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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    123201 6fjk:A (2.025) BS03 ZN 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    123202 6fjk:B (2.025) BS03 MG 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    123203 6fjk:B (2.025) BS04 ZN 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    123204 6fjm:A (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 29844393
    123205 6fjm:C (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 29844393
    123206 6fjm:F (2.1) BS02 MG N/A GO:0036211 ... N/A 29844393
    123207 6fjs:A (1.9) BS01 CA 3.4.21.64 GO:0004252 ... P06873 30224955
    123208 6fjs:A (1.9) BS02 CA 3.4.21.64 GO:0004252 ... P06873 30224955
    123209 6fju:A (1.65) BS01 ZN ? GO:0000502 ... E6N8B9 30002364
    123210 6fju:B (1.65) BS01 ZN ? GO:0000502 ... E6N8B9 30002364
    123211 6fk5:A (2.02) BS02 MG 3.1.11.2 GO:0003677 ... Q9K100 30329088
    123212 6fke:A (2.151) BS02 MN 3.1.11.2 GO:0003677 ... Q9K100 30329088
    123213 6fkh:B (4.2) BS02 MG 7.1.2.2 GO:0005524 ... P00825 29748256
    123214 6fki:D (4.3) BS02 MG 7.1.2.2 GO:0005524 ... P00825 29748256
    123215 6fkj:A (2.148) BS02 CA 3.6.5.- GO:0000226 ... P81947 29523799
    123216 6fkj:C (2.148) BS02 CA 3.6.5.- GO:0000226 ... P81947 29523799
    123217 6fkj:F (2.148) BS01 MG N/A GO:0036211 ... N/A 29523799
    123218 6fkl:A (2.098) BS02 CA 3.6.5.- GO:0000226 ... P81947 29523799
    123219 6fkl:C (2.098) BS02 CA 3.6.5.- GO:0000226 ... P81947 29523799
    123220 6fkl:F (2.098) BS01 MG N/A GO:0036211 ... N/A 29523799
    123221 6fkp:A (2.0) BS02 ZN ? N/A Q9UIF9 29529862
    123222 6fkp:A (2.0) BS03 ZN ? N/A Q9UIF9 29529862
    123223 6fkp:B (2.0) BS01 ZN ? N/A Q9UIF9 29529862
    123224 6fkp:B (2.0) BS02 ZN ? N/A Q9UIF9 29529862
    123225 6fkp:C (2.0) BS02 ZN ? N/A Q9UIF9 29529862
    123226 6fkp:C (2.0) BS03 ZN ? N/A Q9UIF9 29529862
    123227 6fkp:D (2.0) BS02 ZN ? N/A Q9UIF9 29529862
    123228 6fkp:D (2.0) BS03 ZN ? N/A Q9UIF9 29529862
    123229 6fkq:A (3.07) BS02 CA ? N/A O95631 29503192
    123230 6fkr:10 (3.2) BS03 MG ? GO:0003735 ... P60493 29526712
    123231 6fkr:10 (3.2) BS04 MG ? GO:0003735 ... P60493 29526712
    123232 6fkr:11 (3.2) BS02 MG ? GO:0003735 ... P60494 29526712
    123233 6fkr:13 (3.2) BS03 MG ? GO:0003735 ... Q5SHQ6 29526712
    123234 6fkr:13 (3.2) BS04 MG ? GO:0003735 ... Q5SHQ6 29526712
    123235 6fkr:14 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 29526712
    123236 6fkr:15 (3.2) BS02 ZN ? GO:0003735 ... P80339 29526712
    123237 6fkr:16 (3.2) BS02 ZN ? GO:0000049 ... P35871 29526712
    123238 6fkr:17 (3.2) BS02 MG ? GO:0003735 ... P80340 29526712
    123239 6fkr:18 (3.2) BS02 MG ? GO:0003735 ... Q5SKU1 29526712
    123240 6fkr:18 (3.2) BS03 MG ? GO:0003735 ... Q5SKU1 29526712
    123241 6fkr:19 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 29526712
    123242 6fkr:1D (3.2) BS02 MG ? GO:0002181 ... P60405 29526712
    123243 6fkr:1D (3.2) BS03 MG ? GO:0002181 ... P60405 29526712
    123244 6fkr:1D (3.2) BS04 MG ? GO:0002181 ... P60405 29526712
    123245 6fkr:1D (3.2) BS05 MG ? GO:0002181 ... P60405 29526712
    123246 6fkr:1D (3.2) BS06 MG ? GO:0002181 ... P60405 29526712
    123247 6fkr:1D (3.2) BS07 MG ? GO:0002181 ... P60405 29526712
    123248 6fkr:1D (3.2) BS08 MG ? GO:0002181 ... P60405 29526712
    123249 6fkr:1D (3.2) BS09 MG ? GO:0002181 ... P60405 29526712
    123250 6fkr:1E (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 29526712
    123251 6fkr:1E (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 29526712
