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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    122201 6eqw:A (1.994) BS04 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    122202 6eqx:A (1.994) BS02 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    122203 6eqx:A (1.994) BS03 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    122204 6eqx:A (1.994) BS04 CA 3.4.21.75 GO:0004252 ... P09958 29314830
    122205 6erc:A (2.50002) BS02 CA 1.11.1.7 GO:0004601 ... Q6TMK4 29242189
    122206 6erc:B (2.50002) BS01 CA 1.11.1.7 GO:0004601 ... Q6TMK4 29242189
    122207 6eri:Ab (3.0) BS02 ZN ? GO:0003735 ... P28805 29610536
    122208 6eri:Ae (3.0) BS02 ZN ? GO:0003735 ... P12230 29610536
    122209 6eri:BM (3.0) BS02 MG ? GO:0003676 ... P82163 29610536
    122210 6esb:1 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    122211 6esb:2 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    122212 6esb:3 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    122213 6esb:4 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    122214 6esb:5 (3.4) BS02 CA ? GO:0005198 ... P03088 29706532
    122215 6esb:6 (3.4) BS03 CA ? GO:0005198 ... P03088 29706532
    122216 6esl:A (1.87) BS01 ZN 3.4.11.10 GO:0004177 ... Q5ZRR6 29666285
    122217 6esl:A (1.87) BS02 ZN 3.4.11.10 GO:0004177 ... Q5ZRR6 29666285
    122218 6esl:B (1.87) BS01 ZN 3.4.11.10 GO:0004177 ... Q5ZRR6 29666285
    122219 6esl:B (1.87) BS02 ZN 3.4.11.10 GO:0004177 ... Q5ZRR6 29666285
    122220 6esm:A (1.104) BS01 ZN 3.4.24.35 GO:0004222 ... P14780 29727184
    122221 6esm:A (1.104) BS02 ZN 3.4.24.35 GO:0004222 ... P14780 29727184
    122222 6esm:A (1.104) BS03 CA 3.4.24.35 GO:0004222 ... P14780 29727184
    122223 6esm:A (1.104) BS04 CA 3.4.24.35 GO:0004222 ... P14780 29727184
    122224 6esm:A (1.104) BS05 CA 3.4.24.35 GO:0004222 ... P14780 29727184
    122225 6esq:H (2.95) BS01 ZN ? GO:0046872 ... A0A384E139 29531083
    122226 6est:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 2354062
    122227 6et5:L (2.87) BS05 FE ? GO:0009772 ... P06009 29618818
    122228 6et5:M (2.87) BS03 FE ? GO:0009772 ... P06010 29618818
    122229 6et9:E (2.75) BS01 ZN ? GO:0046872 ... A0A384E139 29531083
    122230 6et9:F (2.75) BS01 ZN ? GO:0046872 ... A0A384E139 29531083
    122231 6et9:G (2.75) BS01 ZN ? GO:0046872 ... A0A384E139 29531083
    122232 6et9:H (2.75) BS01 ZN ? GO:0046872 ... A0A384E139 29531083
    122233 6etb:A (1.905) BS02 FE ? GO:0005506 ... Q46877 N/A
    122234 6etb:A (1.905) BS03 FE ? GO:0005506 ... Q46877 N/A
    122235 6etb:B (1.905) BS02 FE ? GO:0005506 ... Q46877 N/A
    122236 6etb:B (1.905) BS03 FE ? GO:0005506 ... Q46877 N/A
    122237 6ete:A (1.468) BS01 ZN 1.14.11.66 N/A Q6B0I6 N/A
    122238 6etg:A (1.279) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    122239 6ets:A (1.333) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    122240 6ett:A (1.257) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    122241 6etu:A (1.33) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    122242 6etv:A (1.18) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    122243 6etw:A (1.35) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    122244 6ety:A (1.68) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    122245 6ety:A (1.68) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    122246 6ety:A (1.68) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    122247 6eu0:A (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    122248 6eu0:I (4.0) BS01 ZN ? GO:0000428 ... Q04307 29345637
    122249 6eu0:J (4.0) BS01 ZN ? GO:0000428 ... P22139 29345637
    122250 6eu0:L (4.0) BS01 ZN ? GO:0000428 ... P40422 29345637
    122251 6eu1:A (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    122252 6eu1:A (3.4) BS04 MG 2.7.7.6 GO:0000428 ... P04051 29345637
    122253 6eu1:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P22276 29345637
    122254 6eu1:I (3.4) BS01 ZN ? GO:0000428 ... Q04307 29345637
    122255 6eu1:J (3.4) BS01 ZN ? GO:0000428 ... P22139 29345637
    122256 6eu1:L (3.4) BS01 ZN ? GO:0000428 ... P40422 29345637
    122257 6eu2:A (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    122258 6eu2:A (3.4) BS02 MG 2.7.7.6 GO:0000428 ... P04051 29345637
    122259 6eu2:I (3.4) BS01 ZN ? GO:0000428 ... Q04307 29345637
    122260 6eu2:L (3.4) BS01 ZN ? GO:0000428 ... P40422 29345637
    122261 6eu3:A (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    122262 6eu3:A (3.3) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    122263 6eu3:A (3.3) BS03 MG 2.7.7.6 GO:0000428 ... P04051 29345637
    122264 6eu3:I (3.3) BS01 ZN ? GO:0000428 ... Q04307 29345637
    122265 6eu3:J (3.3) BS01 ZN ? GO:0000428 ... P22139 29345637
    122266 6eu3:L (3.3) BS01 ZN ? GO:0000428 ... P40422 29345637
