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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    123401 6fny:E (2.79) BS01 CA 3.1.6.6 GO:0005737 ... O69787 29458126
    123402 6fny:F (2.79) BS01 CA 3.1.6.6 GO:0005737 ... O69787 29458126
    123403 6fny:G (2.79) BS01 CA 3.1.6.6 GO:0005737 ... O69787 29458126
    123404 6fny:H (2.79) BS01 CA 3.1.6.6 GO:0005737 ... O69787 29458126
    123405 6fog:A (1.94) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123406 6fog:A (1.94) BS03 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123407 6fog:B (1.94) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123408 6fog:B (1.94) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123409 6fog:C (1.94) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123410 6fog:C (1.94) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123411 6fog:D (1.94) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123412 6fog:D (1.94) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123413 6fog:E (1.94) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123414 6fog:E (1.94) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123415 6fog:F (1.94) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123416 6fog:F (1.94) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123417 6fog:G (1.94) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123418 6fog:G (1.94) BS03 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123419 6fog:H (1.94) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123420 6fog:H (1.94) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123421 6foh:A (1.56) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123422 6foh:A (1.56) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123423 6foh:B (1.56) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123424 6foh:B (1.56) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 30348641
    123425 6foi:A (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123426 6foi:D (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123427 6foi:F (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123428 6foi:G (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123429 6foi:I (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123430 6foi:K (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123431 6foi:M (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123432 6foi:O (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123433 6foi:Q (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123434 6foi:S (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123435 6foi:U (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123436 6foi:W (2.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123437 6fok:A (1.97) BS01 CU ? GO:0005515 ... G3XD89 34762655
    123438 6fok:B (1.97) BS02 CU ? GO:0005515 ... G3XD89 34762655
    123439 6fol:A (2.55) BS01 ZN ? GO:0005507 ... O14618 30735496
    123440 6fol:B (2.55) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123441 6fol:C (2.55) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123442 6fol:D (2.55) BS01 ZN ? GO:0005507 ... O14618 30735496
    123443 6fol:E (2.55) BS01 ZN ? GO:0005507 ... O14618 30735496
    123444 6fol:F (2.55) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123445 6fol:G (2.55) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123446 6fol:H (2.55) BS01 ZN ? GO:0005507 ... O14618 30735496
    123447 6fon:A (3.05) BS01 ZN ? GO:0005507 ... O14618 30735496
    123448 6fon:B (3.05) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123449 6fon:C (3.05) BS01 ZN ? GO:0005507 ... O14618 30735496
    123450 6fon:D (3.05) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123451 6foo:A (8.2) BS01 ZN ? GO:0003151 ... P11716 30078641
    123452 6foo:B (8.2) BS01 ZN ? GO:0003151 ... P11716 30078641
    123453 6foo:C (8.2) BS01 ZN ? GO:0003151 ... P11716 30078641
    123454 6foo:D (8.2) BS01 ZN ? GO:0003151 ... P11716 30078641
    123455 6fop:A (1.4) BS01 CA 3.2.1.39 GO:0000272 ... A3DD66 29870811
    123456 6fop:A (1.4) BS02 CA 3.2.1.39 GO:0000272 ... A3DD66 29870811
    123457 6fop:A (1.4) BS03 CA 3.2.1.39 GO:0000272 ... A3DD66 29870811
    123458 6fop:A (1.4) BS04 MG 3.2.1.39 GO:0000272 ... A3DD66 29870811
    123459 6fop:A (1.4) BS05 MG 3.2.1.39 GO:0000272 ... A3DD66 29870811
    123460 6fop:A (1.4) BS06 MG 3.2.1.39 GO:0000272 ... A3DD66 29870811
    123461 6for:A () BS01 ZN N/A N/A N/A N/A
    123462 6for:A () BS02 ZN N/A N/A N/A N/A
    123463 6fox:A (1.9) BS02 CA 1.14.13.9 GO:0003824 ... Q84HF5 31372510
    123464 6foy:A (1.65) BS03 CA 1.14.13.9 GO:0003824 ... Q84HF5 31372510
    123465 6fp5:A (2.0) BS01 ZN ? GO:0005634 ... Q960Q9 33638995
    123466 6fp5:B (2.0) BS01 ZN ? GO:0005634 ... Q960Q9 33638995
