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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    123601 6fta:C (2.34) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123602 6fta:D (2.34) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123603 6ftg:g (9.1) BS02 ZN ? GO:0003735 ... G1TXG5 29519914
    123604 6ftg:j (9.1) BS03 ZN ? GO:0003735 ... U3KPD5 29519914
    123605 6ftg:m (9.1) BS02 ZN N/A GO:0003735 ... N/A 29519914
    123606 6ftg:o (9.1) BS02 ZN ? GO:0003735 ... G1T040 29519914
    123607 6ftg:p (9.1) BS02 ZN ? GO:0003735 ... G1SY53 29519914
    123608 6fti:g (4.2) BS02 ZN ? GO:0003735 ... G1TXG5 29519914
    123609 6fti:j (4.2) BS03 ZN ? GO:0003735 ... U3KPD5 29519914
    123610 6fti:m (4.2) BS02 ZN N/A GO:0003735 ... N/A 29519914
    123611 6fti:o (4.2) BS03 ZN ? GO:0003735 ... G1T040 29519914
    123612 6fti:p (4.2) BS02 ZN ? GO:0003735 ... G1SY53 29519914
    123613 6ftj:g (4.7) BS02 ZN ? GO:0003735 ... G1TXG5 29519914
    123614 6ftj:j (4.7) BS03 ZN ? GO:0003735 ... U3KPD5 29519914
    123615 6ftj:m (4.7) BS02 ZN N/A GO:0003735 ... N/A 29519914
    123616 6ftj:o (4.7) BS02 ZN ? GO:0003735 ... G1T040 29519914
    123617 6ftj:p (4.7) BS02 ZN ? GO:0003735 ... G1SY53 29519914
    123618 6ftl:A (2.6) BS01 MG 4.1.1.39 GO:0000287 ... A0A3B6UEX0 29925588
    123619 6ftl:C (2.6) BS01 MG 4.1.1.39 GO:0000287 ... A0A3B6UEX0 29925588
    123620 6ftl:E (2.6) BS01 MG 4.1.1.39 GO:0000287 ... A0A3B6UEX0 29925588
    123621 6ftl:G (2.6) BS01 MG 4.1.1.39 GO:0000287 ... A0A3B6UEX0 29925588
    123622 6ftm:A (2.1) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    123623 6ftm:B (2.1) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    123624 6ftt:A (2.29) BS01 MG ? GO:0000105 ... Q4FTX3 N/A
    123625 6ftt:B (2.29) BS01 MG ? GO:0000105 ... Q4FTX3 N/A
    123626 6ftt:C (2.29) BS01 MG ? GO:0000105 ... Q4FTX3 N/A
    123627 6ftt:D (2.29) BS01 MG ? GO:0000105 ... Q4FTX3 N/A
    123628 6ftv:A (1.58) BS01 MG 1.16.3.1 GO:0004322 ... P02794 30063237
    123629 6ftv:A (1.58) BS02 MG 1.16.3.1 GO:0004322 ... P02794 30063237
    123630 6ftw:A (2.16) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31327675
    123631 6ftw:B (2.16) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31327675
    123632 6ftw:C (2.16) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31327675
    123633 6ftw:D (2.16) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 31327675
    123634 6fu0:A () BS01 ZN N/A N/A N/A N/A
    123635 6fu0:A () BS02 ZN N/A N/A N/A N/A
    123636 6fu0:B () BS01 ZN N/A N/A N/A N/A
    123637 6fu0:B () BS02 ZN N/A N/A N/A N/A
    123638 6fu0:C () BS01 ZN N/A N/A N/A N/A
    123639 6fu0:C () BS02 ZN N/A N/A N/A N/A
    123640 6fu0:D () BS01 ZN N/A N/A N/A N/A
    123641 6fu0:D () BS02 ZN N/A N/A N/A N/A
    123642 6fu1:A (1.548) BS01 ZN 3.5.1.98 GO:0000122 ... A5H660 29498707
    123643 6fu1:B (1.548) BS01 ZN 3.5.1.98 GO:0000122 ... A5H660 29498707
    123644 6fu1:C (1.548) BS02 ZN 3.5.1.98 GO:0000122 ... A5H660 29498707
    123645 6fu1:D (1.548) BS02 ZN 3.5.1.98 GO:0000122 ... A5H660 29498707
    123646 6fu3:A (1.8) BS01 CA 1.11.1.5 GO:0009055 ... Q5F5Z9 N/A
    123647 6fu3:B (1.8) BS01 CA 1.11.1.5 GO:0009055 ... Q5F5Z9 N/A
    123648 6fu6:A (1.95) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123649 6fu6:A (1.95) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123650 6fu6:B (1.95) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123651 6fu6:B (1.95) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123652 6fu7:B (2.31) BS01 MG ? GO:0000105 ... Q4FTX3 N/A
    123653 6fue:A (1.78) BS01 ZN N/A N/A N/A 29886016
    123654 6fue:E (1.78) BS01 ZN N/A N/A N/A 29886016