    123252 6fkr:1E (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 29526712
    123253 6fkr:1F (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 29526712
    123254 6fkr:1F (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 29526712
    123255 6fkr:1F (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 29526712
    123256 6fkr:1F (3.2) BS05 MG ? GO:0003735 ... Q5SHN9 29526712
    123257 6fkr:1F (3.2) BS06 MG ? GO:0003735 ... Q5SHN9 29526712
    123258 6fkr:1F (3.2) BS07 MG ? GO:0003735 ... Q5SHN9 29526712
    123259 6fkr:1F (3.2) BS08 MG ? GO:0003735 ... Q5SHN9 29526712
    123260 6fkr:1F (3.2) BS09 MG ? GO:0003735 ... Q5SHN9 29526712
    123261 6fkr:1F (3.2) BS10 MG ? GO:0003735 ... Q5SHN9 29526712
    123262 6fkr:1F (3.2) BS11 MG ? GO:0003735 ... Q5SHN9 29526712
    123263 6fkr:1F (3.2) BS12 MG ? GO:0003735 ... Q5SHN9 29526712
    123264 6fkr:1G (3.2) BS03 MG ? GO:0000049 ... Q5SHQ0 29526712
    123265 6fkr:1G (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 29526712
    123266 6fkr:1G (3.2) BS05 MG ? GO:0000049 ... Q5SHQ0 29526712
    123267 6fkr:1P (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 29526712
    123268 6fkr:1P (3.2) BS03 MG ? GO:0003735 ... Q5SHQ7 29526712
    123269 6fkr:1P (3.2) BS04 MG ? GO:0003735 ... Q5SHQ7 29526712
    123270 6fkr:1Q (3.2) BS03 MG ? GO:0000049 ... P60489 29526712
    123271 6fkr:1Q (3.2) BS04 MG ? GO:0000049 ... P60489 29526712
    123272 6fkr:1Q (3.2) BS05 MG ? GO:0000049 ... P60489 29526712
    123273 6fkr:1R (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 29526712
    123274 6fkr:1R (3.2) BS03 MG ? GO:0003735 ... Q9Z9H5 29526712
    123275 6fkr:1U (3.2) BS02 MG ? GO:0000027 ... P60491 29526712
    123276 6fkr:1U (3.2) BS03 MG ? GO:0000027 ... P60491 29526712
    123277 6fkr:1U (3.2) BS04 MG ? GO:0000027 ... P60491 29526712
    123278 6fkr:1U (3.2) BS05 MG ? GO:0000027 ... P60491 29526712
    123279 6fkr:1U (3.2) BS06 MG ? GO:0000027 ... P60491 29526712
    123280 6fkr:1V (3.2) BS02 MG ? GO:0003723 ... P60492 29526712
    123281 6fkr:1V (3.2) BS03 MG ? GO:0003723 ... P60492 29526712
    123282 6fkr:1V (3.2) BS04 MG ? GO:0003723 ... P60492 29526712
    123283 6fkr:1W (3.2) BS02 MG ? GO:0003735 ... Q5SHP3 29526712
    123284 6fkr:1Y (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 29526712
    123285 6fkr:1b (3.2) BS02 MG ? GO:0003735 ... P80371 29526712
    123286 6fkr:1e (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 29526712
    123287 6fkr:1l (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 29526712
    123288 6fkr:1m (3.2) BS03 MG ? GO:0000049 ... P80377 29526712
    123289 6fkr:1n (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 29526712
    123290 6fkr:1n (3.2) BS03 MG ? GO:0003735 ... P0DOY6 29526712
    123291 6fkr:20 (3.2) BS03 MG ? GO:0003735 ... P60493 29526712
    123292 6fkr:20 (3.2) BS04 MG ? GO:0003735 ... P60493 29526712
    123293 6fkr:23 (3.2) BS03 MG ? GO:0003735 ... Q5SHQ6 29526712
    123294 6fkr:23 (3.2) BS04 MG ? GO:0003735 ... Q5SHQ6 29526712
    123295 6fkr:23 (3.2) BS05 MG ? GO:0003735 ... Q5SHQ6 29526712
    123296 6fkr:24 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 29526712
    123297 6fkr:25 (3.2) BS02 MG ? GO:0003735 ... P80339 29526712
    123298 6fkr:25 (3.2) BS03 ZN ? GO:0003735 ... P80339 29526712
    123299 6fkr:26 (3.2) BS02 ZN ? GO:0000049 ... P35871 29526712
    123300 6fkr:27 (3.2) BS02 MG ? GO:0003735 ... P80340 29526712
    123301 6fkr:28 (3.2) BS02 MG ? GO:0003735 ... Q5SKU1 29526712
    123302 6fkr:29 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 29526712
