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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    122601 6f33:B (3.0) BS04 CA 3.1.4.1
    3.6.1.9
    GO:0003676 ... P97675 30022031
    122602 6f39:A (5.801) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122603 6f39:A (5.801) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122604 6f39:A (5.801) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122605 6f39:B (5.801) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122606 6f39:B (5.801) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122607 6f39:B (5.801) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122608 6f3b:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 29962205
    122609 6f3b:B (1.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 29962205
    122610 6f3f:A (2.41796) BS02 MG 2.7.10.2 GO:0004672 ... P05480 29234112
    122611 6f3h:A (2.703) BS02 MG ? GO:0000175 ... Q6FJE0 29311576
    122612 6f3h:B (2.703) BS02 MG ? GO:0000175 ... Q6FJE0 29311576
    122613 6f3k:A (4.1) BS01 ZN 3.4.11.- GO:0004177 ... O59196 31217444
    122614 6f3k:A (4.1) BS02 ZN 3.4.11.- GO:0004177 ... O59196 31217444
    122615 6f3m:A (1.6) BS03 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122616 6f3m:A (1.6) BS04 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122617 6f3m:B (1.6) BS04 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122618 6f3m:B (1.6) BS05 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122619 6f3m:C (1.6) BS03 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122620 6f3m:C (1.6) BS04 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122621 6f3m:D (1.6) BS04 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122622 6f3m:D (1.6) BS05 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122623 6f3n:A (1.85) BS01 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122624 6f3n:A (1.85) BS02 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122625 6f3n:B (1.85) BS02 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122626 6f3n:B (1.85) BS03 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122627 6f3n:C (1.85) BS01 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122628 6f3n:C (1.85) BS02 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122629 6f3n:D (1.85) BS02 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122630 6f3n:D (1.85) BS03 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122631 6f3o:A (1.75) BS01 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122632 6f3o:A (1.75) BS04 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122633 6f3o:B (1.75) BS02 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122634 6f3o:C (1.75) BS01 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122635 6f3o:D (1.75) BS02 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122636 6f3o:D (1.75) BS05 ZN 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122637 6f3p:A (1.35) BS03 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122638 6f3p:C (1.35) BS03 K 3.13.2.1 GO:0004013 ... Q9I685 30054521
    122639 6f40:A (3.7) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 29345638
    122640 6f40:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 29345638
    122641 6f40:B (3.7) BS02 ZN 2.7.7.6 GO:0000428 ... P22276 29345638
    122642 6f40:I (3.7) BS01 ZN ? GO:0000428 ... Q04307 29345638
    122643 6f40:J (3.7) BS01 ZN ? GO:0000428 ... P22139 29345638
    122644 6f41:A (4.3) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 29345638
    122645 6f41:A (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... P04051 29345638
    122646 6f41:B (4.3) BS02 ZN 2.7.7.6 GO:0000428 ... P22276 29345638
    122647 6f41:I (4.3) BS01 ZN ? GO:0000428 ... Q04307 29345638
    122648 6f41:J (4.3) BS01 ZN ? GO:0000428 ... P22139 29345638
    122649 6f41:L (4.3) BS01 ZN ? GO:0000428 ... P40422 29345638
    122650 6f42:A (5.5) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 29345638
    122651 6f42:B (5.5) BS01 ZN 2.7.7.6 GO:0000428 ... P22276 29345638
    122652 6f42:I (5.5) BS01 ZN ? GO:0000428 ... Q04307 29345638
    122653 6f42:J (5.5) BS01 ZN ? GO:0000428 ... P22139 29345638
    122654 6f42:L (5.5) BS01 ZN ? GO:0000428 ... P40422 29345638
    122655 6f42:V (5.5) BS03 ZN ? GO:0000126 ... P29056 29345638
    122656 6f44:A (4.2) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 29345638
    122657 6f44:A (4.2) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 29345638
    122658 6f44:B (4.2) BS01 ZN 2.7.7.6 GO:0000428 ... P22276 29345638
    122659 6f44:L (4.2) BS01 ZN ? GO:0000428 ... P40422 29345638
    122660 6f44:V (4.2) BS03 ZN ? GO:0000126 ... P29056 29345638
    122661 6f45:A (1.70356) BS01 MG ? N/A M1EAS5 30244968
    122662 6f45:B (1.70356) BS01 MG ? N/A M1EAS5 30244968
    122663 6f47:A (1.35) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPK1 29540745
    122664 6f4n:A (2.541) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29563586
    122665 6f4n:B (2.541) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29563586
    122666 6f4o:A (1.28) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29563586
