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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    121001 6dp2:A (1.662) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121002 6dp3:A (1.461) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121003 6dp3:A (1.461) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121004 6dp4:A (1.374) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121005 6dp4:A (1.374) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121006 6dp5:A (1.432) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121007 6dp5:A (1.432) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121008 6dp6:A (1.403) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121009 6dp6:A (1.403) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121010 6dp7:A (1.381) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121011 6dp7:A (1.381) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121012 6dp7:A (1.381) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121013 6dp8:A (1.323) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121014 6dp9:A (1.4) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121015 6dp9:A (1.4) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121016 6dpa:A (1.489) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121017 6dpa:A (1.489) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121018 6dpb:A (1.324) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121019 6dpb:A (1.324) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121020 6dpb:A (1.324) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121021 6dpc:A (1.34) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121022 6dpc:A (1.34) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121023 6dpc:A (1.34) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121024 6dpd:A (1.46) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121025 6dpd:A (1.46) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121026 6dpd:A (1.46) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121027 6dpe:A (1.56) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121028 6dpe:A (1.56) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121029 6dpe:A (1.56) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121030 6dpf:A (1.56) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121031 6dpf:A (1.56) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121032 6dpf:A (1.56) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121033 6dpg:A (1.38) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121034 6dpg:A (1.38) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121035 6dpg:A (1.38) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121036 6dph:A (1.339) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121037 6dph:A (1.339) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121038 6dpi:A (1.347) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121039 6dpi:A (1.347) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121040 6dpj:A (1.55) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121041 6dpj:A (1.55) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121042 6dpk:A (1.391) BS04 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121043 6dpk:A (1.391) BS05 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121044 6dpk:A (1.391) BS06 MN 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121045 6dpl:A (1.45) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121046 6dpl:A (1.45) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121047 6dpm:A (1.677) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121048 6dpm:A (1.677) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121049 6dpn:A (1.493) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121050 6dpn:A (1.493) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121051 6dpo:A (1.45) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121052 6dpo:A (1.45) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121053 6dpp:A (1.45) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121054 6dpp:A (1.45) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121055 6dps:A (2.556) BS01 ZN 1.8.1.8 N/A C6S7X6 30181210
    121056 6dps:A (2.556) BS02 ZN 1.8.1.8 N/A C6S7X6 30181210
    121057 6dps:B (2.556) BS01 ZN 1.8.1.8 N/A C6S7X6 30181210
    121058 6dps:B (2.556) BS02 ZN 1.8.1.8 N/A C6S7X6 30181210
    121059 6dps:C (2.556) BS01 ZN 1.8.1.8 N/A C6S7X6 30181210
    121060 6dps:C (2.556) BS02 ZN 1.8.1.8 N/A C6S7X6 30181210
    121061 6dps:D (2.556) BS01 ZN 1.8.1.8 N/A C6S7X6 30181210
    121062 6dps:E (2.556) BS01 ZN 1.8.1.8 N/A C6S7X6 30181210
    121063 6dps:F (2.556) BS01 ZN 1.8.1.8 N/A C6S7X6 30181210
    121064 6dps:F (2.556) BS02 ZN 1.8.1.8 N/A C6S7X6 30181210
