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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    121601 6ebp:A (1.59) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121602 6ebp:B (1.59) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121603 6ebp:C (1.59) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121604 6ebp:D (1.59) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121605 6ebr:A (1.816) BS02 MN ? GO:0000160 ... A0A0H2UQ68 N/A
    121606 6ebz:A (1.66) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121607 6ebz:B (1.66) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121608 6ebz:C (1.66) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121609 6ebz:D (1.66) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121610 6ec0:B (2.983) BS01 CO ? GO:0005198 ... P13645 31036554
    121611 6ech:A (2.19) BS02 MG 2.7.1.40 GO:0000287 ... P12928 31825824
    121612 6ech:A (2.19) BS03 MG 2.7.1.40 GO:0000287 ... P12928 31825824
    121613 6ech:B (2.19) BS02 MG 2.7.1.40 GO:0000287 ... P12928 31825824
    121614 6ech:B (2.19) BS03 MG 2.7.1.40 GO:0000287 ... P12928 31825824
    121615 6ech:C (2.19) BS02 MG 2.7.1.40 GO:0000287 ... P12928 31825824
    121616 6ech:C (2.19) BS03 MG 2.7.1.40 GO:0000287 ... P12928 31825824
    121617 6ech:D (2.19) BS02 MG 2.7.1.40 GO:0000287 ... P12928 31825824
    121618 6ech:D (2.19) BS03 MG 2.7.1.40 GO:0000287 ... P12928 31825824
    121619 6ecl:A (2.385) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 N/A
    121620 6ecl:A (2.385) BS03 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 N/A
    121621 6ecz:A (2.21) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30433782
    121622 6ed2:A (2.3) BS01 MG 3.2.1.31 GO:0004553 ... C7H4D2 30696850
    121623 6ed2:A (2.3) BS02 MG 3.2.1.31 GO:0004553 ... C7H4D2 30696850
    121624 6eda:A (1.879) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30433782
    121625 6edb:A (3.209) BS03 ZN 2.7.7.86 N/A Q05066
    Q8N884    		 31142647
    121626 6edc:A (2.712) BS03 ZN 2.7.7.86 N/A Q8N884 31142647
    121627 6edt:D (-1.00) BS03 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121628 6edt:D (-1.00) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121629 6edt:D (-1.00) BS05 MG 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121630 6edw:A (1.8) BS01 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121631 6edw:A (1.8) BS02 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121632 6edw:B (1.8) BS01 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121633 6edw:C (1.8) BS01 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121634 6edw:C (1.8) BS02 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121635 6edw:D (1.8) BS01 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121636 6edw:D (1.8) BS02 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121637 6ee1:A (2.36) BS02 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121638 6ee1:B (2.36) BS02 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121639 6ee1:C (2.36) BS02 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121640 6ee1:D (2.36) BS02 MG 4.1.3.1 GO:0003824 ... Q8VJU4 31604954
    121641 6ee2:A (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121642 6ee2:B (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121643 6ee2:C (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121644 6ee2:D (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121645 6ee2:E (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121646 6ee2:F (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121647 6ee2:G (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121648 6ee2:H (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121649 6ee2:I (2.1) BS01 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121650 6ee2:J (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121651 6ee2:K (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121652 6ee2:L (2.1) BS02 ZN 3.4.11.1 GO:0005737 ... W4I9J7 30537832
    121653 6ee3:A (1.82) BS01 ZN 3.4.11.- GO:0006508 ... O96935 30537832
    121654 6ee4:A (1.58) BS01 ZN 3.4.11.- GO:0006508 ... O96935 30537832
    121655 6ee6:A (1.5) BS01 ZN 3.4.11.- GO:0006508 ... O96935 30537832
    121656 6ee8:D (3.92) BS03 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121657 6ee8:D (3.92) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121658 6ee8:D (3.92) BS05 MG 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121659 6eea:A (1.63) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30433782
    121660 6eeb:A (1.96) BS02 CA ? GO:0000086 ... P0DP23 31337679
    121661 6eeb:A (1.96) BS03 CA ? GO:0000086 ... P0DP23 31337679