    122667 6f4p:A (1.45) BS02 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29563586
    122668 6f4q:A (1.12) BS02 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29563586
    122669 6f4r:A (1.3) BS02 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29563586
    122670 6f4s:A (1.461) BS02 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29563586
    122671 6f4t:A (1.22) BS02 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29563586
    122672 6f56:A (1.9402) BS02 MG 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 31423787
    122673 6f56:B (1.9402) BS02 MG 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 31423787
    122674 6f56:C (1.9402) BS02 MG 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 31423787
    122675 6f56:D (1.9402) BS02 MG 2.3.1.-
    2.3.1.97
    GO:0004379 ... P30419 31423787
    122676 6f5k:A (1.62) BS02 CU 1.10.3.2 GO:0005507 ... G2QG31 30395580
    122677 6f5k:A (1.62) BS03 CU 1.10.3.2 GO:0005507 ... G2QG31 30395580
    122678 6f5k:A (1.62) BS04 CU 1.10.3.2 GO:0005507 ... G2QG31 30395580
    122679 6f5k:A (1.62) BS05 CU 1.10.3.2 GO:0005507 ... G2QG31 30395580
    122680 6f5l:A (1.63) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    122681 6f5l:A (1.63) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    122682 6f5l:A (1.63) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    122683 6f5p:A (4.14) BS03 MG 3.1.-.- GO:0003723 ... Q9IMP5 29910112
    122684 6f5p:D (4.14) BS01 MG 3.1.-.- GO:0003723 ... Q9IMP5 29910112
    122685 6f5q:A (1.43) BS01 ZN 1.14.11.66 N/A Q6B0I6 N/A
    122686 6f5r:A (1.607) BS01 ZN 1.14.11.66 N/A Q6B0I6 N/A
    122687 6f5s:A (1.48) BS01 ZN 1.14.11.66 N/A Q6B0I6 N/A
    122688 6f5t:A (1.58) BS01 ZN 1.14.11.66 N/A Q6B0I6 N/A
    122689 6f65:A (1.948) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122690 6f65:A (1.948) BS02 MN3 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122691 6f6b:A (2.009) BS01 FE2 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122692 6f6b:A (2.009) BS02 MN 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122693 6f6c:A (1.766) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122694 6f6c:A (1.766) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122695 6f6c:B (1.766) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122696 6f6c:B (1.766) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122697 6f6d:A (1.81811) BS02 FE 1.14.11.68 N/A O15054 29220567
    122698 6f6d:A (1.81811) BS03 ZN 1.14.11.68 N/A O15054 29220567
    122699 6f6e:A (1.627) BS01 FE2 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122700 6f6e:A (1.627) BS02 MN 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122701 6f6e:B (1.627) BS01 FE2 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122702 6f6e:B (1.627) BS02 MN 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122703 6f6f:A (1.788) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122704 6f6f:A (1.788) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122705 6f6g:A (1.991) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122706 6f6g:A (1.991) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122707 6f6g:B (1.991) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122708 6f6g:B (1.991) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122709 6f6h:A (1.764) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122710 6f6h:A (1.764) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122711 6f6h:B (1.764) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122712 6f6h:B (1.764) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122713 6f6j:A (2.0) BS01 FE 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122714 6f6j:B (2.0) BS01 FE 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122715 6f6j:C (2.0) BS01 FE 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122716 6f6j:D (2.0) BS01 FE 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122717 6f6k:A (1.982) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122718 6f6k:A (1.982) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122719 6f6k:B (1.982) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122720 6f6k:B (1.982) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 29946980
    122721 6f6l:A (1.904) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122722 6f6l:A (1.904) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122723 6f6l:B (1.904) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122724 6f6l:B (1.904) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122725 6f6m:A (1.393) BS01 FE2 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122726 6f6m:A (1.393) BS02 MN 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122727 6f6m:B (1.393) BS01 FE2 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122728 6f6m:B (1.393) BS02 MN 1.17.4.1 GO:0009263 ... Q5KW80 30689052