    122267 6euh:A (2.0) BS02 CA ? GO:0004553 ... Q8A1H8 30349080
    122268 6euh:B (2.0) BS02 CA ? GO:0004553 ... Q8A1H8 30349080
    122269 6euh:C (2.0) BS01 CA ? GO:0004553 ... Q8A1H8 30349080
    122270 6eui:A (1.76) BS03 CA ? GO:0004553 ... Q8A1H8 30349080
    122271 6eum:A (1.18) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    122272 6eum:A (1.18) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    122273 6euo:A (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122274 6euo:B (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122275 6euo:C (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122276 6euo:D (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122277 6eur:A (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122278 6eur:B (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122279 6eur:C (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122280 6eur:D (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122281 6ev3:A (1.3) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122282 6ev4:A (1.14) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122283 6ev5:A (1.28) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122284 6ev6:A (1.1) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122285 6ev7:A (1.06) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122286 6ev8:A (1.03) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122287 6ev9:A (1.64) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122288 6eva:A (1.64) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122289 6evb:A (1.13) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122290 6evc:A (1.18) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122291 6evd:A (1.19) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    122292 6eve:A (2.05) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122293 6eve:B (2.05) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122294 6eve:C (2.05) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122295 6eve:D (2.05) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122296 6eve:D (2.05) BS03 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122297 6evf:A (2.06) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122298 6evf:B (2.06) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122299 6evf:C (2.06) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122300 6evf:D (2.06) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    122301 6evg:A (1.1) BS01 CU 1.16.3.4 GO:0005507 ... A6X5N0 29575798
    122302 6evr:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 29635168
    122303 6evr:B (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 29635168
    122304 6evw:J (4.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122305 6evw:K (4.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122306 6evx:A (4.2) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122307 6evx:C (4.2) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122308 6evx:E (4.2) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122309 6evx:J (4.2) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122310 6evx:K (4.2) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122311 6evx:L (4.2) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122312 6evy:A (4.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122313 6evy:J (4.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122314 6evy:L (4.4) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122315 6ew0:K (3.8) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 29967541
    122316 6ew3:A (2.14) BS01 ZN 3.5.2.6 GO:0016787 ... D1MEN9 29655609
    122317 6ew3:A (2.14) BS02 ZN 3.5.2.6 GO:0016787 ... D1MEN9 29655609
    122318 6ew3:B (2.14) BS01 ZN 3.5.2.6 GO:0016787 ... D1MEN9 29655609
    122319 6ew3:B (2.14) BS02 ZN 3.5.2.6 GO:0016787 ... D1MEN9 29655609
    122320 6ew9:A (2.2) BS02 CA 3.4.21.107 GO:0004252 ... P0AEE3 29658704
    122321 6ew9:B (2.2) BS02 CA 3.4.21.107 GO:0004252 ... P0AEE3 29658704
    122322 6ew9:C (2.2) BS02 CA 3.4.21.107 GO:0004252 ... P0AEE3 29658704
    122323 6ewe:A (1.46) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    122324 6ewe:A (1.46) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    122325 6ex1:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 29635168
    122326 6ex1:B (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 29635168
    122327 6ex3:A (2.2) BS01 FE 1.15.1.1 GO:0004784 ... P0A0J3 N/A
    122328 6ex3:B (2.2) BS01 FE 1.15.1.1 GO:0004784 ... P0A0J3 N/A
    122329 6ex3:C (2.2) BS01 FE 1.15.1.1 GO:0004784 ... P0A0J3 N/A
    122330 6ex3:D (2.2) BS01 FE 1.15.1.1 GO:0004784 ... P0A0J3 N/A
    122331 6ex4:A (2.4) BS01 FE 1.15.1.1 GO:0004784 ... Q2G261 N/A
    122332 6ex4:B (2.4) BS01 FE 1.15.1.1 GO:0004784 ... Q2G261 N/A
    122333 6ex5:A (1.75) BS01 MN 1.15.1.1 GO:0004784 ... Q2G261 N/A