    123655 6fue:F (1.78) BS01 ZN N/A N/A N/A 29886016
    123656 6fuk:A (2.0) BS01 MN 1.14.11.68 N/A O15550 30226987
    123657 6fuk:A (2.0) BS03 ZN 1.14.11.68 N/A O15550 30226987
    123658 6ful:A (1.649) BS02 MN 1.14.11.68 N/A O15550 30226987
    123659 6ful:A (1.649) BS03 ZN 1.14.11.68 N/A O15550 30226987
    123660 6fuw:C (3.07) BS02 ZN ? GO:0003723 ... O95639 29358758
    123661 6fuw:C (3.07) BS03 ZN ? GO:0003723 ... O95639 29358758
    123662 6fuw:C (3.07) BS04 ZN ? GO:0003723 ... O95639 29358758
    123663 6fv3:A (2.58) BS01 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123664 6fv3:A (2.58) BS02 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123665 6fv3:B (2.58) BS01 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123666 6fv3:B (2.58) BS02 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123667 6fv3:C (2.58) BS01 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123668 6fv3:C (2.58) BS02 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123669 6fv3:D (2.58) BS01 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123670 6fv3:D (2.58) BS02 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123671 6fv4:A (1.974) BS01 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123672 6fv4:B (1.974) BS01 ZN 3.5.1.25 GO:0006040 ... A0QU89 29728457
    123673 6fv5:A (2.179) BS01 ZN ? GO:0000049 ... B8ZXI1 29862811
    123674 6fv5:B (2.179) BS01 ZN ? GO:0000049 ... B8ZXI1 29862811
    123675 6fv9:A (2.48) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    123676 6fv9:B (2.48) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    123677 6fvj:D (2.6) BS01 CA 3.1.1.6
    3.1.2.-
    3.1.2.2    		 GO:0005886 ... P9WQD5 30292819
    123678 6fvk:A () BS01 ZN N/A N/A N/A N/A
    123679 6fvk:A () BS02 ZN N/A N/A N/A N/A
    123680 6fvm:A (1.631) BS02 CA ? GO:0003677 ... P0A988 30912430
    123681 6fvp:A () BS01 ZN N/A N/A N/A N/A
    123682 6fvp:A () BS02 ZN N/A N/A N/A N/A
    123683 6fvs:D (3.2) BS01 ZN ? GO:0004888 ... G2FID1 29632192
    123684 6fvt:J (4.1) BS02 MG ? GO:0000502 ... Q01939 30067984
    123685 6fvt:L (4.1) BS03 MG ? GO:0005524 ... P53549 30067984
    123686 6fvu:H (4.5) BS02 MG ? GO:0000502 ... P33299 30067984
    123687 6fvu:L (4.5) BS03 MG ? GO:0005524 ... P53549 30067984
    123688 6fw1:A () BS01 ZN N/A N/A N/A N/A
    123689 6fw1:A () BS02 ZN N/A N/A N/A N/A
    123690 6fw3:A (1.78) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123691 6fw3:B (1.78) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123692 6fw3:C (1.78) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123693 6fw3:D (1.78) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123694 6fw7:A (3.0) BS03 MG 1.4.3.23 GO:0016491 ... Q9S3V1 N/A
    123695 6fw7:B (3.0) BS03 MG 1.4.3.23 GO:0016491 ... Q9S3V1 N/A
    123696 6fw8:A (2.4) BS03 MG 1.4.3.23 GO:0016491 ... Q9S3V1 N/A
    123697 6fw8:B (2.4) BS03 MG 1.4.3.23 GO:0016491 ... Q9S3V1 N/A
    123698 6fw9:A (2.739) BS03 MG 1.4.3.23 GO:0016491 ... Q9S3V1 N/A
    123699 6fw9:B (2.739) BS03 MG 1.4.3.23 GO:0016491 ... Q9S3V1 N/A
    123700 6fwa:A (2.846) BS03 MG 1.4.3.23 GO:0016491 ... Q9S3V1 N/A
    123701 6fwa:B (2.846) BS03 MG 1.4.3.23 GO:0016491 ... Q9S3V1 N/A
    123702 6fwe:A (1.774) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123703 6fwe:A (1.774) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123704 6fwf:A (4.2) BS03 CA 1.7.99.7 GO:0004129 ... C6S880 29483528
    123705 6fwf:A (4.2) BS04 FE 1.7.99.7 GO:0004129 ... C6S880 29483528
