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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    120201 6cx0:A (3.501) BS01 CA ? GO:0000325 ... Q94KI8 30190435
    120202 6cx0:A (3.501) BS02 CA ? GO:0000325 ... Q94KI8 30190435
    120203 6cx0:A (3.501) BS03 CA ? GO:0000325 ... Q94KI8 30190435
    120204 6cx0:A (3.501) BS04 CA ? GO:0000325 ... Q94KI8 30190435
    120205 6cx8:A (2.41) BS01 MN 2.3.1.57 GO:0000287 ... Q9KL03 N/A
    120206 6cx8:B (2.41) BS01 MN 2.3.1.57 GO:0000287 ... Q9KL03 N/A
    120207 6cx8:C (2.41) BS01 MN 2.3.1.57 GO:0000287 ... Q9KL03 N/A
    120208 6cx8:D (2.41) BS01 MN 2.3.1.57 GO:0000287 ... Q9KL03 N/A
    120209 6cx8:E (2.41) BS01 MN 2.3.1.57 GO:0000287 ... Q9KL03 N/A
    120210 6cx8:F (2.41) BS01 MN 2.3.1.57 GO:0000287 ... Q9KL03 N/A
    120211 6cxb:A (1.701) BS01 MG N/A N/A N/A 30721244
    120212 6cxh:A (2.704) BS01 CU 1.14.13.25 N/A G4SZ64 29739854
    120213 6cxo:A (2.2) BS01 CA ? GO:0001906 ... P06683 30111885
    120214 6cxo:A (2.2) BS02 MG ? GO:0001906 ... P06683 30111885
    120215 6cxo:B (2.2) BS01 CA ? GO:0001906 ... P06683 30111885
    120216 6cxx:A (1.26) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 30018019
    120217 6cxx:A (1.26) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 30018019
    120218 6cxx:B (1.26) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 30018019
    120219 6cxx:B (1.26) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 30018019
    120220 6cxy:C (2.2) BS01 CA ? GO:0005509 ... P12830 N/A
    120221 6cxy:C (2.2) BS02 CA ? GO:0005509 ... P12830 N/A
    120222 6cxy:C (2.2) BS03 CA ? GO:0005509 ... P12830 N/A
    120223 6cy3:A (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 30018019
    120224 6cy3:A (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 30018019
    120225 6cy9:A (2.615) BS01 MG 3.6.4.- GO:0000166 ... A2T3P0 30509975
    120226 6cyb:A (1.62) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 30128073
    120227 6cyb:B (1.62) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 30128073
    120228 6cyc:A (1.54) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 30128073
    120229 6cyc:B (1.54) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 30128073
    120230 6cyd:A (1.69) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 30128073
    120231 6cyd:B (1.69) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 30128073
    120232 6cyg:A (1.50392) BS02 MG 3.6.4.10 GO:0005524 ... P07900 31501246
    120233 6cyg:B (1.50392) BS01 MG 3.6.4.10 GO:0005524 ... P07900 31501246
    120234 6cyh:A (1.49) BS02 MG 3.6.4.10 GO:0005524 ... P07900 31501246
    120235 6cyl:A (1.8) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120236 6cyl:B (1.8) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120237 6cyl:C (1.8) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120238 6cyl:D (1.8) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120239 6cyp:A (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120240 6cyp:B (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120241 6cyp:C (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120242 6cyp:D (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120243 6cyp:E (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120244 6cyp:F (2.0) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120245 6cys:A (1.85) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120246 6cys:B (1.85) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120247 6cys:C (1.85) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120248 6cys:D (1.85) BS01 FE 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120249 6cyt:D (3.5) BS01 ZN ? GO:0001070 ... P04608 30514815
