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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    122401 6ezj:B (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122402 6ezj:B (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122403 6ezj:C (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122404 6ezj:C (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122405 6ezj:D (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122406 6ezj:D (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122407 6ezj:E (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122408 6ezj:E (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122409 6ezj:F (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122410 6ezj:F (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122411 6ezj:G (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122412 6ezj:G (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122413 6ezj:H (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122414 6ezj:H (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122415 6ezj:I (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122416 6ezj:I (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122417 6ezj:J (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122418 6ezj:J (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122419 6ezj:K (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122420 6ezj:K (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122421 6ezj:L (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122422 6ezj:L (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122423 6ezj:M (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122424 6ezj:M (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122425 6ezj:N (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122426 6ezj:N (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122427 6ezj:O (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122428 6ezj:O (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122429 6ezj:P (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122430 6ezj:P (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122431 6ezj:Q (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122432 6ezj:Q (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122433 6ezj:R (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122434 6ezj:R (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122435 6ezj:S (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122436 6ezj:S (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122437 6ezj:T (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122438 6ezj:T (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122439 6ezj:U (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122440 6ezj:U (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122441 6ezj:V (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122442 6ezj:V (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122443 6ezj:W (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122444 6ezj:W (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122445 6ezj:X (3.1) BS02 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122446 6ezj:X (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122447 6ezm:A (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122448 6ezm:A (3.2) BS03 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122449 6ezm:B (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122450 6ezm:B (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122451 6ezm:C (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122452 6ezm:C (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122453 6ezm:D (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122454 6ezm:D (3.2) BS03 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122455 6ezm:E (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122456 6ezm:E (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122457 6ezm:F (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122458 6ezm:F (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122459 6ezm:G (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122460 6ezm:G (3.2) BS03 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122461 6ezm:H (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122462 6ezm:H (3.2) BS03 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122463 6ezm:I (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122464 6ezm:I (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122465 6ezm:J (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122466 6ezm:J (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122467 6ezm:K (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122468 6ezm:K (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122469 6ezm:L (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122470 6ezm:L (3.2) BS05 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122471 6ezm:M (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122472 6ezm:M (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122473 6ezm:N (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122474 6ezm:N (3.2) BS03 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122475 6ezm:O (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122476 6ezm:O (3.2) BS03 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122477 6ezm:P (3.2) BS03 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122478 6ezm:P (3.2) BS05 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122479 6ezm:Q (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122480 6ezm:Q (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122481 6ezm:R (3.2) BS03 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122482 6ezm:R (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122483 6ezm:S (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122484 6ezm:S (3.2) BS05 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122485 6ezm:T (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122486 6ezm:T (3.2) BS05 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122487 6ezm:U (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122488 6ezm:U (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122489 6ezm:V (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122490 6ezm:V (3.2) BS05 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122491 6ezm:W (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122492 6ezm:W (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122493 6ezm:X (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122494 6ezm:X (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    122495 6ezu:A (2.04) BS01 ZN N/A GO:0004114 ... N/A N/A
    122496 6ezu:B (2.04) BS01 ZN N/A GO:0004114 ... N/A N/A
    122497 6ezz:A (1.8) BS01 CU 1.4.3.21 GO:0005507 ... P46883 30110143
    122498 6ezz:A (1.8) BS02 CA 1.4.3.21 GO:0005507 ... P46883 30110143
    122499 6ezz:B (1.8) BS01 CU 1.4.3.21 GO:0005507 ... P46883 30110143
    122500 6ezz:B (1.8) BS02 CA 1.4.3.21 GO:0005507 ... P46883 30110143