    123706 6fwh:A (1.79) BS01 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123707 6fwh:A (1.79) BS02 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123708 6fwh:B (1.79) BS01 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123709 6fwh:B (1.79) BS02 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123710 6fwh:C (1.79) BS02 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123711 6fwh:C (1.79) BS03 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123712 6fwh:D (1.79) BS01 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123713 6fwh:E (1.79) BS02 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123714 6fwh:F (1.79) BS02 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123715 6fwh:F (1.79) BS03 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123716 6fwh:G (1.79) BS03 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123717 6fwh:G (1.79) BS04 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123718 6fwh:H (1.79) BS02 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123719 6fwh:H (1.79) BS03 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123720 6fwh:I (1.79) BS01 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123721 6fwh:J (1.79) BS02 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123722 6fwh:K (1.79) BS03 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123723 6fwh:K (1.79) BS04 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123724 6fwh:L (1.79) BS03 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123725 6fwh:L (1.79) BS04 MN 4.2.1.19 GO:0000105 ... L8H477 29969448
    123726 6fwh:L (1.79) BS06 MG 4.2.1.19 GO:0000105 ... L8H477 29969448
    123727 6fwk:A (2.503) BS04 CA 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 30670696
    123728 6fwk:A (2.503) BS05 CA 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 30670696
    123729 6fwk:A (2.503) BS06 FE 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 30670696
    123730 6fwk:B (2.503) BS06 CA 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 30670696
    123731 6fwk:B (2.503) BS07 CA 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 30670696
    123732 6fwk:B (2.503) BS08 CA 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 30670696
    123733 6fwk:B (2.503) BS09 FE 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 30670696
    123734 6fwv:A (2.58) BS01 ZN ? N/A A0A6L8P957 30052296
    123735 6fwv:A (2.58) BS02 ZN ? N/A A0A6L8P957 30052296
    123736 6fwv:B (2.58) BS01 ZN ? N/A A0A6L8P957 30052296
    123737 6fwv:B (2.58) BS02 ZN ? N/A A0A6L8P957 30052296
    123738 6fwz:A (3.1) BS01 MG 2.7.8.15 GO:0003975 ... Q9H3H5 30388443
    123739 6fx8:A (1.8) BS01 AU ? GO:0005506 ... P02791 29709536
    123740 6fx9:A (1.5) BS01 AU ? GO:0005506 ... P02791 29709536
    123741 6fxh:A (2.3) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 30798051
    123742 6fxk:A (2.7) BS02 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123743 6fxm:A (2.1) BS02 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123744 6fxm:A (2.1) BS03 MN 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123745 6fxm:A (2.1) BS04 MN 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123746 6fxr:A (2.1) BS03 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123747 6fxr:A (2.1) BS04 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123748 6fxr:A (2.1) BS05 MN 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123749 6fxt:A (2.5) BS03 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123750 6fxt:A (2.5) BS04 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123751 6fxt:A (2.5) BS05 MN 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123752 6fxx:A (3.0) BS03 MN 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123753 6fxx:A (3.0) BS04 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123754 6fxx:A (3.0) BS05 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123755 6fxy:A (2.138) BS03 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123756 6fxy:A (2.138) BS04 FE2 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123757 6fxy:A (2.138) BS05 MN 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 30089812
