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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    120801 6dhy:D (2.22) BS02 ZN ? GO:0005506 ... P0ABE7 29996654
    120802 6dhz:A (2.8) BS02 CA ? GO:0005506 ... P0ABE7 29996654
    120803 6dhz:A (2.8) BS03 CA ? GO:0005506 ... P0ABE7 29996654
    120804 6dhz:B (2.8) BS02 CA ? GO:0005506 ... P0ABE7 29996654
    120805 6dhz:C (2.8) BS02 CA ? GO:0005506 ... P0ABE7 29996654
    120806 6dhz:D (2.8) BS02 CA ? GO:0005506 ... P0ABE7 29996654
    120807 6di7:A (2.3) BS02 MG ? GO:0003924 ... G0SFF0 30087125
    120808 6dia:A (1.969) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30649431
    120809 6dic:A (1.992) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30649431
    120810 6dic:A (1.992) BS06 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30649431
    120811 6diq:A (1.579) BS02 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 N/A
    120812 6dir:A (1.751) BS02 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 N/A
    120813 6dis:A (1.921) BS02 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 N/A
    120814 6dit:A (1.789) BS02 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 N/A
    120815 6diu:A (1.868) BS01 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 N/A
    120816 6div:A (1.83) BS02 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 N/A
    120817 6diw:A (1.8) BS02 ZN 3.6.4.13 GO:0006508 ... A0A0B4WYC6 N/A
    120818 6dja:A (2.48) BS01 ZN 3.5.2.6 GO:0008270 ... P14488 31009467
    120819 6dja:A (2.48) BS02 ZN 3.5.2.6 GO:0008270 ... P14488 31009467
    120820 6djq:A (3.1) BS03 MG ? GO:0003924 ... G0SFF0 30087125
    120821 6djq:B (3.1) BS03 MG ? GO:0003924 ... G0SFF0 30087125
    120822 6djq:C (3.1) BS03 MG ? GO:0003924 ... G0SFF0 30087125
    120823 6djq:D (3.1) BS03 MG ? GO:0003924 ... G0SFF0 30087125
    120824 6djw:A (3.801) BS01 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120825 6djw:A (3.801) BS02 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120826 6djw:A (3.801) BS03 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120827 6djw:A (3.801) BS04 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120828 6djw:A (3.801) BS05 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120829 6djw:A (3.801) BS06 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120830 6djx:A (4.801) BS01 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120831 6djx:A (4.801) BS02 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120832 6djx:A (4.801) BS03 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120833 6djx:A (4.801) BS04 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120834 6djx:A (4.801) BS05 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120835 6djx:A (4.801) BS06 ZN 2.3.2.31 GO:0004842 ... A0A034W4L8 29967542
    120836 6dk4:A (2.71) BS01 MN ? GO:0000976 ... Q0PBI7 29856899
    120837 6dk4:A (2.71) BS02 ZN ? GO:0000976 ... Q0PBI7 29856899
    120838 6dk4:B (2.71) BS01 MN ? GO:0000976 ... Q0PBI7 29856899
    120839 6dk4:B (2.71) BS02 ZN ? GO:0000976 ... Q0PBI7 29856899
    120840 6dk7:B (2.6) BS01 CO 2.7.13.3 GO:0000155 ... Q9HUV7 30879888
    120841 6dk7:D (2.6) BS01 CO 2.7.13.3 GO:0000155 ... Q9HUV7 30879888
    120842 6dk7:F (2.6) BS01 CO 2.7.13.3 GO:0000155 ... Q9HUV7 30879888
    120843 6dk7:F (2.6) BS02 CO 2.7.13.3 GO:0000155 ... Q9HUV7 30879888
    120844 6dk7:G (2.6) BS01 CO 2.7.13.3 GO:0000155 ... Q9HUV7 30879888
    120845 6dk7:H (2.6) BS01 CO 2.7.13.3 GO:0000155 ... Q9HUV7 30879888
    120846 6dk9:A (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120847 6dk9:B (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120848 6dk9:C (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120849 6dk9:D (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120850 6dk9:E (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120851 6dk9:F (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120852 6dk9:G (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120853 6dk9:H (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120854 6dk9:I (2.6) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120855 6dka:A (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120856 6dka:B (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120857 6dka:C (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120858 6dka:D (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120859 6dka:E (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120860 6dka:F (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120861 6dka:G (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120862 6dka:H (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120863 6dka:I (2.901) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120864 6dkc:A (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120865 6dkc:B (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120866 6dkc:C (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120867 6dkc:D (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120868 6dkc:E (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120869 6dkc:F (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120870 6dkc:G (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120871 6dkc:H (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120872 6dkc:I (2.9) BS01 ZN 4.2.1.69 GO:0046872 ... A7A1Y4 31152065