    121662 6eeb:A (1.96) BS04 CA ? GO:0000086 ... P0DP23 31337679
    121663 6eeb:A (1.96) BS05 CA ? GO:0000086 ... P0DP23 31337679
    121664 6eeb:A (1.96) BS06 ZN ? GO:0000086 ... P0DP23 31337679
    121665 6eec:D (3.55) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121666 6eec:D (3.55) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121667 6eec:D (3.55) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 30626968
    121668 6eed:A (1.5) BS01 ZN 3.4.11.- GO:0006508 ... O96935 30537832
    121669 6eee:A (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121670 6eee:B (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121671 6eee:C (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121672 6eee:D (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121673 6eee:E (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121674 6eee:F (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121675 6eee:G (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121676 6eee:H (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121677 6eee:I (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121678 6eee:J (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121679 6eee:K (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121680 6eee:L (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    121681 6eeg:A (1.95) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    121682 6eeh:A (1.629) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30433782
    121683 6eeo:A (1.719) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30433782
    121684 6eer:A (1.82) BS01 MG ? GO:0046872 ... A0A161XU12 30605596
    121685 6eer:B (1.82) BS01 MG ? GO:0046872 ... A0A161XU12 30605596
    121686 6eer:C (1.82) BS01 MG ? GO:0046872 ... A0A161XU12 30605596
    121687 6eer:D (1.82) BS01 MG ? GO:0046872 ... A0A161XU12 30605596
    121688 6eet:A (3.23) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    121689 6eet:A (3.23) BS05 CA ? GO:0005509 ... Q99PJ1 32963095
    121690 6eet:A (3.23) BS06 CA ? GO:0005509 ... Q99PJ1 32963095
    121691 6eet:A (3.23) BS07 CA ? GO:0005509 ... Q99PJ1 32963095
    121692 6ef7:A (1.03) BS01 CA ? N/A Q939N5 35585145
    121693 6efa:A (1.6) BS01 CA ? N/A Q939N5 35585145
    121694 6efb:A (1.9) BS01 CA N/A N/A N/A 35585145
    121695 6efc:A (1.4) BS01 CA ? N/A A8AWU7 35585145
    121696 6eff:A (1.6) BS01 CA N/A N/A N/A 35585145
    121697 6eff:A (1.6) BS02 CA N/A N/A N/A 35585145
    121698 6eff:B (1.6) BS01 CA N/A N/A N/A 35585145
    121699 6eff:B (1.6) BS02 CA N/A N/A N/A 35585145
    121700 6eff:C (1.6) BS01 CA N/A N/A N/A 35585145
    121701 6eff:C (1.6) BS02 CA N/A N/A N/A 35585145
    121702 6eff:D (1.6) BS01 CA N/A N/A N/A 35585145
    121703 6eff:D (1.6) BS02 CA N/A N/A N/A 35585145
    121704 6efg:A (2.04) BS02 MG 4.1.1.1 GO:0000287 ... Q12629 N/A
    121705 6efg:B (2.04) BS03 MG 4.1.1.1 GO:0000287 ... Q12629 N/A
    121706 6efg:D (2.04) BS02 MG 4.1.1.1 GO:0000287 ... Q12629 N/A
    121707 6efg:E (2.04) BS03 MG 4.1.1.1 GO:0000287 ... Q12629 N/A
    121708 6efh:A (2.99) BS03 MG 4.1.1.1 GO:0000287 ... Q12629 N/A
    121709 6efh:B (2.99) BS04 MG 4.1.1.1 GO:0000287 ... Q12629 N/A
    121710 6efi:A (1.715) BS01 CA ? N/A F0FS71 35585145
    121711 6efi:B (1.715) BS01 CA ? N/A F0FS71 35585145
    121712 6efj:A (1.65) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30942078
    121713 6efj:A (1.65) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30942078
    121714 6eg5:A (2.45) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    121715 6eg5:C (2.45) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    121716 6eg8:I (2.8) BS02 MG ? GO:0002862 ... P63092 31080070
    121717 6eg8:J (2.8) BS02 MG ? GO:0002862 ... P63092 31080070
    121718 6eg8:K (2.8) BS02 MG ? GO:0002862 ... P63092 31080070
    121719 6eg8:L (2.8) BS02 MG ? GO:0002862 ... P63092 31080070
    121720 6eg9:B (2.414) BS02 CO 2.7.11.1 GO:0000287 ... Q9NWZ3 30679311
    121721 6ega:B (2.512) BS02 CO 2.7.11.1 GO:0000287 ... Q9NWZ3 30679311
    121722 6egf:B (2.61) BS02 MG 2.7.11.1 GO:0000287 ... Q9NWZ3 30679311
    121723 6egl:A (1.4) BS01 ZN N/A N/A N/A 30861211
    121724 6egm:A (1.84) BS01 ZN N/A N/A N/A 30861211
    121725 6egn:B (1.84) BS01 ZN N/A N/A N/A 30861211
    121726 6egn:C (1.84) BS01 ZN N/A N/A N/A 30861211
    121727 6egn:C (1.84) BS02 ZN N/A N/A N/A 30861211
    121728 6ego:A (1.93) BS01 ZN N/A N/A N/A 30861211
    121729 6egp:A (1.77) BS01 ZN N/A N/A N/A N/A
    121730 6egs:A (2.7) BS01 MN 2.4.1.41 N/A Q10471 29601100
    121731 6egs:B (2.7) BS01 MN 2.4.1.41 N/A Q10471 29601100