    122334 6ex5:B (1.75) BS01 MN 1.15.1.1 GO:0004784 ... Q2G261 N/A
    122335 6ex6:A (2.16) BS01 ZN ? GO:0005975 ... Q8A1I7 N/A
    122336 6ex6:B (2.16) BS01 ZN ? GO:0005975 ... Q8A1I7 N/A
    122337 6exf:A (1.95) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122338 6exf:B (1.95) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122339 6exf:C (1.95) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122340 6exf:D (1.95) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122341 6exh:A (2.6) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122342 6exh:B (2.6) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122343 6exh:C (2.6) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122344 6exh:D (2.6) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    122345 6exn:L (3.7) BS03 ZN ? GO:0000282 ... P25337 29146871
    122346 6exn:L (3.7) BS04 ZN ? GO:0000282 ... P25337 29146871
    122347 6exn:L (3.7) BS05 ZN ? GO:0000282 ... P25337 29146871
    122348 6exn:M (3.7) BS03 ZN ? GO:0000387 ... Q12046 29146871
    122349 6exn:N (3.7) BS02 ZN ? GO:0000398 ... P38241 29146871
    122350 6exn:N (3.7) BS03 ZN ? GO:0000398 ... P38241 29146871
    122351 6exn:c (3.7) BS02 ZN ? GO:0000350 ... Q02775 29146871
    122352 6exv:A (3.6) BS05 ZN 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    122353 6exv:A (3.6) BS06 ZN 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    122354 6exv:A (3.6) BS07 MG 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    122355 6exv:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 29550768
    122356 6exv:C (3.6) BS01 ZN ? GO:0000428 ... I3LCH3 29550768
    122357 6exv:I (3.6) BS01 ZN ? GO:0000428 ... P60899 29550768
    122358 6exv:I (3.6) BS02 ZN ? GO:0000428 ... P60899 29550768
    122359 6exv:J (3.6) BS01 ZN N/A GO:0003677 ... N/A 29550768
    122360 6exv:L (3.6) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 29550768
    122361 6exw:A (2.2) BS01 ZN 2.3.2.27 N/A Q13490 30055105
    122362 6exw:C (2.2) BS02 ZN 2.3.2.27 N/A Q13490 30055105
    122363 6ey1:A (1.199) BS01 MN 1.14.11.29 GO:0005506 ... I6QVT6 30519597
    122364 6ey2:A (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    122365 6ey2:B (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    122366 6ey2:C (2.7) BS02 ZN 2.3.2.27 N/A P98170 30055105
    122367 6ey2:D (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    122368 6ey2:E (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    122369 6ey2:F (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    122370 6ey2:G (2.7) BS02 ZN 2.3.2.27 N/A P98170 30055105
    122371 6ey2:H (2.7) BS02 ZN 2.3.2.27 N/A P98170 30055105
    122372 6ey7:A (2.9) BS01 MN 3.1.-.- GO:0051276 ... P16732 31458978
    122373 6ey7:A (2.9) BS02 MN 3.1.-.- GO:0051276 ... P16732 31458978
    122374 6ey7:B (2.9) BS01 MN 3.1.-.- GO:0051276 ... P16732 31458978
    122375 6ey7:B (2.9) BS02 MN 3.1.-.- GO:0051276 ... P16732 31458978
    122376 6ey7:C (2.9) BS01 MN 3.1.-.- GO:0051276 ... P16732 31458978
    122377 6ey7:C (2.9) BS02 MN 3.1.-.- GO:0051276 ... P16732 31458978
    122378 6ey7:D (2.9) BS01 MN 3.1.-.- GO:0051276 ... P16732 31458978
    122379 6ey7:D (2.9) BS02 MN 3.1.-.- GO:0051276 ... P16732 31458978
    122380 6eyc:5 (3.8) BS02 ZN 3.6.4.12 GO:0000727 ... P29496 29872003
    122381 6eyc:7 (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 29872003
    122382 6eyd:D (4.22) BS01 ZN 2.7.7.6 GO:0000287 ... A0QS66 30478083
    122383 6eyd:D (4.22) BS02 ZN 2.7.7.6 GO:0000287 ... A0QS66 30478083
    122384 6eyd:D (4.22) BS03 MG 2.7.7.6 GO:0000287 ... A0QS66 30478083
    122385 6eyi:A (2.04) BS02 CA ? GO:0007155 ... P16581 N/A
    122386 6eyj:A (2.2) BS02 CA ? GO:0007155 ... P16581 N/A
    122387 6eyj:B (2.2) BS02 CA ? GO:0007155 ... P16581 N/A
    122388 6eyk:A (2.21) BS02 CA ? GO:0007155 ... P16581 N/A
    122389 6eyt:A (2.21) BS01 MN ? GO:0000166 ... A0A0H3NMP8 29449376
    122390 6eyt:B (2.21) BS01 MN ? GO:0000166 ... A0A0H3NMP8 29449376
    122391 6eyv:A (2.704) BS01 ZN ? GO:0046872 ... A0A0H2ZBG1 30030378
    122392 6eyv:A (2.704) BS02 ZN ? GO:0046872 ... A0A0H2ZBG1 30030378
    122393 6eyv:B (2.704) BS01 ZN ? GO:0046872 ... A0A0H2ZBG1 30030378
    122394 6eyv:B (2.704) BS02 ZN ? GO:0046872 ... A0A0H2ZBG1 30030378
    122395 6ez9:A (1.61) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    122396 6ez9:A (1.61) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    122397 6ez9:A (1.61) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    122398 6ezf:A (1.5) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29559702
    122399 6ezj:A (3.1) BS01 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    122400 6ezj:A (3.1) BS03 MN 4.2.1.19 GO:0000105 ... O23346 29434040
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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