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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    123001 6fe5:A (1.52) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    123002 6fe5:A (1.52) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    123003 6fe5:A (1.52) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    123004 6fe7:A (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123005 6fe7:B (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123006 6fe7:C (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123007 6fe7:D (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123008 6feb:A (1.93) BS03 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123009 6feb:B (1.93) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123010 6fee:A () BS01 ZN N/A N/A N/A N/A
    123011 6fef:A () BS01 ZN N/A N/A N/A N/A
    123012 6fef:A () BS02 ZN N/A N/A N/A N/A
    123013 6feg:B (-1.00) BS01 CA ? GO:0000086 ... P0DP23 29463698
    123014 6feg:B (-1.00) BS02 CA ? GO:0000086 ... P0DP23 29463698
    123015 6feh:B (-1.00) BS01 CA ? GO:0000086 ... P0DP23 29463698
    123016 6feh:B (-1.00) BS02 CA ? GO:0000086 ... P0DP23 29463698
    123017 6feh:B (-1.00) BS03 CA ? GO:0000086 ... P0DP23 29463698
    123018 6feh:B (-1.00) BS04 CA ? GO:0000086 ... P0DP23 29463698
    123019 6fei:A () BS01 ZN N/A N/A N/A N/A
    123020 6fei:A () BS02 ZN N/A N/A N/A N/A
    123021 6fei:B () BS01 ZN N/A N/A N/A N/A
    123022 6fei:B () BS02 ZN N/A N/A N/A N/A
    123023 6fet:A (1.88) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123024 6fet:B (1.88) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123025 6fet:C (1.88) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123026 6fet:D (1.88) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    123027 6ff2:A (1.3) BS01 CU1 ? GO:0005507 ... Q2FV63 N/A
    123028 6ff2:A (1.3) BS02 CU1 ? GO:0005507 ... Q2FV63 N/A
    123029 6ff2:B (1.3) BS01 CU1 ? GO:0005507 ... Q2FV63 N/A
    123030 6ff2:B (1.3) BS02 CU1 ? GO:0005507 ... Q2FV63 N/A
    123031 6ff4:P (3.4) BS03 ZN ? GO:0000398 ... Q9NW64 29361316
    123032 6ff4:P (3.4) BS04 ZN ? GO:0000398 ... Q9NW64 29361316
    123033 6ff4:P (3.4) BS05 ZN ? GO:0000398 ... Q9NW64 29361316
    123034 6ff4:Q (3.4) BS02 ZN ? GO:0000398 ... P41223 29361316
    123035 6ff4:Q (3.4) BS03 ZN ? GO:0000398 ... P41223 29361316
    123036 6ff4:Q (3.4) BS04 ZN ? GO:0000398 ... P41223 29361316
    123037 6ff4:t (3.4) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 29361316
    123038 6ff4:y (3.4) BS03 ZN ? GO:0000398 ... Q7RTV0 29361316
    123039 6ff4:y (3.4) BS04 ZN ? GO:0000398 ... Q7RTV0 29361316
    123040 6ff4:y (3.4) BS05 ZN ? GO:0000398 ... Q7RTV0 29361316
    123041 6ff7:Q (4.5) BS02 ZN ? GO:0000398 ... P41223 29361316
    123042 6ff7:Q (4.5) BS03 ZN ? GO:0000398 ... P41223 29361316
    123043 6ff8:A (2.13) BS02 MG ? GO:0003924 ... Q13637 31552791
    123044 6ff8:B (2.13) BS02 MG ? GO:0003924 ... Q13637 31552791
    123045 6ff9:A (2.0) BS01 ZN ? GO:0000976 ... P04637 29652801
    123046 6ff9:B (2.0) BS01 ZN ? GO:0000976 ... P04637 29652801
    123047 6ff9:C (2.0) BS01 ZN ? GO:0000976 ... P04637 29652801
    123048 6ff9:D (2.0) BS01 ZN ? GO:0000976 ... P04637 29652801
    123049 6ffw:A (1.495) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123050 6ffw:A (1.495) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123051 6ffw:B (1.495) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123052 6ffw:B (1.495) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    123053 6ffx:A (2.5) BS01 ZN N/A GO:0008270 ... N/A 29384657
