v:D (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    125122 6h6v:E (2.66) BS02 MN ? GO:0000166 ... A5D4Z9 31057985
    125123 6h6v:E (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    125124 6h6v:F (2.66) BS02 MN ? GO:0000166 ... A5D4Z9 31057985
    125125 6h6v:F (2.66) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    125126 6h6w:A (1.9) BS03 MG ? GO:0005737 ... P84308 30278367
    125127 6h6x:A (2.25) BS01 MN ? GO:0000166 ... A5D4Z9 31057985
    125128 6h6x:A (2.25) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    125129 6h6x:B (2.25) BS01 MN ? GO:0000166 ... A5D4Z9 31057985
    125130 6h6x:B (2.25) BS03 CA ? GO:0000166 ... A5D4Z9 31057985
    125131 6h73:A (2.3) BS03 MG ? GO:0005737 ... P84308 30278367
    125132 6h74:A (1.801) BS03 MG ? GO:0005737 ... P84308 30278367
    125133 6h77:A (2.1) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125134 6h77:B (2.1) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125135 6h77:C (2.1) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125136 6h77:D (2.1) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125137 6h78:A (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125138 6h78:B (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125139 6h78:C (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125140 6h78:D (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125141 6h78:E (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125142 6h78:F (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125143 6h78:G (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125144 6h78:H (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125145 6h78:I (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125146 6h78:J (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125147 6h78:K (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125148 6h78:L (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125149 6h78:M (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125150 6h78:N (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125151 6h78:O (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125152 6h78:P (2.7) BS02 ZN ? GO:0008641 ... Q9GZZ9 30412706
    125153 6h7c:A (1.681) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    125154 6h7t:A (2.1) BS01 CA ? N/A A0A024S820 31604773
    125155 6h7x:A (2.892) BS01 MG 3.6.4.12 GO:0000492 ... Q9Y230 30213962
    125156 6h7y:A (1.81) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30429952
    125157 6h7y:A (1.81) BS03 ZN 3.4.17.21 GO:0004180 ... Q04609 30429952
    125158 6h7y:A (1.81) BS04 CA 3.4.17.21 GO:0004180 ... Q04609 30429952
    125159 6h7z:A (2.0) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 30429952
    125160 6h7z:A (2.0) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30429952
    125161 6h7z:A (2.0) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30429952
    125162 6h80:A (2.3) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 30602529
    125163 6h80:A (2.3) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 30602529
    125164 6h87:A (1.5) BS01 ZN ? N/A V6F235 N/A
    125165 6h87:A (1.5) BS02 ZN ? N/A V6F235 N/A
    125166 6h87:A (1.5) BS03 ZN ? N/A V6F235 N/A
    125167 6h8b:A (1.9) BS03 MG ? GO:0005737 ... P84308 30278367
    125168 6h8h:A (1.901) BS03 MG ? GO:0005737 ... P84308 30278367
    125169 6h8j:C (1.45) BS01 NI 3.5.1.5 GO:0005737 ... P41020 30735374
    125170 6h8j:C (1.45) BS02 NI 3.5.1.5 GO:0005737 ... P41020 30735374
    125171 6h8l:A (1.54) BS01 ZN 3.5.1.- GO:0005975 ... O34798 31690626
    125172 6h8l:B (1.54) BS01 ZN 3.5.1.- GO:0005975 ... O34798 31690626
    125173 6h8n:A (1.26) BS01 ZN 3.5.1.- GO:0005975 ... O34798 31690626
    125174 6h8n:B (1.26) BS01 ZN 3.5.1.- GO:0005975 ... O34798 31690626
    125175 6h8p:A (1.983) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 30156264
    125176 6h8p:B (1.983) BS02 ZN 1.14.11.66
    1.14.11.69    		 N/A O75164 30156264
    125177 6h8u:A (1.9) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125178 6h8v:A (1.84) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125179 6h8v:B (1.84) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125180 6h8w:A (1.98) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125181 6h8x:A (1.83) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125182 6h8x:B (1.83) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125183 6h8y:A (1.89) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125184 6h8z:A (1.6) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125185 6h90:A (1.31) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125186 6h91:A (2.38) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125187 6h91:B (2.38) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125188 6h92:A (2.6) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125189 6h93:A (1.77) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125190 6h93:B (1.77) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125191 6h94:A (1.49) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    125192 6h98:A (1.8) BS01 MG ? GO:0004792 ... B3ECE3 30943021
    125193 6h99:A (1.6) BS01 MG ? GO:0004792 ... B3ECE3 30943021
    125194 6h99:A (1.6) BS02 MG ? GO:0004792 ... B3ECE3 30943021
    125195 6h99:A (1.6) BS03 MG ? GO:0004792 ... B3ECE3 30943021
    125196 6h9h:A (1.75) BS02 MN ? GO:0046872 ... Q5NWP0 30397343
    125197 6h9h:B (1.75) BS02 MN ? GO:0046872 ... Q5NWP0 30397343
    125198 6h9i:B (2.29) BS02 MN ? GO:0046872 ... Q5NWP0 30397343
    125199 6h9j:A (1.83) BS02 ZN 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 N/A
    125200 6h9r:A (2.4) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q6YMS4 30602529
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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