    123303 6fkr:2D (3.2) BS02 MG ? GO:0002181 ... P60405 29526712
    123304 6fkr:2D (3.2) BS03 MG ? GO:0002181 ... P60405 29526712
    123305 6fkr:2D (3.2) BS04 MG ? GO:0002181 ... P60405 29526712
    123306 6fkr:2D (3.2) BS05 MG ? GO:0002181 ... P60405 29526712
    123307 6fkr:2D (3.2) BS06 MG ? GO:0002181 ... P60405 29526712
    123308 6fkr:2D (3.2) BS07 MG ? GO:0002181 ... P60405 29526712
    123309 6fkr:2D (3.2) BS08 MG ? GO:0002181 ... P60405 29526712
    123310 6fkr:2D (3.2) BS09 MG ? GO:0002181 ... P60405 29526712
    123311 6fkr:2D (3.2) BS10 MG ? GO:0002181 ... P60405 29526712
    123312 6fkr:2D (3.2) BS11 MG ? GO:0002181 ... P60405 29526712
    123313 6fkr:2D (3.2) BS12 MG ? GO:0002181 ... P60405 29526712
    123314 6fkr:2E (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 29526712
    123315 6fkr:2E (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 29526712
    123316 6fkr:2E (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 29526712
    123317 6fkr:2E (3.2) BS05 MG ? GO:0003735 ... Q5SHN8 29526712
    123318 6fkr:2F (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 29526712
    123319 6fkr:2F (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 29526712
    123320 6fkr:2F (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 29526712
    123321 6fkr:2F (3.2) BS05 MG ? GO:0003735 ... Q5SHN9 29526712
    123322 6fkr:2F (3.2) BS06 MG ? GO:0003735 ... Q5SHN9 29526712
    123323 6fkr:2F (3.2) BS07 MG ? GO:0003735 ... Q5SHN9 29526712
    123324 6fkr:2F (3.2) BS08 MG ? GO:0003735 ... Q5SHN9 29526712
    123325 6fkr:2F (3.2) BS09 MG ? GO:0003735 ... Q5SHN9 29526712
    123326 6fkr:2G (3.2) BS03 MG ? GO:0000049 ... Q5SHQ0 29526712
    123327 6fkr:2G (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 29526712
    123328 6fkr:2G (3.2) BS05 MG ? GO:0000049 ... Q5SHQ0 29526712
    123329 6fkr:2P (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 29526712
    123330 6fkr:2Q (3.2) BS03 MG ? GO:0000049 ... P60489 29526712
    123331 6fkr:2Q (3.2) BS04 MG ? GO:0000049 ... P60489 29526712
    123332 6fkr:2Q (3.2) BS05 MG ? GO:0000049 ... P60489 29526712
    123333 6fkr:2R (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 29526712
    123334 6fkr:2R (3.2) BS03 MG ? GO:0003735 ... Q9Z9H5 29526712
    123335 6fkr:2U (3.2) BS02 MG ? GO:0000027 ... P60491 29526712
    123336 6fkr:2U (3.2) BS03 MG ? GO:0000027 ... P60491 29526712
    123337 6fkr:2U (3.2) BS04 MG ? GO:0000027 ... P60491 29526712
    123338 6fkr:2U (3.2) BS05 MG ? GO:0000027 ... P60491 29526712
    123339 6fkr:2V (3.2) BS02 MG ? GO:0003723 ... P60492 29526712
    123340 6fkr:2V (3.2) BS03 MG ? GO:0003723 ... P60492 29526712
    123341 6fkr:2V (3.2) BS04 MG ? GO:0003723 ... P60492 29526712
    123342 6fkr:2X (3.2) BS02 MG ? GO:0000027 ... Q5SHP0 29526712
    123343 6fkr:2Y (3.2) BS02 MG ? GO:0003723 ... Q5SHP9 29526712
    123344 6fkr:2Y (3.2) BS03 ZN ? GO:0003723 ... Q5SHP9 29526712
    123345 6fkr:2b (3.2) BS02 MG ? GO:0003735 ... P80371 29526712
    123346 6fkr:2d (3.2) BS03 MG ? GO:0003723 ... P80373 29526712
    123347 6fkr:2f (3.2) BS02 MG ? GO:0003735 ... Q5SLP8 29526712
    123348 6fkr:2k (3.2) BS02 MG ? GO:0003735 ... P80376 29526712
    123349 6fkr:2l (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 29526712
    123350 6fkr:2m (3.2) BS02 MG ? GO:0000049 ... P80377 29526712
    123351 6fkr:2n (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 29526712
    123352 6fkw:A (1.4) BS01 EU 1.1.2.7
    1.1.2.8
    GO:0005509 ... I0JWN7 29524328
    123353 6fkw:B (1.4) BS01 EU 1.1.2.7
    1.1.2.8
    GO:0005509 ... I0JWN7 29524328
