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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    121401 6e1k:A (3.3) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    121402 6e1k:A (3.3) BS02 CA ? GO:0000325 ... Q94KI8 30190435
    121403 6e1k:B (3.3) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    121404 6e1m:A (3.3) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    121405 6e1m:B (3.3) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    121406 6e1n:A (3.7) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    121407 6e1n:A (3.7) BS02 CA ? GO:0000325 ... Q94KI8 30190435
    121408 6e1n:B (3.7) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    121409 6e1o:A (3.59) BS01 CA ? GO:0005245 ... Q4WA18 30648972
    121410 6e1o:A (3.59) BS02 CA ? GO:0005245 ... Q4WA18 30648972
    121411 6e1o:B (3.59) BS01 CA ? GO:0005245 ... Q4WA18 30648972
    121412 6e1o:B (3.59) BS02 CA ? GO:0005245 ... Q4WA18 30648972
    121413 6e1p:A (3.7) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    121414 6e1p:A (3.7) BS02 CA ? GO:0000325 ... Q94KI8 30190435
    121415 6e1p:B (3.7) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    121416 6e1p:B (3.7) BS02 CA ? GO:0000325 ... Q94KI8 30190435
    121417 6e25:A (-1.00) BS01 ZN ? GO:0042981 ... Q9H257 30206119
    121418 6e2f:E (3.9) BS01 CA ? GO:0000086 ... P0DP23 30116787
    121419 6e2f:E (3.9) BS02 CA ? GO:0000086 ... P0DP23 30116787
    121420 6e2f:E (3.9) BS03 CA ? GO:0000086 ... P0DP23 30116787
    121421 6e2f:E (3.9) BS04 CA ? GO:0000086 ... P0DP23 30116787
    121422 6e2g:E (3.6) BS01 CA ? GO:0000086 ... P0DP23 30116787
    121423 6e2g:E (3.6) BS02 CA ? GO:0000086 ... P0DP23 30116787
    121424 6e2g:E (3.6) BS03 CA ? GO:0000086 ... P0DP23 30116787
    121425 6e2g:E (3.6) BS04 CA ? GO:0000086 ... P0DP23 30116787
    121426 6e33:A (1.705) BS03 ZN ? GO:0000981 ... O13658 30212894
    121427 6e33:A (1.705) BS04 ZN ? GO:0000981 ... O13658 30212894
    121428 6e36:A (1.7) BS01 MG ? N/A Q9KW51 34339301
    121429 6e36:B (1.7) BS01 MG ? N/A Q9KW51 34339301
    121430 6e3f:A (2.7) BS01 CA ? N/A Q9KW51 34339301
    121431 6e3f:A (2.7) BS02 CA ? N/A Q9KW51 34339301
    121432 6e3m:A (2.65) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121433 6e3m:A (2.65) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121434 6e3n:A (3.19) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121435 6e3n:A (3.19) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121436 6e3o:A (3.19) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121437 6e3o:A (3.19) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121438 6e3p:A (2.8) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121439 6e3p:A (2.8) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121440 6e3v:A (1.96) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 30817143
    121441 6e3v:A (1.96) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 30817143
    121442 6e3w:A (2.02) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 30817143
    121443 6e3w:A (2.02) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 30817143
    121444 6e3x:A (2.65) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    121445 6e3x:A (2.65) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    121446 6e47:A (1.95) BS01 MG ? N/A Q80J94 30194229
    121447 6e47:A (1.95) BS02 MG ? N/A Q80J94 30194229
    121448 6e47:A (1.95) BS05 MG ? N/A Q80J94 30194229
    121449 6e47:B (1.95) BS03 MG ? N/A Q80J94 30194229