    120250 6cyx:A (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120251 6cyx:B (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120252 6cyx:C (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120253 6cyx:D (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120254 6cyx:E (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120255 6cyx:F (2.3) BS01 MN 1.15.1.1 GO:0004784 ... G0RQS7 N/A
    120256 6czb:A (2.4) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120257 6czb:B (2.4) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120258 6czb:C (2.4) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120259 6czb:D (2.4) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120260 6czc:A (2.3) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120261 6czc:B (2.3) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120262 6czc:C (2.3) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120263 6czc:D (2.3) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120264 6czd:A (2.4) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    120265 6czd:B (2.4) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    120266 6czd:C (2.4) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    120267 6czd:D (2.4) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    120268 6cze:A (2.3) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120269 6cze:B (2.3) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120270 6cze:C (2.3) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120271 6cze:D (2.3) BS02 MG 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    120272 6czo:A (2.95) BS03 MN 3.1.3.16 GO:0016787 ... P62136 30100357
    120273 6czo:A (2.95) BS04 MN 3.1.3.16 GO:0016787 ... P62136 30100357
    120274 6czo:C (2.95) BS02 MN 3.1.3.16 GO:0016787 ... P62136 30100357
    120275 6czo:C (2.95) BS03 MN 3.1.3.16 GO:0016787 ... P62136 30100357
    120276 6czq:R (2.2) BS01 CA ? GO:0000086 ... P0DP29 30013223
    120277 6czq:R (2.2) BS02 CA ? GO:0000086 ... P0DP29 30013223
    120278 6czr:10 (3.14) BS03 MG ? GO:0003735 ... P60493 N/A
    120279 6czr:10 (3.14) BS04 MG ? GO:0003735 ... P60493 N/A
    120280 6czr:13 (3.14) BS03 MG ? GO:0003735 ... Q5SHQ6 N/A
    120281 6czr:15 (3.14) BS02 MG ? GO:0003735 ... P80339 N/A
    120282 6czr:15 (3.14) BS03 ZN ? GO:0003735 ... P80339 N/A
    120283 6czr:16 (3.14) BS02 ZN ? GO:0000049 ... P35871 N/A
    120284 6czr:17 (3.14) BS02 MG ? GO:0003735 ... P80340 N/A
    120285 6czr:18 (3.14) BS02 MG ? GO:0003735 ... Q5SKU1 N/A
    120286 6czr:18 (3.14) BS03 MG ? GO:0003735 ... Q5SKU1 N/A
    120287 6czr:19 (3.14) BS02 ZN ? GO:0003735 ... Q5SHR2 N/A
    120288 6czr:1D (3.14) BS03 MG ? GO:0002181 ... P60405 N/A
    120289 6czr:1D (3.14) BS04 MG ? GO:0002181 ... P60405 N/A
    120290 6czr:1D (3.14) BS05 MG ? GO:0002181 ... P60405 N/A
    120291 6czr:1D (3.14) BS06 MG ? GO:0002181 ... P60405 N/A
    120292 6czr:1D (3.14) BS07 MG ? GO:0002181 ... P60405 N/A
    120293 6czr:1D (3.14) BS08 MG ? GO:0002181 ... P60405 N/A
    120294 6czr:1D (3.14) BS09 MG ? GO:0002181 ... P60405 N/A
    120295 6czr:1D (3.14) BS10 MG ? GO:0002181 ... P60405 N/A
    120296 6czr:1E (3.14) BS02 MG ? GO:0003735 ... Q5SHN8 N/A
    120297 6czr:1E (3.14) BS03 MG ? GO:0003735 ... Q5SHN8 N/A