    123054 6ffx:A (2.5) BS02 ZN N/A GO:0008270 ... N/A 29384657
    123055 6ffx:B (2.5) BS01 ZN N/A GO:0008270 ... N/A 29384657
    123056 6ffx:B (2.5) BS02 ZN N/A GO:0008270 ... N/A 29384657
    123057 6ffx:C (2.5) BS01 ZN N/A GO:0008270 ... N/A 29384657
    123058 6ffx:C (2.5) BS02 ZN N/A GO:0008270 ... N/A 29384657
    123059 6ffx:D (2.5) BS01 ZN N/A GO:0008270 ... N/A 29384657
    123060 6ffx:D (2.5) BS02 ZN N/A GO:0008270 ... N/A 29384657
    123061 6ffz:A (1.71) BS01 ZN N/A GO:0008270 ... N/A 29384657
    123062 6ffz:A (1.71) BS02 ZN N/A GO:0008270 ... N/A 29384657
    123063 6ffz:B (1.71) BS01 ZN N/A GO:0008270 ... N/A 29384657
    123064 6ffz:B (1.71) BS02 ZN N/A GO:0008270 ... N/A 29384657
    123065 6ffz:C (1.71) BS01 ZN N/A GO:0008270 ... N/A 29384657
    123066 6ffz:C (1.71) BS02 ZN N/A GO:0008270 ... N/A 29384657
    123067 6ffz:D (1.71) BS01 ZN N/A GO:0008270 ... N/A 29384657
    123068 6ffz:D (1.71) BS02 ZN N/A GO:0008270 ... N/A 29384657
    123069 6fg0:A (1.74) BS01 ZN N/A GO:0008270 ... N/A N/A
    123070 6fg0:A (1.74) BS02 ZN N/A GO:0008270 ... N/A N/A
    123071 6fg0:B (1.74) BS01 ZN N/A GO:0008270 ... N/A N/A
    123072 6fg0:B (1.74) BS02 ZN N/A GO:0008270 ... N/A N/A
    123073 6fg0:C (1.74) BS01 ZN N/A GO:0008270 ... N/A N/A
    123074 6fg0:C (1.74) BS02 ZN N/A GO:0008270 ... N/A N/A
    123075 6fg0:D (1.74) BS01 ZN N/A GO:0008270 ... N/A N/A
    123076 6fg0:D (1.74) BS02 ZN N/A GO:0008270 ... N/A N/A
    123077 6fg3:A (7.3) BS01 ZN ? GO:0003151 ... P11716 30078641
    123078 6fg3:A (7.3) BS02 CA ? GO:0003151 ... P11716 30078641
    123079 6fg3:B (7.3) BS01 ZN ? GO:0003151 ... P11716 30078641
    123080 6fg3:B (7.3) BS02 CA ? GO:0003151 ... P11716 30078641
    123081 6fg3:C (7.3) BS01 ZN ? GO:0003151 ... P11716 30078641
    123082 6fg3:C (7.3) BS02 CA ? GO:0003151 ... P11716 30078641
    123083 6fg3:D (7.3) BS01 ZN ? GO:0003151 ... P11716 30078641
    123084 6fg3:D (7.3) BS02 CA ? GO:0003151 ... P11716 30078641
    123085 6fg5:A (2.35) BS01 ZN N/A GO:0004114 ... N/A N/A
    123086 6fg5:B (2.35) BS01 ZN N/A GO:0004114 ... N/A N/A
    123087 6fga:A (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123088 6fga:A (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123089 6fga:B (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123090 6fga:B (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123091 6fga:C (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123092 6fga:C (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123093 6fga:D (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123094 6fga:D (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123095 6fga:E (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123096 6fga:E (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123097 6fga:F (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123098 6fga:F (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123099 6fga:G (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123100 6fga:G (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123101 6fga:H (2.82) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123102 6fga:H (2.82) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 31160341