    120873 6dkd:A (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120874 6dkd:B (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120875 6dkd:C (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120876 6dkd:D (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120877 6dkd:E (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120878 6dkd:F (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120879 6dkd:G (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120880 6dkd:H (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120881 6dkd:I (3.0) BS01 ZN ? GO:0046872 ... A7A1Y4 31152065
    120882 6dkh:A (2.608) BS01 ZN 1.1.1.264 GO:0005515 ... P39346 N/A
    120883 6dkh:B (2.608) BS01 ZN 1.1.1.264 GO:0005515 ... P39346 N/A
    120884 6dkh:C (2.608) BS01 ZN 1.1.1.264 GO:0005515 ... P39346 N/A
    120885 6dkh:D (2.608) BS01 ZN 1.1.1.264 GO:0005515 ... P39346 N/A
    120886 6dko:A (1.556) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    120887 6dkt:A (2.08) BS01 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120888 6dkt:A (2.08) BS02 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120889 6dkt:B (2.08) BS01 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120890 6dkt:B (2.08) BS02 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120891 6dkt:C (2.08) BS01 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120892 6dkt:C (2.08) BS02 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120893 6dkt:D (2.08) BS01 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120894 6dkt:D (2.08) BS02 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120895 6dkt:E (2.08) BS01 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120896 6dkt:E (2.08) BS02 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120897 6dkt:F (2.08) BS01 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120898 6dkt:F (2.08) BS02 MN 3.5.3.1 GO:0000050 ... P39138 N/A
    120899 6dl9:A (1.8) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    120900 6dlh:A (2.2) BS01 CA ? GO:0005509 ... Q08I46 30282808
    120901 6dlh:A (2.2) BS02 CA ? GO:0005509 ... Q08I46 30282808
    120902 6dlh:A (2.2) BS03 CA ? GO:0005509 ... Q08I46 30282808
    120903 6dlh:A (2.2) BS04 CA ? GO:0005509 ... Q08I46 30282808
    120904 6dlh:A (2.2) BS05 CA ? GO:0005509 ... Q08I46 30282808
    120905 6dlj:A (2.604) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    120906 6dlu:B (3.75) BS01 MG 3.6.5.5 GO:0003924 ... Q05193 30069048
    120907 6dlu:P (3.75) BS01 MG 3.6.5.5 GO:0003924 ... Q05193 30069048
    120908 6dmf:A (2.4) BS05 MG N/A N/A N/A 31062073
    120909 6dmf:B (2.4) BS02 MG N/A N/A N/A 31062073
    120910 6dmf:C (2.4) BS04 MG N/A N/A N/A 31062073
    120911 6dmf:D (2.4) BS05 MG N/A N/A N/A 31062073
    120912 6dmf:E (2.4) BS04 MG N/A N/A N/A 31062073
    120913 6dmf:F (2.4) BS04 MG N/A N/A N/A 31062073
    120914 6dmf:G (2.4) BS04 MG N/A N/A N/A 31062073
    120915 6dmf:H (2.4) BS03 MG N/A N/A N/A 31062073
    120916 6dmf:I (2.4) BS03 MG N/A N/A N/A 31062073
    120917 6dmf:J (2.4) BS03 MG N/A N/A N/A 31062073
    120918 6dmn:A (1.27) BS04 CA 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120919 6dmn:A (1.27) BS05 CA 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120920 6dms:A (2.85) BS01 CA ? GO:0005509 ... Q08I46 30282808
    120921 6dms:A (2.85) BS02 CA ? GO:0005509 ... Q08I46 30282808
    120922 6dmv:A (1.52) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120923 6dmv:A (1.52) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120924 6dmw:E (4.4) BS01 CA ? GO:0000086 ... P0DP29 30305626
    120925 6dmw:E (4.4) BS02 CA ? GO:0000086 ... P0DP29 30305626
    120926 6dmw:E (4.4) BS03 CA ? GO:0000086 ... P0DP29 30305626
    120927 6dmy:B (3.6) BS02 ZN 3.1.-.- GO:0007267 ... Q15465 29954986
    120928 6dmy:B (3.6) BS03 CA 3.1.-.- GO:0007267 ... Q15465 29954986
    120929 6dmy:B (3.6) BS04 CA 3.1.-.- GO:0007267 ... Q15465 29954986
    120930 6dnh:C (3.4) BS02 ZN ? GO:0003676 ... O95639 29208711
    120931 6dnh:C (3.4) BS03 ZN ? GO:0003676 ... O95639 29208711
    120932 6dnh:C (3.4) BS04 ZN ? GO:0003676 ... O95639 29208711
    120933 6dnl:A (1.7) BS01 ZN 1.8.1.8 N/A Q9JYM0 30181210
    120934 6dnl:A (1.7) BS02 ZN 1.8.1.8 N/A Q9JYM0 30181210
    120935 6dnl:A (1.7) BS03 ZN 1.8.1.8 N/A Q9JYM0 30181210