    121732 6ehf:A (2.72) BS01 CA ? GO:0006811 ... A0A0H3AME7 29657131
    121733 6ehh:B (2.4) BS02 CU 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P53368 29281266
    121734 6ehh:C (2.4) BS02 CU 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P53368 29281266
    121735 6ehh:C (2.4) BS03 MG 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P53368 29281266
    121736 6ehh:D (2.4) BS02 CU 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P53368 29281266
    121737 6ehq:L (2.2) BS04 MG 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    121738 6ehq:M (2.2) BS03 MG 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    121739 6ehs:L (1.5) BS04 MG 1.12.99.6 GO:0005886 ... P0ACE1 29555844
    121740 6ehs:M (1.5) BS04 MG 1.12.99.6 GO:0005886 ... P0ACE1 29555844
    121741 6ei2:B (1.61) BS01 CO ? GO:0000139 ... P61769 N/A
    121742 6ei4:A (2.0) BS02 CU ? GO:0016491 ... B2ZB02 29634898
    121743 6ei4:A (2.0) BS03 CU ? GO:0016491 ... B2ZB02 29634898
    121744 6ei4:B (2.0) BS02 CU ? GO:0016491 ... B2ZB02 29634898
    121745 6ei4:B (2.0) BS03 CU ? GO:0016491 ... B2ZB02 29634898
    121746 6ein:A (2.11) BS02 ZN 1.14.11.67 N/A Q9UGL1 N/A
    121747 6ein:A (2.11) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    121748 6eiu:A (1.88) BS01 ZN 1.14.11.67 N/A Q9UGL1 N/A
    121749 6eiu:A (1.88) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    121750 6eiu:A (1.88) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    121751 6eiu:A (1.88) BS05 ZN 1.14.11.67 N/A Q9UGL1 N/A
    121752 6eiy:A (2.15) BS01 ZN 1.14.11.67 N/A Q9UGL1 N/A
    121753 6eiy:A (2.15) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    121754 6eiy:A (2.15) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    121755 6ej0:A (2.06) BS01 ZN 1.14.11.67 N/A Q9UGL1 N/A
    121756 6ej0:A (2.06) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    121757 6ej0:A (2.06) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    121758 6ej1:A (2.07) BS01 ZN 1.14.11.67 N/A Q9UGL1 N/A
    121759 6ej1:A (2.07) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    121760 6ej1:A (2.07) BS03 MN 1.14.11.67 N/A Q9UGL1 N/A
    121761 6ek6:A (2.05) BS01 ZN 1.14.11.67 N/A Q9UGL1 N/A
    121762 6ek6:A (2.05) BS02 MN 1.14.11.67 N/A Q9UGL1 N/A
    121763 6ek9:A (1.5) BS01 CU1 ? N/A D6ES11 29292456
    121764 6ek9:A (1.5) BS02 CU1 ? N/A D6ES11 29292456
    121765 6ek9:A (1.5) BS03 CU1 ? N/A D6ES11 29292456
    121766 6ek9:A (1.5) BS04 CU1 ? N/A D6ES11 29292456
    121767 6ek9:A (1.5) BS05 CU1 ? N/A D6ES11 29292456
    121768 6ek9:A (1.5) BS06 CU1 ? N/A D6ES11 29292456
    121769 6ek9:A (1.5) BS07 CU1 ? N/A D6ES11 29292456
    121770 6ek9:A (1.5) BS08 CU1 ? N/A D6ES11 29292456
    121771 6ek9:A (1.5) BS09 CU1 ? N/A D6ES11 29292456
    121772 6ek9:A (1.5) BS10 CU1 ? N/A D6ES11 29292456
    121773 6ek9:A (1.5) BS11 CU1 ? N/A D6ES11 29292456
    121774 6ek9:A (1.5) BS12 CU1 ? N/A D6ES11 29292456
    121775 6ek9:A (1.5) BS13 CU1 ? N/A D6ES11 29292456
    121776 6ek9:A (1.5) BS14 CU1 ? N/A D6ES11 29292456
    121777 6ek9:A (1.5) BS15 CU1 ? N/A D6ES11 29292456
    121778 6ek9:A (1.5) BS16 CU1 ? N/A D6ES11 29292456
    121779 6ek9:A (1.5) BS17 CU1 ? N/A D6ES11 29292456
    121780 6ek9:A (1.5) BS18 CU1 ? N/A D6ES11 29292456
    121781 6ek9:A (1.5) BS19 CU1 ? N/A D6ES11 29292456
    121782 6ek9:A (1.5) BS20 CU1 ? N/A D6ES11 29292456
    121783 6ekb:A (1.9) BS01 ZN ? N/A Q9SN73 29217567
    121784 6ekb:A (1.9) BS02 ZN ? N/A Q9SN73 29217567
    121785 6ekb:A (1.9) BS03 ZN ? N/A Q9SN73 29217567
    121786 6ekc:B1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    121787 6ekc:B1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    121788 6ekc:B2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    121789 6ekc:B2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    121790 6ekc:B3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    121791 6ekc:B3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    121792 6ekc:B4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    121793 6ekc:B4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    121794 6ekc:B5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    121795 6ekc:B5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    121796 6ekc:B6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    121797 6ekc:B6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    121798 6ekc:B7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    121799 6ekc:B7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    121800 6ekc:B8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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