    121065 6dq3:A (1.78) BS01 ZN N/A GO:0005975 ... N/A N/A
    121066 6dq3:A (1.78) BS02 ZN N/A GO:0005975 ... N/A N/A
    121067 6dq3:B (1.78) BS01 ZN N/A GO:0005975 ... N/A N/A
    121068 6dq3:B (1.78) BS02 ZN N/A GO:0005975 ... N/A N/A
    121069 6dq3:B (1.78) BS03 ZN N/A GO:0005975 ... N/A N/A
    121070 6dq4:A (1.392) BS02 MN 1.14.11.67 N/A P29375 30392349
    121071 6dq5:A (1.89) BS02 MN 1.14.11.67 N/A P29375 30392349
    121072 6dq6:A (1.587) BS02 MN 1.14.11.67 N/A P29375 30392349
    121073 6dq7:A (1.852) BS02 MN 1.14.11.67 N/A P29375 N/A
    121074 6dq8:A (1.46) BS03 MN 1.14.11.67 N/A P29375 30392349
    121075 6dq9:A (1.748) BS02 MN 1.14.11.67 N/A P29375 30392349
    121076 6dqa:A (1.888) BS02 MN 1.14.11.67 N/A P29375 30392349
    121077 6dqb:A (1.791) BS04 MN 1.14.11.67 N/A P29375 30392349
    121078 6dqc:A (1.755) BS02 MN 1.14.11.67 N/A P29375 N/A
    121079 6dqd:A (1.987) BS02 MN 1.14.11.67 N/A P29375 N/A
    121080 6dqe:A (1.689) BS02 MN 1.14.11.67 N/A P29375 N/A
    121081 6dqf:A (1.688) BS02 MN 1.14.11.67 N/A P29375 N/A
    121082 6dqh:A (1.104) BS01 ZN N/A N/A N/A N/A
    121083 6dqj:A (3.49) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121084 6dqj:B (3.49) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121085 6dqj:C (3.49) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121086 6dqj:D (3.49) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121087 6dqn:A (3.33) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121088 6dqn:B (3.33) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121089 6dqn:C (3.33) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121090 6dqn:D (3.33) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121091 6dqs:A (4.12) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121092 6dqs:B (4.12) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121093 6dqs:C (4.12) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121094 6dqs:D (4.12) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121095 6dqv:A (3.82) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121096 6dqv:B (3.82) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121097 6dqv:C (3.82) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121098 6dqv:D (3.82) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121099 6dqy:A (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121100 6dqy:B (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121101 6dqy:C (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121102 6dqy:D (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121103 6dqy:E (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121104 6dqy:F (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121105 6dqy:G (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121106 6dqy:H (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121107 6dqy:I (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121108 6dqy:J (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121109 6dqy:K (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121110 6dqy:L (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121111 6dqy:M (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121112 6dqy:N (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121113 6dqy:O (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121114 6dqy:P (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121115 6dqy:Q (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121116 6dqy:R (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121117 6dqy:S (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121118 6dqy:T (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121119 6dqy:U (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121120 6dqy:V (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121121 6dqy:W (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121122 6dqy:X (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    121123 6dqz:A (6.01) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121124 6dqz:B (6.01) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121125 6dqz:C (6.01) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121126 6dqz:D (6.01) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121127 6dr0:A (4.47) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121128 6dr0:B (4.47) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121129 6dr0:C (4.47) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121130 6dr0:D (4.47) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121131 6dr2:A (4.33) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121132 6dr2:A (4.33) BS02 CA ? GO:0000822 ... Q14573 30013099