    123467 6fp6:A (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123468 6fp6:B (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123469 6fp6:C (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123470 6fp6:D (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123471 6fp6:E (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123472 6fp6:F (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123473 6fp6:G (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123474 6fp6:H (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123475 6fp6:I (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123476 6fp6:J (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123477 6fp6:K (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123478 6fp6:L (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123479 6fp6:M (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123480 6fp6:N (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123481 6fp6:O (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123482 6fp6:P (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123483 6fp6:Q (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123484 6fp6:R (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123485 6fp6:S (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123486 6fp6:T (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123487 6fp6:U (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123488 6fp6:V (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123489 6fp6:W (3.0) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30735496
    123490 6fp6:X (3.0) BS01 ZN ? GO:0005507 ... O14618 30735496
    123491 6fpc:A (1.75) BS01 ZN 3.4.24.89 GO:0005576 ... K4ZRC1 29794027
    123492 6fpc:B (1.75) BS01 ZN 3.4.24.89 GO:0005576 ... K4ZRC1 29794027
    123493 6fpc:C (1.75) BS01 ZN 3.4.24.89 GO:0005576 ... K4ZRC1 29794027
    123494 6fpc:D (1.75) BS01 ZN 3.4.24.89 GO:0005576 ... K4ZRC1 29794027
    123495 6fpi:L (1.5) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    123496 6fpi:M (1.5) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    123497 6fpo:L (1.05) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    123498 6fpo:M (1.05) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    123499 6fpu:A (1.36) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 29939431
    123500 6fpw:L (1.35) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    123501 6fpw:M (1.35) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    123502 6fpy:A (2.339) BS01 MG ? N/A P19827 32144206
    123503 6fpy:B (2.339) BS01 MG ? N/A P19827 32144206
    123504 6fqe:A (1.75) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123505 6fqe:A (1.75) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123506 6fqe:B (1.75) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123507 6fqe:B (1.75) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123508 6fqm:B (3.06) BS03 MN 5.6.2.2 GO:0003677 ... P66937 29538767
    123509 6fqm:D (3.06) BS03 MN 5.6.2.2 GO:0003677 ... P66937 29538767
    123510 6fqm:b (3.06) BS03 MN 5.6.2.2 GO:0003677 ... P66937 29538767
    123511 6fqm:d (3.06) BS03 MN 5.6.2.2 GO:0003677 ... P66937 29538767
    123512 6fqs:B (3.11) BS03 MN 5.6.2.2 GO:0003677 ... P66937 29538767
    123513 6fqs:D (3.11) BS03 MN 5.6.2.2 GO:0003677 ... P66937 29538767
    123514 6fr2:A (2.262) BS02 MG 3.1.3.76
    3.3.2.10
    GO:0003824 ... P34913 30059891
    123515 6frd:A (2.2) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    123516 6frd:B (2.2) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    123517 6frk:j (3.7) BS03 ZN N/A GO:0003735 ... N/A 29567807
    123518 6frk:m (3.7) BS02 ZN N/A GO:0003735 ... N/A 29567807
    123519 6frk:v (3.7) BS01 MG ? GO:0005525 ... G1STG2 29567807
    123520 6frk:x (3.7) BS04 MG 3.6.5.4 GO:0003723 ... P61010 29567807
    123521 6frm:A (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123522 6frm:B (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123523 6frm:C (2.2) BS03 TB ? GO:0000166 ... A0A452CSW8 29806881
    123524 6frm:C (2.2) BS04 FE ? GO:0000166 ... A0A452CSW8 29806881
    123525 6frm:D (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123526 6frm:D (2.2) BS03 FE ? GO:0000166 ... A0A452CSW8 29806881
    123527 6frm:E (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123528 6frm:F (2.2) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123529 6frm:G (2.2) BS03 TB ? GO:0000166 ... A0A452CSW8 29806881
    123530 6frm:G (2.2) BS04 FE ? GO:0000166 ... A0A452CSW8 29806881
    123531 6frm:H (2.2) BS03 TB ? GO:0000166 ... A0A452CSW8 29806881
    123532 6frm:H (2.2) BS04 FE ? GO:0000166 ... A0A452CSW8 29806881
    123533 6frn:A (1.74) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123534 6frn:B (1.74) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123535 6frn:C (1.74) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123536 6frn:D (1.74) BS02 TB ? GO:0000166 ... A0A452CSW8 29806881
