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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 1bc1:A (2.05) BS05 CA ? GO:0001786 ... P14668 9609693
    1002 1bc2:A (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    1003 1bc2:A (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    1004 1bc2:B (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    1005 1bc2:B (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    1006 1bc3:A (1.95) BS01 CA ? GO:0001786 ... P14668 9609693
    1007 1bc3:A (1.95) BS02 CA ? GO:0001786 ... P14668 9609693
    1008 1bc3:A (1.95) BS03 CA ? GO:0001786 ... P14668 9609693
    1009 1bc3:A (1.95) BS04 CA ? GO:0001786 ... P14668 9609693
    1010 1bc3:A (1.95) BS05 CA ? GO:0001786 ... P14668 9609693
    1011 1bcd:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 8070585
    1012 1bcf:A (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1013 1bcf:A (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1014 1bcf:B (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1015 1bcf:B (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1016 1bcf:C (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1017 1bcf:C (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1018 1bcf:D (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1019 1bcf:D (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1020 1bcf:E (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1021 1bcf:E (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1022 1bcf:F (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1023 1bcf:F (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1024 1bcf:G (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1025 1bcf:G (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1026 1bcf:H (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1027 1bcf:H (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1028 1bcf:I (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1029 1bcf:I (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1030 1bcf:J (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1031 1bcf:J (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1032 1bcf:K (2.9) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1033 1bcf:K (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1034 1bcf:L (2.9) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1035 1bcf:L (2.9) BS03 MN 1.16.3.1 GO:0004322 ... P0ABD3 7664064
    1036 1bch:1 (2.0) BS01 CA ? N/A P19999 9677372
    1037 1bch:1 (2.0) BS02 CA ? N/A P19999 9677372
    1038 1bch:2 (2.0) BS01 CA ? N/A P19999 9677372
    1039 1bch:2 (2.0) BS02 CA ? N/A P19999 9677372
    1040 1bch:2 (2.0) BS03 CA ? N/A P19999 9677372
    1041 1bch:3 (2.0) BS01 CA ? N/A P19999 9677372
    1042 1bch:3 (2.0) BS02 CA ? N/A P19999 9677372
    1043 1bci:A (-1.00) BS01 CA 3.1.1.4
    3.1.1.5    		 GO:0005509 ... P47712 9665851
    1044 1bci:A (-1.00) BS02 CA 3.1.1.4
    3.1.1.5    		 GO:0005509 ... P47712 9665851
    1045 1bcj:1 (2.1) BS01 CA ? N/A P19999 9677372
    1046 1bcj:1 (2.1) BS02 CA ? N/A P19999 9677372
    1047 1bcj:1 (2.1) BS03 CA ? N/A P19999 9677372
    1048 1bcj:2 (2.1) BS01 CA ? N/A P19999 9677372
    1049 1bcj:2 (2.1) BS02 CA ? N/A P19999 9677372
    1050 1bcj:2 (2.1) BS03 CA ? N/A P19999 9677372
    1051 1bcj:3 (2.1) BS01 CA ? N/A P19999 9677372
    1052 1bcj:3 (2.1) BS02 CA ? N/A P19999 9677372
    1053 1bcj:3 (2.1) BS03 CA ? N/A P19999 9677372
    1054 1bcw:A (2.1) BS01 CA ? GO:0001786 ... P14668 9609693
    1055 1bcw:A (2.1) BS02 CA ? GO:0001786 ... P14668 9609693
    1056 1bcw:A (2.1) BS03 CA ? GO:0001786 ... P14668 9609693
    1057 1bcw:A (2.1) BS04 CA ? GO:0001786 ... P14668 9609693
    1058 1bcw:A (2.1) BS05 CA ? GO:0001786 ... P14668 9609693
    1059 1bcy:A (1.95) BS01 CA ? GO:0001786 ... P14668 9609693
    1060 1bcy:A (1.95) BS02 CA ? GO:0001786 ... P14668 9609693
    1061 1bcy:A (1.95) BS03 CA ? GO:0001786 ... P14668 9609693
    1062 1bcy:A (1.95) BS04 CA ? GO:0001786 ... P14668 9609693
    1063 1bcy:A (1.95) BS05 CA ? GO:0001786 ... P14668 9609693
    1064 1bcz:A (2.2) BS01 CA ? GO:0001786 ... P14668 9609693
    1065 1bcz:A (2.2) BS02 CA ? GO:0001786 ... P14668 9609693
    1066 1bcz:A (2.2) BS03 CA ? GO:0001786 ... P14668 9609693
    1067 1bcz:A (2.2) BS04 CA ? GO:0001786 ... P14668 9609693
    1068 1bcz:A (2.2) BS05 CA ? GO:0001786 ... P14668 9609693
    1069 1be6:A (2.15) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9789015
    1070 1be7:A (1.65) BS01 FE ? GO:0005506 ... P00268 N/A
    1071 1be8:A (2.2) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9789015
    1072 1bex:A (2.3) BS01 CU ? GO:0005507 ... P00282 10089343
    1073 1bex:A (2.3) BS02 CU ? GO:0005507 ... P00282 10089343
    1074 1bex:B (2.3) BS02 CU ? GO:0005507 ... P00282 10089343
    1075 1bex:B (2.3) BS03 CU ? GO:0005507 ... P00282 10089343
    1076 1bf2:A (2.0) BS01 CA 3.2.1.68 GO:0004553 ... P10342 9719642
    1077 1bf6:A (1.7) BS01 ZN 3.1.-.- GO:0008270 ... P45548 9548740
    1078 1bf6:A (1.7) BS02 ZN 3.1.-.- GO:0008270 ... P45548 9548740
    1079 1bf6:B (1.7) BS01 ZN 3.1.-.- GO:0008270 ... P45548 9548740
    1080 1bf6:B (1.7) BS02 ZN 3.1.-.- GO:0008270 ... P45548 9548740
    1081 1bfd:A (1.6) BS01 CA 4.1.1.7 GO:0000287 ... P20906 9665697
    1082 1bfd:A (1.6) BS02 MG 4.1.1.7 GO:0000287 ... P20906 9665697
    1083 1bfk:A (2.3) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9675126