    121133 6dr2:A (4.33) BS03 CA ? GO:0000822 ... Q14573 30013099
    121134 6dr2:B (4.33) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121135 6dr2:B (4.33) BS02 CA ? GO:0000822 ... Q14573 30013099
    121136 6dr2:B (4.33) BS03 CA ? GO:0000822 ... Q14573 30013099
    121137 6dr2:C (4.33) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121138 6dr2:C (4.33) BS02 CA ? GO:0000822 ... Q14573 30013099
    121139 6dr2:C (4.33) BS03 CA ? GO:0000822 ... Q14573 30013099
    121140 6dr2:D (4.33) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121141 6dr2:D (4.33) BS02 CA ? GO:0000822 ... Q14573 30013099
    121142 6dr2:D (4.33) BS03 CA ? GO:0000822 ... Q14573 30013099
    121143 6dr8:A (1.476) BS01 ZN N/A N/A N/A N/A
    121144 6dr8:A (1.476) BS02 ZN N/A N/A N/A N/A
    121145 6dra:A (3.96) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121146 6dra:A (3.96) BS02 CA ? GO:0000822 ... Q14573 30013099
    121147 6dra:A (3.96) BS03 CA ? GO:0000822 ... Q14573 30013099
    121148 6dra:B (3.96) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121149 6dra:B (3.96) BS02 CA ? GO:0000822 ... Q14573 30013099
    121150 6dra:B (3.96) BS03 CA ? GO:0000822 ... Q14573 30013099
    121151 6dra:C (3.96) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121152 6dra:C (3.96) BS02 CA ? GO:0000822 ... Q14573 30013099
    121153 6dra:C (3.96) BS03 CA ? GO:0000822 ... Q14573 30013099
    121154 6dra:D (3.96) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121155 6dra:D (3.96) BS02 CA ? GO:0000822 ... Q14573 30013099
    121156 6dra:D (3.96) BS03 CA ? GO:0000822 ... Q14573 30013099
    121157 6drc:A (3.92) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121158 6drc:A (3.92) BS03 CA ? GO:0000822 ... Q14573 30013099
    121159 6drc:A (3.92) BS04 CA ? GO:0000822 ... Q14573 30013099
    121160 6drc:B (3.92) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121161 6drc:B (3.92) BS03 CA ? GO:0000822 ... Q14573 30013099
    121162 6drc:B (3.92) BS04 CA ? GO:0000822 ... Q14573 30013099
    121163 6drc:C (3.92) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121164 6drc:C (3.92) BS03 CA ? GO:0000822 ... Q14573 30013099
    121165 6drc:C (3.92) BS04 CA ? GO:0000822 ... Q14573 30013099
    121166 6drc:D (3.92) BS01 ZN ? GO:0000822 ... Q14573 30013099
    121167 6drc:D (3.92) BS03 CA ? GO:0000822 ... Q14573 30013099
    121168 6drc:D (3.92) BS04 CA ? GO:0000822 ... Q14573 30013099
    121169 6drd:C (3.9) BS01 ZN ? GO:0000428 ... P19387 30190596
    121170 6drd:I (3.9) BS01 ZN ? GO:0000428 ... P36954 30190596
    121171 6drd:I (3.9) BS02 ZN ? GO:0000428 ... P36954 30190596
    121172 6drd:J (3.9) BS01 ZN ? GO:0000428 ... P62875 30190596
    121173 6drd:L (3.9) BS01 ZN ? GO:0000428 ... P53803 30190596
    121174 6dre:A (1.8) BS01 MG 3.2.2.19 GO:0003875 ... A8GG79 30343895
    121175 6drh:C (2.299) BS01 MG 3.2.2.19 GO:0003875 ... A8GG79 30343895
    121176 6drj:A (3.3) BS02 CA ? GO:0005216 ... A0A0R4IMY7 30250252
    121177 6drj:B (3.3) BS02 CA ? GO:0005216 ... A0A0R4IMY7 30250252
    121178 6drj:C (3.3) BS02 CA ? GO:0005216 ... A0A0R4IMY7 30250252
    121179 6drj:D (3.3) BS02 CA ? GO:0005216 ... A0A0R4IMY7 30250252
    121180 6ds1:B (2.119) BS02 MG ? GO:0000166 ... Q0PB28 31925306
    121181 6ds1:D (2.119) BS02 MG ? GO:0000166 ... Q0PB28 31925306
    121182 6ds2:A (2.1) BS01 NI ? GO:0002523 ... P05109 29890074
    121183 6ds2:B (2.1) BS01 NI ? GO:0002523 ... P06702 29890074
    121184 6ds2:C (2.1) BS01 NI ? GO:0002523 ... P05109 29890074
    121185 6ds2:C (2.1) BS02 NI ? GO:0002523 ... P05109 29890074
    121186 6ds2:D (2.1) BS01 NI ? GO:0002523 ... P06702 29890074
    121187 6ds2:D (2.1) BS02 NI ? GO:0002523 ... P06702 29890074
    121188 6ds2:E (2.1) BS01 NI ? GO:0002523 ... P05109 29890074
    121189 6ds2:E (2.1) BS02 NI ? GO:0002523 ... P05109 29890074
    121190 6ds2:F (2.1) BS01 NI ? GO:0002523 ... P06702 29890074
    121191 6ds2:F (2.1) BS02 NI ? GO:0002523 ... P06702 29890074
    121192 6ds2:G (2.1) BS01 NI ? GO:0002523 ... P05109 29890074
    121193 6ds2:H (2.1) BS01 NI ? GO:0002523 ... P06702 29890074
    121194 6ds6:A (1.95) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 30150647
    121195 6ds6:A (1.95) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 30150647
    121196 6dsu:A (1.98) BS03 MG 2.7.7.7 GO:0000166 ... E1C9K5 30338759
    121197 6dsv:A (1.99) BS03 MG 2.7.7.7 GO:0000166 ... E1C9K5 30338759
    121198 6dsw:A (1.589) BS03 MG 2.7.7.7 GO:0000166 ... E1C9K5 30338759
    121199 6dsy:A (1.98) BS03 MG 2.7.7.7 GO:0000166 ... E1C9K5 30338759
    121200 6dti:J (3.54) BS02 MG ? GO:0000049 ... Q5SHN7 31945376
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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