    120298 6czr:1E (3.14) BS04 MG ? GO:0003735 ... Q5SHN8 N/A
    120299 6czr:1E (3.14) BS05 MG ? GO:0003735 ... Q5SHN8 N/A
    120300 6czr:1F (3.14) BS02 MG ? GO:0003735 ... Q5SHN9 N/A
    120301 6czr:1F (3.14) BS03 MG ? GO:0003735 ... Q5SHN9 N/A
    120302 6czr:1F (3.14) BS04 MG ? GO:0003735 ... Q5SHN9 N/A
    120303 6czr:1F (3.14) BS05 MG ? GO:0003735 ... Q5SHN9 N/A
    120304 6czr:1G (3.14) BS03 MG ? GO:0000049 ... Q5SHQ0 N/A
    120305 6czr:1N (3.14) BS02 MG ? GO:0003729 ... P60488 N/A
    120306 6czr:1N (3.14) BS03 MG ? GO:0003729 ... P60488 N/A
    120307 6czr:1P (3.14) BS02 MG ? GO:0003735 ... Q5SHQ7 N/A
    120308 6czr:1Q (3.14) BS04 MG ? GO:0000049 ... P60489 N/A
    120309 6czr:1U (3.14) BS02 MG ? GO:0000027 ... P60491 N/A
    120310 6czr:1V (3.14) BS02 MG ? GO:0003723 ... P60492 N/A
    120311 6czr:1V (3.14) BS03 MG ? GO:0003723 ... P60492 N/A
    120312 6czr:1V (3.14) BS04 MG ? GO:0003723 ... P60492 N/A
    120313 6czr:1Y (3.14) BS02 ZN ? GO:0003723 ... Q5SHP9 N/A
    120314 6czr:1Z (3.14) BS03 MG ? GO:0003723 ... Q5SHZ1 N/A
    120315 6czr:1b (3.14) BS02 MG ? GO:0003735 ... P80371 N/A
    120316 6czr:1k (3.14) BS02 MG ? GO:0003735 ... P80376 N/A
    120317 6czr:1l (3.14) BS02 MG ? GO:0000049 ... Q5SHN3 N/A
    120318 6czr:1m (3.14) BS02 MG ? GO:0000049 ... P80377 N/A
    120319 6czr:1s (3.14) BS02 MG ? GO:0003723 ... Q5SHP2 N/A
    120320 6czr:1t (3.14) BS02 MG ? GO:0003723 ... P80380 N/A
    120321 6czr:25 (3.14) BS02 MG ? GO:0003735 ... P80339 N/A
    120322 6czr:25 (3.14) BS03 ZN ? GO:0003735 ... P80339 N/A
    120323 6czr:26 (3.14) BS02 ZN ? GO:0000049 ... P35871 N/A
    120324 6czr:28 (3.14) BS02 MG ? GO:0003735 ... Q5SKU1 N/A
    120325 6czr:28 (3.14) BS03 MG ? GO:0003735 ... Q5SKU1 N/A
    120326 6czr:29 (3.14) BS02 ZN ? GO:0003735 ... Q5SHR2 N/A
    120327 6czr:2D (3.14) BS03 MG ? GO:0002181 ... P60405 N/A
    120328 6czr:2E (3.14) BS02 MG ? GO:0003735 ... Q5SHN8 N/A
    120329 6czr:2F (3.14) BS02 MG ? GO:0003735 ... Q5SHN9 N/A
    120330 6czr:2F (3.14) BS03 MG ? GO:0003735 ... Q5SHN9 N/A
    120331 6czr:2F (3.14) BS04 MG ? GO:0003735 ... Q5SHN9 N/A
    120332 6czr:2G (3.14) BS03 MG ? GO:0000049 ... Q5SHQ0 N/A
    120333 6czr:2I (3.14) BS02 MG ? GO:0003735 ... Q5SLQ1 N/A
    120334 6czr:2I (3.14) BS03 MG ? GO:0003735 ... Q5SLQ1 N/A
    120335 6czr:2R (3.14) BS02 MG ? GO:0003735 ... Q9Z9H5 N/A
    120336 6czr:2V (3.14) BS02 MG ? GO:0003723 ... P60492 N/A
    120337 6czr:2V (3.14) BS03 MG ? GO:0003723 ... P60492 N/A
    120338 6czr:2W (3.14) BS02 MG ? GO:0003735 ... Q5SHP3 N/A
    120339 6czr:2W (3.14) BS03 MG ? GO:0003735 ... Q5SHP3 N/A
    120340 6czr:2Y (3.14) BS02 ZN ? GO:0003723 ... Q5SHP9 N/A
    120341 6czr:2Z (3.14) BS03 MG ? GO:0003723 ... Q5SHZ1 N/A
    120342 6czr:2f (3.14) BS02 MG ? GO:0003735 ... Q5SLP8 N/A
    120343 6czr:2n (3.14) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    120344 6czr:2t (3.14) BS02 MG ? GO:0003723 ... P80380 N/A
    120345 6d03:A (3.68) BS01 CA ? GO:0004998 ... P02786 29950717
    120346 6d03:B (3.68) BS01 CA ? GO:0004998 ... P02786 29950717
    120347 6d03:C (3.68) BS01 FE ? GO:0005576 ... P02787 29950717
    120348 6d03:C (3.68) BS03 FE ? GO:0005576 ... P02787 29950717
    120349 6d03:D (3.68) BS01 FE ? GO:0005576 ... P02787 29950717
    120350 6d03:D (3.68) BS03 FE ? GO:0005576 ... P02787 29950717
    120351 6d04:A (3.74) BS01 CA ? GO:0004998 ... P02786 29950717
    120352 6d04:B (3.74) BS01 CA ? GO:0004998 ... P02786 29950717