    123758 6fyh:A (2.906) BS01 ZN 2.3.2.26 GO:0004842 ... Q7Z6Z7 29964046
    123759 6fyx:a (3.5) BS03 ZN ? GO:0003729 ... Q6CS01 30475211
    123760 6fyx:l (3.5) BS02 ZN ? GO:0001731 ... P09064 30475211
    123761 6fyy:a (3.02) BS03 ZN ? GO:0003729 ... Q6CS01 30475211
    123762 6fyy:b (3.02) BS02 ZN ? GO:0000028 ... Q6CNL2 30475211
    123763 6fyy:l (3.02) BS02 ZN ? GO:0001731 ... P09064 30475211
    123764 6fyz:A (2.15) BS02 ZN 3.5.1.98 N/A P56524 30463802
    123765 6fyz:A (2.15) BS03 ZN 3.5.1.98 N/A P56524 30463802
    123766 6fyz:B (2.15) BS02 ZN 3.5.1.98 N/A P56524 30463802
    123767 6fyz:B (2.15) BS03 ZN 3.5.1.98 N/A P56524 30463802
    123768 6fyz:C (2.15) BS02 ZN 3.5.1.98 N/A P56524 30463802
    123769 6fyz:C (2.15) BS03 ZN 3.5.1.98 N/A P56524 30463802
    123770 6fz1:A (2.2) BS01 CA 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123771 6fz1:A (2.2) BS02 ZN 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123772 6fz2:A (2.05) BS03 MG 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 31423787
    123773 6fz2:B (2.05) BS03 MG 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 31423787
    123774 6fz3:A (2.0) BS03 MG 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 31423787
    123775 6fz3:B (2.0) BS03 MG 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 31423787
    123776 6fz5:A (1.89) BS03 MG 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 31423787
    123777 6fz5:B (1.89) BS03 MG 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 31423787
    123778 6fz7:A (1.736) BS01 ZN 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123779 6fz7:A (1.736) BS02 CA 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123780 6fz8:A (2.2) BS01 ZN 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123781 6fz8:A (2.2) BS02 CA 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123782 6fz9:A (1.2463) BS01 CA 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123783 6fz9:A (1.2463) BS02 ZN 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123784 6fza:A (1.75) BS01 ZN 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123785 6fza:A (1.75) BS02 CA 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123786 6fzb:A (2.05) BS02 MG 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    123787 6fzb:A (2.05) BS03 MG 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    123788 6fzb:B (2.05) BS02 MG 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    123789 6fzb:B (2.05) BS03 MG 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    123790 6fzc:A (2.7) BS01 ZN 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123791 6fzc:A (2.7) BS02 CA 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123792 6fzd:A (1.8) BS01 ZN 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123793 6fzd:A (1.8) BS02 CA 3.1.1.3 GO:0004806 ... Q93A71 30217852
    123794 6fzs:A (2.31) BS03 ZN ? GO:0005667 ... Q99717 N/A
    123795 6fzs:B (2.31) BS03 ZN ? GO:0005667 ... Q99717 N/A
    123796 6fzt:A (2.46) BS02 ZN ? GO:0005667 ... O15198 N/A
    123797 6fzt:B (2.46) BS03 ZN ? GO:0005667 ... O15198 N/A
    123798 6fzv:A (2.7) BS01 CA ? GO:0005201 ... P02461 30078642
    123799 6fzv:B (2.7) BS01 CA ? GO:0005201 ... P02461 30078642
    123800 6fzv:C (2.7) BS01 CA ? GO:0005201 ... P02461 30078642
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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