    121450 6e47:B (1.95) BS04 MG ? N/A Q80J94 30194229
    121451 6e47:B (1.95) BS05 MG ? N/A Q80J94 30194229
    121452 6e47:F (1.95) BS01 MG ? N/A Q6SJQ7 30194229
    121453 6e47:G (1.95) BS01 MG ? N/A Q6SJQ7 30194229
    121454 6e48:A (1.801) BS02 CA ? N/A Q80J94 30194229
    121455 6e48:A (1.801) BS03 CA ? N/A Q80J94 30194229
    121456 6e48:A (1.801) BS04 CA ? N/A Q80J94 30194229
    121457 6e48:B (1.801) BS03 CA ? N/A Q80J94 30194229
    121458 6e48:B (1.801) BS04 CA ? N/A Q80J94 30194229
    121459 6e48:B (1.801) BS05 CA ? N/A Q80J94 30194229
    121460 6e48:F (1.801) BS01 CA ? N/A Q6SJQ7 30194229
    121461 6e48:G (1.801) BS01 CA ? N/A Q6SJQ7 30194229
    121462 6e4c:A (2.35) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121463 6e4c:A (2.35) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121464 6e4q:A (2.799) BS01 MN 2.4.1.41 N/A Q8MRC9 30158631
    121465 6e4q:B (2.799) BS01 MN 2.4.1.41 N/A Q8MRC9 30158631
    121466 6e4q:C (2.799) BS01 MN 2.4.1.41 N/A Q8MRC9 30158631
    121467 6e4q:D (2.799) BS01 MN 2.4.1.41 N/A Q8MRC9 30158631
    121468 6e4y:L (2.24) BS02 ZN ? N/A A0A097PUG4 30653992
    121469 6e4z:L (2.202) BS02 ZN ? N/A A0A097PUG4 30653992
    121470 6e4z:L (2.202) BS03 ZN ? N/A A0A097PUG4 30653992
    121471 6e53:A (2.8) BS02 MG 2.7.7.49 GO:0000781 ... Q0QHL8 30951520
    121472 6e53:A (2.8) BS03 MG 2.7.7.49 GO:0000781 ... Q0QHL8 30951520
    121473 6e54:A (1.65) BS03 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    121474 6e58:A (2.75) BS01 CA 3.2.1.96 GO:0004553 ... T1WGN1 30937380
    121475 6e58:B (2.75) BS01 CA 3.2.1.96 GO:0004553 ... T1WGN1 30937380
    121476 6e5m:A (1.612) BS02 CA 3.4.21.4 GO:0004175 ... P00760 30817908
    121477 6e5x:A (1.5) BS02 CA ? GO:0003723 ... Q77DJ5 30550789
    121478 6e60:A (1.5) BS01 MG N/A N/A N/A 31062073
    121479 6e61:A (2.51) BS04 MG N/A N/A N/A 31062073
    121480 6e61:B (2.51) BS04 MG N/A N/A N/A 31062073
    121481 6e6b:A (4.52) BS01 CA ? GO:0005509 ... Q91XX6 30971825
    121482 6e6b:A (4.52) BS02 CA ? GO:0005509 ... Q91XX6 30971825
    121483 6e6b:A (4.52) BS03 CA ? GO:0005509 ... Q91XX6 30971825
    121484 6e6b:A (4.52) BS04 CA ? GO:0005509 ... Q91XX6 30971825
    121485 6e6b:A (4.52) BS05 CA ? GO:0005509 ... Q91XX6 30971825
    121486 6e6b:A (4.52) BS06 CA ? GO:0005509 ... Q91XX6 30971825
    121487 6e6b:A (4.52) BS07 CA ? GO:0005509 ... Q91XX6 30971825
    121488 6e6b:A (4.52) BS08 CA ? GO:0005509 ... Q91XX6 30971825
    121489 6e6b:A (4.52) BS09 CA ? GO:0005509 ... Q91XX6 30971825
    121490 6e6b:A (4.52) BS10 CA ? GO:0005509 ... Q91XX6 30971825
    121491 6e6b:A (4.52) BS11 CA ? GO:0005509 ... Q91XX6 30971825
    121492 6e6b:A (4.52) BS12 CA ? GO:0005509 ... Q91XX6 30971825
    121493 6e6b:A (4.52) BS13 CA ? GO:0005509 ... Q91XX6 30971825
    121494 6e6b:A (4.52) BS14 CA ? GO:0005509 ... Q91XX6 30971825
    121495 6e6b:A (4.52) BS15 CA ? GO:0005509 ... Q91XX6 30971825
    121496 6e6b:B (4.52) BS01 CA ? GO:0005509 ... Q91XX6 30971825
    121497 6e6b:B (4.52) BS02 CA ? GO:0005509 ... Q91XX6 30971825
    121498 6e6b:B (4.52) BS03 CA ? GO:0005509 ... Q91XX6 30971825
    121499 6e6b:B (4.52) BS04 CA ? GO:0005509 ... Q91XX6 30971825
    121500 6e6b:B (4.52) BS05 CA ? GO:0005509 ... Q91XX6 30971825
    121501 6e6b:B (4.52) BS06 CA ? GO:0005509 ... Q91XX6 30971825
    121502 6e6b:B (4.52) BS07 CA ? GO:0005509 ... Q91XX6 30971825
    121503 6e6b:B (4.52) BS08 CA ? GO:0005509 ... Q91XX6 30971825
    121504 6e6b:B (4.52) BS09 CA ? GO:0005509 ... Q91XX6 30971825
