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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    12001 1q0k:A (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12002 1q0k:B (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12003 1q0k:C (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12004 1q0k:D (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12005 1q0k:E (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12006 1q0k:F (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12007 1q0k:G (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12008 1q0k:H (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12009 1q0k:I (2.1) BS02 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12010 1q0k:J (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12011 1q0k:K (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12012 1q0k:L (2.1) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12013 1q0m:A (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12014 1q0m:B (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12015 1q0m:C (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12016 1q0m:D (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12017 1q0m:E (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12018 1q0m:F (1.68) BS01 NI 1.15.1.1 GO:0004784 ... P80734 15173586
    12019 1q0n:A (1.25) BS01 MG 2.7.6.3 GO:0000287 ... P26281 11080626
    12020 1q0n:A (1.25) BS02 MG 2.7.6.3 GO:0000287 ... P26281 11080626
    12021 1q0o:A (2.3) BS01 FE 1.13.11.15 GO:0046872 ... Q45135 15028678
    12022 1q0o:B (2.3) BS01 FE 1.13.11.15 GO:0046872 ... Q45135 15028678
    12023 1q0p:A (1.8) BS01 MN 3.4.21.47 GO:0004252 ... P00751 15016353
    12024 1q14:A (2.5) BS01 ZN 2.3.1.286 GO:0000183 ... P53686 14502267
    12025 1q16:A (1.9) BS03 6MO 1.7.5.1 GO:0005515 ... P09152 12910261
    12026 1q17:A (2.7) BS01 ZN 2.3.1.286 GO:0017136 ... P53686 14604530
    12027 1q17:B (2.7) BS01 ZN 2.3.1.286 GO:0017136 ... P53686 14604530
    12028 1q17:C (2.7) BS01 ZN 2.3.1.286 GO:0017136 ... P53686 14604530
    12029 1q1a:A (1.5) BS02 ZN 2.3.1.286 GO:0017136 ... P53686 14604530
    12030 1q1n:A (3.15) BS01 ZN 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    12031 1q1p:A (3.2) BS01 CA ? GO:0005509 ... P09803 15071499
    12032 1q1p:A (3.2) BS02 CA ? GO:0005509 ... P09803 15071499
    12033 1q1p:A (3.2) BS03 CA ? GO:0005509 ... P09803 15071499
    12034 1q1y:A (1.9) BS01 ZN 3.5.1.88 GO:0006412 ... P68826 15382235
    12035 1q2b:A (1.6) BS01 CO 3.2.1.91 GO:0004553 ... P62694 14568538
    12036 1q2b:A (1.6) BS02 CO 3.2.1.91 GO:0004553 ... P62694 14568538
    12037 1q2e:B (1.75) BS03 CA 3.2.1.91 GO:0004553 ... P62694 14568538
    12038 1q2l:A (2.2) BS01 ZN 3.4.24.55 GO:0004222 ... P05458 N/A
    12039 1q2o:A (1.74) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 14718923
    12040 1q2o:B (1.74) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 14718923
    12041 1q2r:A (2.9) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 12949492
    12042 1q2r:B (2.9) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 12949492
    12043 1q2r:C (2.9) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 12949492
    12044 1q2r:D (2.9) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 12949492
    12045 1q2s:A (3.2) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 12949492
    12046 1q2s:B (3.2) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 12949492
    12047 1q2s:C (3.2) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 12949492
    12048 1q2s:D (3.2) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 12949492
    12049 1q39:A (2.8) BS01 ZN 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 16145054
    12050 1q39:A (2.8) BS02 CA 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 16145054
    12051 1q39:A (2.8) BS03 CA 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 16145054
    12052 1q3a:A (2.1) BS01 ZN 3.4.24.22 GO:0004222 ... P09238 15095982
    12053 1q3a:A (2.1) BS02 ZN 3.4.24.22 GO:0004222 ... P09238 15095982
    12054 1q3a:A (2.1) BS03 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12055 1q3a:A (2.1) BS04 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12056 1q3a:A (2.1) BS05 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12057 1q3a:B (2.1) BS01 ZN 3.4.24.22 GO:0004222 ... P09238 15095982
    12058 1q3a:B (2.1) BS02 ZN 3.4.24.22 GO:0004222 ... P09238 15095982
    12059 1q3a:B (2.1) BS03 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12060 1q3a:B (2.1) BS04 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12061 1q3a:B (2.1) BS05 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12062 1q3a:C (2.1) BS01 ZN 3.4.24.22 GO:0004222 ... P09238 15095982
    12063 1q3a:C (2.1) BS02 ZN 3.4.24.22 GO:0004222 ... P09238 15095982
    12064 1q3a:C (2.1) BS03 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12065 1q3a:C (2.1) BS04 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12066 1q3a:C (2.1) BS05 CA 3.4.24.22 GO:0004222 ... P09238 15095982
    12067 1q3b:A (2.05) BS01 ZN 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 16145054
    12068 1q3b:A (2.05) BS02 MG 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 16145054
    12069 1q3c:A (2.3) BS01 ZN 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 16145054
    12070 1q3c:A (2.3) BS02 MG 3.2.2.-
    4.2.99.18
    GO:0000703 ... P50465 16145054
    12071 1q3h:A (2.5) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    12072 1q3h:B (2.5) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    12073 1q3h:C (2.5) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    12074 1q3h:D (2.5) BS01 MG 5.6.1.6 GO:0005524 ... P26361 14685259
    12075 1q3i:A (2.6) BS01 NI 7.2.2.13 GO:0000166 ... D2WKD8 14499619
    12076 1q3i:A (2.6) BS02 NI 7.2.2.13 GO:0000166 ... D2WKD8 14499619
    12077 1q3i:A (2.6) BS03 NI 7.2.2.13 GO:0000166 ... D2WKD8 14499619
    12078 1q3k:A (2.1) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12079 1q3k:A (2.1) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12080 1q3k:B (2.1) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12081 1q3k:B (2.1) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12082 1q3k:C (2.1) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12083 1q3k:C (2.1) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12084 1q3k:D (2.1) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12085 1q3k:D (2.1) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12086 1q3k:E (2.1) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12087 1q3k:E (2.1) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12088 1q3k:F (2.1) BS01 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12089 1q3k:F (2.1) BS02 ZN 3.5.2.10 GO:0006601 ... P83772 12946365
    12090 1q3q:C (2.3) BS01 MG 3.6.4.9 GO:0005524 ... P61112 14729342
    12091 1q3q:D (2.3) BS01 MG 3.6.4.9 GO:0005524 ... P61112 14729342
    12092 1q3v:A (2.91) BS03 MG ? GO:0003677 ... P06956 12954782
    12093 1q3y:A (-1.00) BS01 ZN N/A GO:0003676 ... N/A 15163759
    12094 1q3y:A (-1.00) BS02 ZN N/A GO:0003676 ... N/A 15163759
    12095 1q3z:A (-1.00) BS01 ZN N/A GO:0003676 ... N/A 15163759