    122501 6f06:A (2.02) BS02 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122502 6f06:A (2.02) BS03 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122503 6f06:A (2.02) BS04 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122504 6f06:A (2.02) BS05 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122505 6f06:A (2.02) BS06 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122506 6f06:A (2.02) BS07 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122507 6f06:B (2.02) BS02 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122508 6f06:B (2.02) BS03 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122509 6f06:B (2.02) BS04 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122510 6f06:B (2.02) BS05 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122511 6f06:B (2.02) BS06 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122512 6f06:B (2.02) BS07 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122513 6f06:B (2.02) BS08 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122514 6f06:B (2.02) BS09 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    122515 6f07:B (3.6) BS01 ZN ? GO:0000775 ... P40969 29212814
    122516 6f07:B (3.6) BS02 ZN ? GO:0000775 ... P40969 29212814
    122517 6f0w:A (1.301) BS02 MN 1.14.11.29 GO:0005506 ... I6QVT6 30519597
    122518 6f1c:A (4.2) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122519 6f1c:A (4.2) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122520 6f1c:A (4.2) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122521 6f1c:B (4.2) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122522 6f1c:B (4.2) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122523 6f1c:B (4.2) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122524 6f1c:C (4.2) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122525 6f1c:C (4.2) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122526 6f1c:C (4.2) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122527 6f1c:D (4.2) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122528 6f1c:D (4.2) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122529 6f1c:D (4.2) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122530 6f1d:A (1.95) BS01 CA 3.4.21.41 N/A P00736 29311313
    122531 6f1h:A (4.5) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122532 6f1h:A (4.5) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122533 6f1h:A (4.5) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122534 6f1h:B (4.5) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122535 6f1h:B (4.5) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122536 6f1h:B (4.5) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122537 6f1h:C (4.5) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122538 6f1h:C (4.5) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122539 6f1h:C (4.5) BS04 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    122540 6f1h:D (4.5) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122541 6f1h:D (4.5) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    122542 6f1j:B (1.25) BS01 ZN 3.2.1.55 GO:0046373 ... A0A2H5BN17 30084398
    122543 6f1p:A (1.12) BS04 NA 3.2.1.17 GO:0003796 ... P00698 29717719
    122544 6f1q:A (2.3) BS01 CU 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    122545 6f1q:A (2.3) BS02 CU 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    122546 6f1r:A (1.1) BS03 NA 3.2.1.17 GO:0003796 ... P00698 29717719
    122547 6f28:A (2.4) BS02 ZN ? GO:0015276 ... P42264 29451794
    122548 6f28:B (2.4) BS01 ZN ? GO:0015276 ... P42264 29451794
    122549 6f28:B (2.4) BS02 ZN ? GO:0015276 ... P42264 29451794
    122550 6f28:B (2.4) BS03 ZN ? GO:0015276 ... P42264 29451794
    122551 6f2a:A (2.0) BS01 FE2 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122552 6f2a:B (2.0) BS01 FE2 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122553 6f2a:C (2.0) BS01 FE2 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122554 6f2a:D (2.0) BS01 FE2 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122555 6f2b:A (2.0) BS01 FE2 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122556 6f2b:B (2.0) BS01 FE2 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122557 6f2b:C (2.0) BS01 FE2 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122558 6f2b:D (2.0) BS01 FE2 1.14.11.- GO:0005506 ... C7QJ42 30410048
    122559 6f2g:B (2.92) BS01 ZN N/A N/A N/A 31000719
    122560 6f2n:A (1.149) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    122561 6f2n:A (1.149) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    122562 6f2p:A (2.6) BS01 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    122563 6f2p:A (2.6) BS02 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    122564 6f2p:A (2.6) BS03 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    122565 6f2p:A (2.6) BS04 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    122566 6f2p:A (2.6) BS05 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    122567 6f2p:A (2.6) BS06 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    122568 6f2p:A (2.6) BS07 CA 4.2.2.12 GO:0003824 ... A0A493R6T1 30503284
    122569 6f2t:A (2.4) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122570 6f2t:A (2.4) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122571 6f2t:A (2.4) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122572 6f2t:B (2.4) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122573 6f2t:B (2.4) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122574 6f2t:B (2.4) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122575 6f2v:A (2.5) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122576 6f2v:A (2.5) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122577 6f2v:A (2.5) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122578 6f2v:B (2.5) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122579 6f2v:B (2.5) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122580 6f2v:B (2.5) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122581 6f2w:B (3.4) BS01 ZN N/A N/A N/A 31000719
    122582 6f2y:A (2.4) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122583 6f2y:A (2.4) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122584 6f2y:A (2.4) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122585 6f2y:B (2.4) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122586 6f2y:B (2.4) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122587 6f2y:B (2.4) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122588 6f30:A (2.3) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122589 6f30:A (2.3) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122590 6f30:A (2.3) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122591 6f30:B (2.3) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122592 6f30:B (2.3) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122593 6f30:B (2.3) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122594 6f32:A (2.8) BS03 CA ? GO:0000166 ... Q83X90 30266997
    122595 6f32:B (2.8) BS02 CA ? GO:0000166 ... Q83X90 30266997
    122596 6f33:A (3.0) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122597 6f33:A (3.0) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122598 6f33:A (3.0) BS04 CA 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122599 6f33:B (3.0) BS02 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    122600 6f33:B (3.0) BS03 ZN 3.1.4.1
    3.6.1.9    		 GO:0003676 ... P97675 30022031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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