    120353 6d04:C (3.74) BS01 FE ? GO:0005576 ... P02787 29950717
    120354 6d04:C (3.74) BS03 FE ? GO:0005576 ... P02787 29950717
    120355 6d04:D (3.74) BS01 FE ? GO:0005576 ... P02787 29950717
    120356 6d04:D (3.74) BS03 FE ? GO:0005576 ... P02787 29950717
    120357 6d05:A (3.8) BS01 CA ? GO:0004998 ... P02786 29950717
    120358 6d05:B (3.8) BS01 CA ? GO:0004998 ... P02786 29950717
    120359 6d05:C (3.8) BS01 FE ? GO:0005576 ... P02787 29950717
    120360 6d05:C (3.8) BS03 FE ? GO:0005576 ... P02787 29950717
    120361 6d05:D (3.8) BS01 FE ? GO:0005576 ... P02787 29950717
    120362 6d05:D (3.8) BS03 FE ? GO:0005576 ... P02787 29950717
    120363 6d06:A (2.55) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 30581135
    120364 6d06:D (2.55) BS02 ZN 3.5.4.37 GO:0003723 ... P78563 30581135
    120365 6d0g:A (1.78) BS01 MN 1.13.11.24 GO:0008127 ... V5VHS3 N/A
    120366 6d0o:A (2.3) BS01 CO 1.14.11.44 GO:0005737 ... Q8KSC8 30828945
    120367 6d0o:B (2.3) BS01 CO 1.14.11.44 GO:0005737 ... Q8KSC8 30828945
    120368 6d0o:C (2.3) BS01 CO 1.14.11.44 GO:0005737 ... Q8KSC8 30828945
    120369 6d0o:D (2.3) BS01 CO 1.14.11.44 GO:0005737 ... Q8KSC8 30828945
    120370 6d0p:A (1.88) BS01 MN ? GO:0008127 ... A0A0C0C2K2 N/A
    120371 6d0p:B (1.88) BS01 MN ? GO:0008127 ... A0A0C0C2K2 N/A
    120372 6d0p:C (1.88) BS01 MN ? GO:0008127 ... A0A0C0C2K2 N/A
    120373 6d0p:D (1.88) BS01 MN ? GO:0008127 ... A0A0C0C2K2 N/A
    120374 6d0y:C (2.676) BS02 MG ? GO:0000184 ... Q09161 29654059
    120375 6d0z:A (1.75) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 30140014
    120376 6d0z:A (1.75) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 30140014
    120377 6d14:A (2.5) BS02 CA ? GO:0005524 ... A8WFV1 29991590
    120378 6d14:B (2.5) BS02 CA ? GO:0005524 ... A8WFV1 29991590
    120379 6d1a:A (1.25) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120380 6d1a:A (1.25) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120381 6d1b:A (1.25) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120382 6d1b:A (1.25) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120383 6d1c:A (1.25) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120384 6d1c:A (1.25) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120385 6d1d:A (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120386 6d1d:A (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120387 6d1e:A (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120388 6d1e:A (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120389 6d1f:A (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120390 6d1f:A (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120391 6d1g:A (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120392 6d1g:A (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120393 6d1h:A (1.25) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120394 6d1h:A (1.25) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120395 6d1i:A (1.1) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120396 6d1i:A (1.1) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120397 6d1j:A (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120398 6d1j:A (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120399 6d1k:A (1.2) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651
    120400 6d1k:A (1.2) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 31483651

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218