    121505 6e6b:B (4.52) BS10 CA ? GO:0005509 ... Q91XX6 30971825
    121506 6e6b:B (4.52) BS11 CA ? GO:0005509 ... Q91XX6 30971825
    121507 6e6b:B (4.52) BS12 CA ? GO:0005509 ... Q91XX6 30971825
    121508 6e6b:B (4.52) BS13 CA ? GO:0005509 ... Q91XX6 30971825
    121509 6e6b:B (4.52) BS14 CA ? GO:0005509 ... Q91XX6 30971825
    121510 6e6b:B (4.52) BS15 CA ? GO:0005509 ... Q91XX6 30971825
    121511 6e6c:A (1.9) BS02 CA 3.6.5.2 GO:0003924 ... P01112 31390567
    121512 6e6g:A (1.93) BS02 CA 3.6.5.2 GO:0003924 ... P01116 31390567
    121513 6e6i:A (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121514 6e6i:B (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121515 6e6i:C (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121516 6e6i:D (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121517 6e6i:E (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121518 6e6i:F (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121519 6e6i:G (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121520 6e6i:H (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121521 6e6i:I (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    121522 6e6p:C (1.93) BS02 MG 3.6.5.2 GO:0003924 ... P01112 31390567
    121523 6e6p:C (1.93) BS03 CA 3.6.5.2 GO:0003924 ... P01112 31390567
    121524 6e6v:A (2.25) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121525 6e6v:A (2.25) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121526 6e6w:A (2.35) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121527 6e6w:A (2.35) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121528 6e6x:A (2.5) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121529 6e6x:A (2.5) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    121530 6e70:A (1.992) BS02 CA ? GO:0005179 ... P02766 N/A
    121531 6e70:B (1.992) BS02 CA ? GO:0005179 ... P02766 N/A
    121532 6e7c:A (3.65) BS01 MG 3.6.5.- GO:0000226 ... P68363 30245156
    121533 6e7i:A (1.8) BS03 MN 2.4.1.41 N/A Q10471 32325029
    121534 6e7k:A (2.8) BS02 CA 3.1.1.32
    3.1.1.34    		 GO:0004465 ... P06858 30559189
    121535 6e7k:B (2.8) BS01 CA 3.1.1.32
    3.1.1.34    		 GO:0004465 ... P06858 30559189
    121536 6e83:B (-1.00) BS02 ZN ? GO:0008270 ... Q8IYH5 30217978
    121537 6e83:B (-1.00) BS03 ZN ? GO:0008270 ... Q8IYH5 30217978
    121538 6e86:B (-1.00) BS02 ZN ? GO:0008270 ... Q8IYH5 30217978
    121539 6e86:B (-1.00) BS03 ZN ? GO:0008270 ... Q8IYH5 30217978
    121540 6e87:A (1.952) BS01 FE2 1.13.11.20 GO:0000097 ... Q16878 30946568
    121541 6e8f:A (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    121542 6e8f:A (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    121543 6e8f:A (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    121544 6e8f:A (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    121545 6e8f:B (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    121546 6e8f:B (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    121547 6e8f:B (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    121548 6e8f:B (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    121549 6e8f:B (2.99) BS05 CA ? GO:0005509 ... Q96QU1 32963095
    121550 6e8f:C (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    121551 6e8f:C (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    121552 6e8f:C (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    121553 6e8f:C (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    121554 6e8p:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30721041