    123103 6fgn:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472
    Q9H3D4    		 30099987
    123104 6fgn:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472
    Q9H3D4    		 30099987
    123105 6fgn:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472
    Q9H3D4    		 30099987
    123106 6fgo:E (2.5) BS01 CA ? GO:0019865 ... A0A0U3TLJ6 29886013
    123107 6fgo:F (2.5) BS01 CA ? GO:0019865 ... A0A0U3TLJ6 29886013
    123108 6fgo:G (2.5) BS01 CA ? GO:0019865 ... A0A0U3TLJ6 29886013
    123109 6fgo:H (2.5) BS01 CA ? GO:0019865 ... A0A0U3TLJ6 29886013
    123110 6fgs:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... O15350
    Q09472    		 30099987
    123111 6fgs:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... O15350
    Q09472    		 30099987
    123112 6fgs:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... O15350
    Q09472    		 30099987
    123113 6fgx:B (2.9) BS01 MG 2.7.6.5 GO:0008728 ... W8U368 29391580
    123114 6fhb:A (1.75) BS01 MG 2.7.11.1 GO:0004672 ... P53355 N/A
    123115 6fhg:A (1.95) BS01 ZN 3.5.1.28 GO:0003824 ... A0A088FLK9 30718611
    123116 6fhg:B (1.95) BS01 ZN 3.5.1.28 GO:0003824 ... A0A088FLK9 30718611
    123117 6fhj:A (2.04) BS01 CA ? GO:0000272 ... A0A3F2YM16 N/A
    123118 6fhj:A (2.04) BS02 CA ? GO:0000272 ... A0A3F2YM16 N/A
    123119 6fhj:A (2.04) BS03 CA ? GO:0000272 ... A0A3F2YM16 N/A
    123120 6fhj:A (2.04) BS04 CA ? GO:0000272 ... A0A3F2YM16 N/A
    123121 6fhj:A (2.04) BS05 CA ? GO:0000272 ... A0A3F2YM16 N/A
    123122 6fhn:A (2.0) BS01 CA ? GO:0000272 ... A0A3F2YM17 N/A
    123123 6fhn:A (2.0) BS02 CA ? GO:0000272 ... A0A3F2YM17 N/A
    123124 6fhn:A (2.0) BS03 CA ? GO:0000272 ... A0A3F2YM17 N/A
    123125 6fhn:A (2.0) BS04 CA ? GO:0000272 ... A0A3F2YM17 N/A
    123126 6fhn:A (2.0) BS05 CA ? GO:0000272 ... A0A3F2YM17 N/A
    123127 6fhq:A (1.95) BS01 ZN ? N/A Q9UIF8 29529862
    123128 6fhq:A (1.95) BS02 ZN ? N/A Q9UIF8 29529862
    123129 6fhq:B (1.95) BS01 ZN ? N/A Q9UIF8 29529862
    123130 6fhq:B (1.95) BS02 ZN ? N/A Q9UIF8 29529862
    123131 6fhu:A (2.0) BS02 ZN ? N/A Q9UIF9 29529862
    123132 6fhu:A (2.0) BS03 ZN ? N/A Q9UIF9 29529862
    123133 6fhu:B (2.0) BS02 ZN ? N/A Q9UIF9 29529862
    123134 6fhu:B (2.0) BS03 ZN ? N/A Q9UIF9 29529862
    123135 6fhu:C (2.0) BS01 ZN ? N/A Q9UIF9 29529862
    123136 6fhu:C (2.0) BS02 ZN ? N/A Q9UIF9 29529862
    123137 6fhu:D (2.0) BS02 ZN ? N/A Q9UIF9 29529862
    123138 6fhu:D (2.0) BS03 ZN ? N/A Q9UIF9 29529862
    123139 6fi0:A (1.9) BS01 ZN ? N/A Q9UIF9 29529862
    123140 6fi0:A (1.9) BS02 ZN ? N/A Q9UIF9 29529862
    123141 6fi0:B (1.9) BS01 ZN ? N/A Q9UIF9 29529862
    123142 6fi0:B (1.9) BS02 ZN ? N/A Q9UIF9 29529862
    123143 6fi0:C (1.9) BS01 ZN ? N/A Q9UIF9 29529862
    123144 6fi0:C (1.9) BS02 ZN ? N/A Q9UIF9 29529862
    123145 6fi0:D (1.9) BS01 ZN ? N/A Q9UIF9 29529862
    123146 6fi0:D (1.9) BS02 ZN ? N/A Q9UIF9 29529862
    123147 6fi1:A (2.7) BS01 ZN ? N/A Q9UIF8 29529862
    123148 6fi1:A (2.7) BS02 ZN ? N/A Q9UIF8 29529862
    123149 6fi1:B (2.7) BS01 ZN ? N/A Q9UIF8 29529862
    123150 6fi1:B (2.7) BS02 ZN ? N/A Q9UIF8 29529862
    123151 6fi8:A (2.598) BS04 CA ? GO:0003677 ... Q933Z0 29635476
    123152 6fi8:A (2.598) BS05 CA ? GO:0003677 ... Q933Z0 29635476
    123153 6fi8:G (2.598) BS05 CA ? GO:0003677 ... Q933Z0 29635476
    123154 6fi8:G (2.598) BS06 CA ? GO:0003677 ... Q933Z0 29635476