    123354 6fkw:C (1.4) BS01 EU 1.1.2.7
    1.1.2.8
    GO:0005509 ... I0JWN7 29524328
    123355 6fkw:D (1.4) BS01 EU 1.1.2.7
    1.1.2.8
    GO:0005509 ... I0JWN7 29524328
    123356 6fky:A (2.98) BS03 ZN 2.3.1.- GO:0000035 ... Q6DHI5 29494161
    123357 6fky:B (2.98) BS01 ZN 2.3.1.- GO:0000035 ... Q6DHI5 29494161
    123358 6fkz:A (3.3) BS03 ZN 2.3.1.- GO:0000035 ... Q6DHI5 29494161
    123359 6fkz:B (3.3) BS01 ZN 2.3.1.- GO:0000035 ... Q6DHI5 29494161
    123360 6fl1:A (1.6) BS03 ZN N/A GO:0003676 ... N/A N/A
    123361 6fl3:A (2.36) BS03 ZN 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    123362 6fl3:B (2.36) BS03 MG 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    123363 6fl3:B (2.36) BS04 ZN 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    123364 6fl4:A (1.6) BS01 MG 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 30614695
    123365 6fl4:A (1.6) BS02 MG 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 30614695
    123366 6fl4:B (1.6) BS01 MG 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 30614695
    123367 6fl4:B (1.6) BS02 MG 3.6.1.22
    3.6.1.55
    3.6.1.67
    GO:0000210 ... Q9CA40 30614695
    123368 6fl8:A (2.1) BS03 ZN 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    123369 6fl8:B (2.1) BS03 ZN 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    123370 6flg:A (2.5) BS02 ZN 2.3.1.- GO:0000035 ... Q6DHI5 29494161
    123371 6flg:B (2.5) BS01 ZN 2.3.1.- GO:0000035 ... Q6DHI5 29494161
    123372 6flp:D (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 29499136
    123373 6flp:D (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29499136
    123374 6flp:D (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29499136
    123375 6flq:D (3.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 29499136
    123376 6flq:D (3.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29499136
    123377 6flq:D (3.6) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29499136
    123378 6fm1:A (2.35) BS03 MG 6.3.4.25 GO:0000166 ... G3FFN6 33926955
    123379 6fm4:B (2.7) BS03 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    31276392
    123380 6fm4:B (2.7) BS04 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    31276392
    123381 6fm4:D (2.7) BS03 MN 5.6.2.2 GO:0003677 ... P66937
    Q99XG5
    31276392
    123382 6fmn:A (1.36) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 29939431
    123383 6fn8:A (1.55) BS01 ZN ? GO:0005507 ... O14618 30735496
    123384 6fn8:B (1.55) BS01 ZN ? GO:0005507 ... O14618 30735496
    123385 6fnd:A (2.101) BS01 ZN ? N/A B9Q0K5 30148980
    123386 6fnd:A (2.101) BS02 ZN ? N/A B9Q0K5 30148980
    123387 6fnd:B (2.101) BS01 ZN ? N/A B9Q0K5 30148980
    123388 6fnd:B (2.101) BS02 ZN ? N/A B9Q0K5 30148980
    123389 6fnd:C (2.101) BS01 ZN ? N/A B9Q0K5 30148980
    123390 6fnd:C (2.101) BS02 ZN ? N/A B9Q0K5 30148980
    123391 6fnd:D (2.101) BS01 ZN ? N/A B9Q0K5 30148980
    123392 6fnd:D (2.101) BS02 ZN ? N/A B9Q0K5 30148980
    123393 6fnn:A (1.85) BS01 ZN 3.4.19.12 GO:0008233 ... E6N8B9 30002364
    123394 6fnn:B (1.85) BS01 ZN 3.4.19.12 GO:0008233 ... E6N8B9 30002364
    123395 6fno:A (1.95) BS01 ZN ? GO:0008233 ... E6N8B9 30002364
    123396 6fno:B (1.95) BS01 ZN ? GO:0008233 ... E6N8B9 30002364
    123397 6fny:A (2.79) BS01 CA 3.1.6.6 GO:0005737 ... O69787 29458126
    123398 6fny:B (2.79) BS01 CA 3.1.6.6 GO:0005737 ... O69787 29458126
    123399 6fny:C (2.79) BS01 CA 3.1.6.6 GO:0005737 ... O69787 29458126
    123400 6fny:D (2.79) BS01 CA 3.1.6.6 GO:0005737 ... O69787 29458126

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218