    123537 6frw:A (1.52) BS01 ZN 2.4.1.10 GO:0009758 ... B2VCC3 30660564
    123538 6frw:A (1.52) BS02 ZN 2.4.1.10 GO:0009758 ... B2VCC3 30660564
    123539 6frw:A (1.52) BS03 ZN 2.4.1.10 GO:0009758 ... B2VCC3 30660564
    123540 6frz:A (1.65) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123541 6frz:A (1.65) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123542 6frz:B (1.65) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123543 6frz:B (1.65) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123544 6fs3:A (1.75) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123545 6fs3:A (1.75) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123546 6fs3:B (1.75) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123547 6fs3:B (1.75) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123548 6fs6:A (2.291) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123549 6fs6:A (2.291) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123550 6fs6:B (2.291) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123551 6fs6:B (2.291) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123552 6fs6:C (2.291) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123553 6fs6:C (2.291) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123554 6fs6:D (2.291) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123555 6fs6:D (2.291) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123556 6fs6:E (2.291) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123557 6fs6:E (2.291) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123558 6fs6:F (2.291) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123559 6fs6:F (2.291) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123560 6fs7:A (1.96) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123561 6fs7:A (1.96) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123562 6fs7:B (1.96) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123563 6fs7:B (1.96) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123564 6fs7:C (1.96) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123565 6fs7:C (1.96) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123566 6fs7:D (1.96) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123567 6fs7:D (1.96) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123568 6fs7:E (1.96) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123569 6fs7:E (1.96) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123570 6fs7:F (1.96) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123571 6fs7:F (1.96) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29941893
    123572 6fs8:A (1.8) BS02 MN 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123573 6fs8:A (1.8) BS03 MN 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123574 6fs8:B (1.8) BS02 MN 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123575 6fs8:B (1.8) BS03 MN 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123576 6fs9:A (2.28) BS01 MN 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123577 6fs9:A (2.28) BS02 MN 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123578 6fsa:A (2.33) BS01 MG ? GO:0000146 ... Q9BE39 30275503
    123579 6fsa:B (2.33) BS01 MG ? GO:0000146 ... Q9BE39 30275503
    123580 6fsb:A (1.8) BS01 MN 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123581 6fsb:A (1.8) BS02 MN 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123582 6fsb:B (1.8) BS01 MG 3.1.-.- GO:0003723 ... Q5V8Z9 29941893
    123583 6fsm:A (1.39) BS01 ZN 3.4.24.27 GO:0004222 ... P43133 29717999
    123584 6fsm:A (1.39) BS02 CA 3.4.24.27 GO:0004222 ... P43133 29717999
    123585 6fsm:A (1.39) BS03 CA 3.4.24.27 GO:0004222 ... P43133 29717999
    123586 6fsm:A (1.39) BS04 CA 3.4.24.27 GO:0004222 ... P43133 29717999
    123587 6fsm:A (1.39) BS05 CA 3.4.24.27 GO:0004222 ... P43133 29717999
    123588 6fsn:A (1.19) BS01 CA ? GO:0003980 ... G0SB58 N/A
    123589 6fso:A (1.449) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 31808981
    123590 6ft0:A (2.1) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123591 6ft0:B (2.1) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123592 6ft0:C (2.1) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123593 6ft0:D (2.1) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123594 6ft6:I (3.9) BS02 ZN ? GO:0000055 ... Q08004 29519915
    123595 6ft6:b (3.9) BS03 MG ? GO:0000054 ... Q02892 29519915
    123596 6ft6:j (3.9) BS03 ZN ? GO:0000448 ... P49166 29519915
    123597 6ft6:p (3.9) BS02 ZN ? GO:0002181 ... P0CX25 29519915
    123598 6ft6:u (3.9) BS02 ZN ? GO:0001671 ... Q07915 29519915
    123599 6fta:A (2.34) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123600 6fta:B (2.34) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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