    123155 6fi8:H (2.598) BS04 CA ? GO:0003677 ... Q933Z0 29635476
    123156 6fi9:A (2.8) BS01 ZN ? GO:0003677 ... A2RNS2 30753183
    123157 6fi9:A (2.8) BS02 ZN ? GO:0003677 ... A2RNS2 30753183
    123158 6fi9:B (2.8) BS01 ZN ? GO:0003677 ... A2RNS2 30753183
    123159 6fi9:B (2.8) BS02 ZN ? GO:0003677 ... A2RNS2 30753183
    123160 6fi9:C (2.8) BS01 ZN ? GO:0003677 ... A2RNS2 30753183
    123161 6fi9:C (2.8) BS02 ZN ? GO:0003677 ... A2RNS2 30753183
    123162 6fi9:D (2.8) BS01 ZN ? GO:0003677 ... A2RNS2 30753183
    123163 6fi9:D (2.8) BS02 ZN ? GO:0003677 ... A2RNS2 30753183
    123164 6fi9:E (2.8) BS01 ZN ? GO:0003677 ... A2RNS2 30753183
    123165 6fi9:E (2.8) BS02 ZN ? GO:0003677 ... A2RNS2 30753183
    123166 6fi9:F (2.8) BS01 ZN ? GO:0003677 ... A2RNS2 30753183
    123167 6fi9:G (2.8) BS01 ZN ? GO:0003677 ... A2RNS2 30753183
    123168 6fi9:H (2.8) BS01 ZN ? GO:0003677 ... A2RNS2 30753183
    123169 6fid:A (2.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 29979188
    123170 6fie:B (1.51) BS01 CA ? GO:0005499 ... P05937 30289411
    123171 6fie:B (1.51) BS02 CA ? GO:0005499 ... P05937 30289411
    123172 6fie:B (1.51) BS03 CA ? GO:0005499 ... P05937 30289411
    123173 6fie:B (1.51) BS04 CA ? GO:0005499 ... P05937 30289411
    123174 6fig:A (1.48) BS01 CA 2.7.11.1 GO:0004714 ... Q9SR05 29968676
    123175 6fig:A (1.48) BS02 CA 2.7.11.1 GO:0004714 ... Q9SR05 29968676
    123176 6fig:B (1.48) BS01 CA 2.7.11.1 GO:0004714 ... Q9SR05 29968676
    123177 6fig:B (1.48) BS02 CA 2.7.11.1 GO:0004714 ... Q9SR05 29968676
    123178 6fih:A (1.08) BS01 CA 2.7.11.1 GO:0004714 ... Q3E8W4 29968676
    123179 6fih:A (1.08) BS02 CA 2.7.11.1 GO:0004714 ... Q3E8W4 29968676
    123180 6fii:A (2.405) BS02 CA 3.6.5.- GO:0000226 ... P81947 29844393
    123181 6fii:C (2.405) BS02 CA 3.6.5.- GO:0000226 ... P81947 29844393
    123182 6fij:B (2.77) BS01 MG 2.3.1.- GO:0004315 ... Q6DQW3 29610486
    123183 6fir:A (2.5) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 30798051
    123184 6fis:A (2.3) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 30798051
    123185 6fiu:A (2.5) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 30798051
    123186 6fiw:A (2.2) BS01 MG 2.7.1.77
    3.1.3.5
    3.1.3.99    		 GO:0000255 ... P49902 30798051
    123187 6fj2:A (1.43) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 29979188
    123188 6fj2:A (1.43) BS02 CA 3.4.24.27 GO:0004222 ... P00800 29979188
    123189 6fj2:A (1.43) BS03 CA 3.4.24.27 GO:0004222 ... P00800 29979188
    123190 6fj2:A (1.43) BS04 CA 3.4.24.27 GO:0004222 ... P00800 29979188
    123191 6fj2:A (1.43) BS05 CA 3.4.24.27 GO:0004222 ... P00800 29979188
    123192 6fj5:A (2.051) BS03 ZN ? GO:0000976 ... P04637 30057026
    123193 6fj5:B (2.051) BS03 ZN ? GO:0000976 ... P04637 30057026
    123194 6fj5:C (2.051) BS03 ZN ? GO:0000976 ... P04637 30057026
    123195 6fj5:D (2.051) BS03 ZN ? GO:0000976 ... P04637 30057026
    123196 6fja:A (2.2) BS01 CU 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    123197 6fjf:A (2.402) BS02 CA 3.6.5.- GO:0000226 ... P81947 29844393
    123198 6fjf:C (2.402) BS02 CA 3.6.5.- GO:0000226 ... P81947 29844393
    123199 6fji:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30639924
    123200 6fjj:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30639924
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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