    121555 6e8x:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30721041
    121556 6e90:A (2.05) BS02 CA 1.1.1.8 GO:0004368 ... P21695 30640445
    121557 6e90:B (2.05) BS02 CA 1.1.1.8 GO:0004368 ... P21695 30640445
    121558 6e91:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30721041
    121559 6e92:A (1.772) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30721041
    121560 6e93:A (1.747) BS03 ZN ? N/A Q8NAP3 30355731
    121561 6e93:A (1.747) BS04 ZN ? N/A Q8NAP3 30355731
    121562 6e93:A (1.747) BS05 ZN ? N/A Q8NAP3 30355731
    121563 6e93:A (1.747) BS06 ZN ? N/A Q8NAP3 30355731
    121564 6e94:A (1.594) BS03 ZN ? N/A Q8NAP3 30355731
    121565 6e94:A (1.594) BS04 ZN ? N/A Q8NAP3 30355731
    121566 6e94:A (1.594) BS05 ZN ? N/A Q8NAP3 30355731
    121567 6e94:A (1.594) BS06 ZN ? N/A Q8NAP3 30355731
    121568 6ea1:A (1.815) BS01 ZN 3.4.11.- GO:0006508 ... O96935 30537832
    121569 6ea2:A (1.35) BS01 ZN 3.4.11.- GO:0006508 ... O96935 30537832
    121570 6ea4:A (2.45) BS02 ZN 3.4.11.- GO:0002250 ... Q6P179 N/A
    121571 6ea4:B (2.45) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 N/A
    121572 6eaa:A (1.65) BS01 ZN 3.4.11.- GO:0006508 ... O96935 30537832
    121573 6eab:A (1.85) BS01 ZN 3.4.11.- GO:0006508 ... O96935 30537832
    121574 6eac:A (2.269) BS01 MG 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121575 6eac:A (2.269) BS02 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121576 6eac:A (2.269) BS03 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121577 6eac:B (2.269) BS01 MG 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121578 6eac:B (2.269) BS02 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121579 6eac:B (2.269) BS03 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121580 6eac:C (2.269) BS01 MG 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121581 6eac:C (2.269) BS02 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121582 6eac:D (2.269) BS01 MG 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121583 6eac:D (2.269) BS02 CA 2.7.7.108 GO:0000287 ... Q87VB1 30270044
    121584 6eat:A (1.149) BS02 CA 3.4.21.4 GO:0004175 ... P00760 30817908
    121585 6eau:A (1.18) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    121586 6eav:A (1.391) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    121587 6eaw:A (1.289) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    121588 6eax:A (1.189) BS02 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    121589 6eb5:A (2.6) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    121590 6eb5:A (2.6) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    121591 6eb5:A (2.6) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    121592 6eb5:B (2.6) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    121593 6eb5:B (2.6) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    121594 6eb5:B (2.6) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    121595 6eb7:A (1.58) BS02 MN ? GO:0000160 ... A0A0H2UQ68 N/A
    121596 6ebe:A (1.88) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30433782
    121597 6ebo:A (1.58) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121598 6ebo:B (1.58) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121599 6ebo:C (1.58) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    121600 6ebo:D (1.58) BS01 CA 1.17.4.1 GO:0004748 ... F2I8X9 30224458
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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