    12096 1q3z:A (-1.00) BS02 ZN N/A GO:0003676 ... N/A 15163759
    12097 1q4n:X (2.07) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 14678792
    12098 1q4q:A (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    12099 1q4q:B (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    12100 1q4q:C (2.1) BS02 ZN 2.3.2.27 N/A Q24306 14517550
    12101 1q4q:D (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    12102 1q4q:E (2.1) BS02 ZN 2.3.2.27 N/A Q24306 14517550
    12103 1q4q:F (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    12104 1q4q:G (2.1) BS02 ZN 2.3.2.27 N/A Q24306 14517550
    12105 1q4q:H (2.1) BS02 ZN 2.3.2.27 N/A Q24306 14517550
    12106 1q4q:I (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    12107 1q4q:J (2.1) BS03 ZN 2.3.2.27 N/A Q24306 14517550
    12108 1q4r:A (1.9) BS01 MG ? GO:0005829 ... Q9LUV2 15326607
    12109 1q4w:A (1.93) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    12110 1q54:A (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    12111 1q54:A (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    12112 1q54:B (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    12113 1q54:B (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    12114 1q55:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    12115 1q55:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    12116 1q55:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    12117 1q55:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    12118 1q55:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    12119 1q55:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    12120 1q55:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    12121 1q55:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    12122 1q55:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    12123 1q55:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    12124 1q55:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    12125 1q55:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    12126 1q55:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    12127 1q55:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    12128 1q55:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    12129 1q55:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    12130 1q55:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    12131 1q55:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    12132 1q55:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    12133 1q55:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    12134 1q55:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    12135 1q55:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    12136 1q55:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    12137 1q55:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    12138 1q55:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    12139 1q55:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    12140 1q55:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    12141 1q55:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    12142 1q55:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    12143 1q55:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    12144 1q55:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    12145 1q55:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    12146 1q55:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    12147 1q55:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    12148 1q55:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    12149 1q55:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    12150 1q55:D (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    12151 1q55:D (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    12152 1q55:D (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    12153 1q55:D (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    12154 1q55:D (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    12155 1q55:D (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    12156 1q55:D (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    12157 1q55:D (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    12158 1q55:D (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    12159 1q55:D (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    12160 1q55:D (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    12161 1q55:D (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    12162 1q5a:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    12163 1q5a:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    12164 1q5a:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    12165 1q5a:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    12166 1q5a:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    12167 1q5a:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    12168 1q5a:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    12169 1q5a:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    12170 1q5a:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    12171 1q5a:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    12172 1q5a:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    12173 1q5a:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    12174 1q5a:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    12175 1q5a:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    12176 1q5a:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    12177 1q5a:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    12178 1q5a:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    12179 1q5a:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    12180 1q5a:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    12181 1q5a:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    12182 1q5a:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    12183 1q5a:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    12184 1q5a:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    12185 1q5a:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    12186 1q5b:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    12187 1q5b:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    12188 1q5b:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    12189 1q5b:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    12190 1q5b:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    12191 1q5b:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    12192 1q5b:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    12193 1q5b:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    12194 1q5b:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    12195 1q5b:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    12196 1q5b:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    12197 1q5b:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    12198 1q5b:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    12199 1q5b:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    12200 1q5b:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218