    120936 6dnl:A (1.7) BS04 ZN 1.8.1.8 N/A Q9JYM0 30181210
    120937 6dnp:A (1.711) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    120938 6dns:A (2.24) BS01 CA ? GO:0005509 ... Q08I46 30282808
    120939 6dns:A (2.24) BS02 CA ? GO:0005509 ... Q08I46 30282808
    120940 6dns:A (2.24) BS03 CA ? GO:0005509 ... Q08I46 30282808
    120941 6dns:A (2.24) BS04 CA ? GO:0005509 ... Q08I46 30282808
    120942 6dnt:A (1.66) BS03 ZN ? GO:0000166 ... D3E402 30242905
    120943 6dnw:A (2.849) BS03 ZN ? GO:0000150 ... Q928V6 30227134
    120944 6do8:A (1.414) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120945 6do8:A (1.414) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120946 6do9:A (1.36) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120947 6do9:A (1.36) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120948 6doa:A (1.474) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120949 6doa:A (1.474) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120950 6dob:A (1.343) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120951 6dob:A (1.343) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120952 6doc:A (1.496) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120953 6doc:A (1.496) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120954 6dod:A (1.535) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120955 6dod:A (1.535) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120956 6doe:A (1.451) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120957 6doe:A (1.451) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120958 6dof:A (1.433) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120959 6dof:A (1.433) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120960 6dog:A (1.285) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120961 6dog:A (1.285) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120962 6doh:A (1.363) BS04 CA 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120963 6doi:A (1.948) BS04 CA 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120964 6doj:A (1.403) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120965 6doj:A (1.403) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120966 6dok:A (1.38) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120967 6dok:A (1.38) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120968 6dol:A (1.433) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120969 6dol:A (1.433) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120970 6dom:A (1.425) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120971 6dom:A (1.425) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120972 6don:A (1.422) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120973 6don:A (1.422) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120974 6doo:A (1.44) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120975 6doo:A (1.44) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120976 6dop:A (1.25) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120977 6dop:A (1.25) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120978 6doq:A (1.422) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120979 6doq:A (1.422) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120980 6dor:A (1.5) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120981 6dor:A (1.5) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120982 6dos:A (1.318) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120983 6dos:A (1.318) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120984 6dot:A (1.423) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120985 6dot:A (1.423) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120986 6dou:A (1.487) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120987 6dou:A (1.487) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120988 6dov:A (1.521) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120989 6dov:A (1.521) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120990 6dow:A (1.495) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120991 6dow:A (1.495) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120992 6dox:A (1.45) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120993 6dox:A (1.45) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120994 6doz:A (1.573) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120995 6doz:A (1.573) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120996 6dp0:A (1.451) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120997 6dp0:A (1.451) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120998 6dp1:A (1.42) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    120999 6dp1:A (1.42) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    121000 6dp2:A (1.662) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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