    122729 6f6q:A (1.79) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    122730 6f6q:A (1.79) BS02 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122731 6f6q:A (1.79) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122732 6f6q:A (1.79) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122733 6f6q:A (1.79) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122734 6f6q:A (1.79) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122735 6f6u:A (1.828) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122736 6f6u:B (1.828) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122737 6f6w:D (3.81) BS01 ZN 2.7.7.6 GO:0000287 ... A0QS66 30478083
    122738 6f6w:D (3.81) BS02 ZN 2.7.7.6 GO:0000287 ... A0QS66 30478083
    122739 6f6w:D (3.81) BS03 MG 2.7.7.6 GO:0000287 ... A0QS66 30478083
    122740 6f75:A (1.89) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    122741 6f75:A (1.89) BS02 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122742 6f75:A (1.89) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122743 6f75:A (1.89) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122744 6f75:A (1.89) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122745 6f76:A (2.2) BS01 MG 3.6.5.2 GO:0003924 ... P01116 29989546
    122746 6f76:B (2.2) BS01 MG 3.6.5.2 GO:0003924 ... P01116 29989546
    122747 6f76:C (2.2) BS01 MG 3.6.5.2 GO:0003924 ... P01116 29989546
    122748 6f76:D (2.2) BS02 MG 3.6.5.2 GO:0003924 ... P01116 29989546
    122749 6f76:E (2.2) BS01 MG 3.6.5.2 GO:0003924 ... P01116 29989546
    122750 6f76:F (2.2) BS01 MG 3.6.5.2 GO:0003924 ... P01116 29989546
    122751 6f79:A (1.9) BS01 ZN 3.4.17.18 GO:0004181 ... P29068 N/A
    122752 6f79:A (1.9) BS02 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122753 6f79:A (1.9) BS03 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122754 6f79:A (1.9) BS04 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122755 6f79:A (1.9) BS05 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122756 6f79:A (1.9) BS07 CA 3.4.17.18 GO:0004181 ... P29068 N/A
    122757 6f7b:A (2.0) BS02 MG 2.7.11.1 GO:0004672 ... O43683 30429199
    122758 6f7c:A (2.002) BS02 CA 3.6.5.- GO:0000226 ... P81947 31655259
    122759 6f7c:C (2.002) BS02 CA 3.6.5.- GO:0000226 ... P81947 31655259
    122760 6f7c:F (2.002) BS02 MG N/A GO:0036211 ... N/A 31655259
    122761 6f7i:A (2.43) BS02 MG 3.4.22.- GO:0004197 ... Q9UDY8 30692685
    122762 6f7i:A (2.43) BS03 MG 3.4.22.- GO:0004197 ... Q9UDY8 30692685
    122763 6f7l:B (2.5) BS02 CA ? GO:0000166 ... Q83X90 30266997
    122764 6f8b:A (1.3) BS01 CA 3.4.24.26 GO:0004222 ... P14756 29485268
    122765 6f8b:A (1.3) BS02 ZN 3.4.24.26 GO:0004222 ... P14756 29485268
    122766 6f8r:A (1.826) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 29652483
    122767 6f8r:A (1.826) BS03 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122768 6f8r:B (1.826) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122769 6f8t:A (1.8) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122770 6f8t:A (1.8) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 29652483
    122771 6f8t:A (1.8) BS03 MG 3.1.4.53 GO:0004114 ... Q08499 29652483
    122772 6f8t:B (1.8) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122773 6f8u:A (2.1) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122774 6f8u:A (2.1) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 29652483
    122775 6f8u:B (2.1) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122776 6f8v:A (1.85) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122777 6f8v:A (1.85) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 29652483
    122778 6f8v:B (1.85) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122779 6f8w:A (1.601) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122780 6f8w:B (1.601) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122781 6f8w:B (1.601) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 29652483
    122782 6f8x:A (1.95) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122783 6f8x:A (1.95) BS02 MG 3.1.4.53 GO:0004114 ... Q08499 29652483
    122784 6f8x:B (1.95) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29652483
    122785 6f8z:A (2.5) BS01 CA ? GO:0005975 ... Q8A325 29717710
    122786 6f8z:B (2.5) BS01 CA ? GO:0005975 ... Q8A325 29717710
    122787 6f8z:C (2.5) BS01 CA ? GO:0005975 ... Q8A325 29717710
    122788 6f90:A (2.4) BS01 CA ? GO:0005975 ... Q8A325 29717710
    122789 6f90:B (2.4) BS01 CA ? GO:0005975 ... Q8A325 29717710
    122790 6f90:C (2.4) BS01 CA ? GO:0005975 ... Q8A325 29717710
    122791 6f91:A (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122792 6f91:B (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122793 6f91:C (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122794 6f91:D (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122795 6f91:E (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122796 6f91:F (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122797 6f91:G (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122798 6f91:H (1.8) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122799 6f92:A (1.9) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710
    122800 6f92:B (1.9) BS01 CA ? GO:0000224 ... Q8A0Q6 29717710

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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