    1084 1bfr:A (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1085 1bfr:A (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1086 1bfr:B (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1087 1bfr:B (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1088 1bfr:C (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1089 1bfr:C (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1090 1bfr:D (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1091 1bfr:D (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1092 1bfr:E (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1093 1bfr:E (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1094 1bfr:F (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1095 1bfr:F (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1096 1bfr:G (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1097 1bfr:G (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1098 1bfr:H (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1099 1bfr:H (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1100 1bfr:I (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1101 1bfr:I (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1102 1bfr:J (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1103 1bfr:J (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1104 1bfr:K (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1105 1bfr:K (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1106 1bfr:L (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1107 1bfr:L (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1108 1bfr:M (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1109 1bfr:M (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1110 1bfr:N (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1111 1bfr:N (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1112 1bfr:O (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1113 1bfr:O (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1114 1bfr:P (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1115 1bfr:P (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1116 1bfr:Q (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1117 1bfr:Q (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1118 1bfr:R (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1119 1bfr:R (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1120 1bfr:S (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1121 1bfr:S (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1122 1bfr:T (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1123 1bfr:T (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1124 1bfr:U (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1125 1bfr:U (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1126 1bfr:V (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1127 1bfr:V (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1128 1bfr:W (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1129 1bfr:W (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1130 1bfr:X (2.94) BS01 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1131 1bfr:X (2.94) BS02 MN 1.16.3.1 GO:0004322 ... P0ABD3 9867433
    1132 1bfu:A (2.2) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9675126
    1133 1bfv:L (2.1) BS01 ZN ? GO:0002250 ... P01631 9261086
    1134 1bfy:A (-1.00) BS01 FE 1.18.1.1 GO:0005506 ... P00268 N/A
    1135 1bg9:A (2.8) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    1136 1bg9:A (2.8) BS04 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    1137 1bg9:A (2.8) BS05 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    1138 1bgp:A (1.9) BS01 CA 1.11.1.7 GO:0004601 ... Q40069 9442067
    1139 1bgp:A (1.9) BS02 NA 1.11.1.7 GO:0004601 ... Q40069 9442067
    1140 1bh2:A (2.1) BS01 MG ? GO:0003924 ... P10824 9705312
    1141 1bh5:A (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    1142 1bh5:A (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    1143 1bh5:B (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    1144 1bh5:B (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    1145 1bh5:C (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    1146 1bh5:C (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    1147 1bh5:D (2.2) BS01 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    1148 1bh5:D (2.2) BS03 ZN 4.4.1.5 GO:0004462 ... Q04760 9705294
    1149 1bh6:A (1.75) BS01 CA 3.4.21.62 GO:0004252 ... P00781 9826175
    1150 1bho:1 (2.7) BS01 MG ? N/A P11215 9687375
    1151 1bho:2 (2.7) BS01 MG ? N/A P11215 9687375
    1152 1bi0:A (2.3) BS01 ZN ? GO:0003677 ... P0DJL7 9712865
    1153 1bi3:A (2.4) BS01 ZN ? GO:0003677 ... P0DJL7 9712865
    1154 1bi3:B (2.4) BS01 ZN ? GO:0003677 ... P0DJL7 9712865
    1155 1bic:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 8451242
    1156 1biq:A (2.05) BS01 FE2 1.17.4.1 GO:0004748 ... P69924 9692970
    1157 1biq:A (2.05) BS02 FE 1.17.4.1 GO:0004748 ... P69924 9692970
    1158 1biq:B (2.05) BS01 FE2 1.17.4.1 GO:0004748 ... P69924 9692970
    1159 1biq:B (2.05) BS02 FE2 1.17.4.1 GO:0004748 ... P69924 9692970
    1160 1bit:A (1.83) BS01 CA 3.4.21.4 GO:0004252 ... P35031 15299802
    1161 1biu:B (2.5) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 9689049
    1162 1biu:C (2.5) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 9689049
    1163 1biw:A (2.5) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9873489
    1164 1biw:A (2.5) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9873489
    1165 1biw:A (2.5) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    1166 1biw:A (2.5) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    1167 1biw:A (2.5) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    1168 1biw:B (2.5) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9873489
    1169 1biw:B (2.5) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9873489
    1170 1biw:B (2.5) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    1171 1biw:B (2.5) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    1172 1biw:B (2.5) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    1173 1biy:A (3.37) BS01 FE 3.4.21.- GO:0001503 ... O77698 10818344
    1174 1biy:A (3.37) BS02 FE 3.4.21.- GO:0001503 ... O77698 10818344
    1175 1bj3:A (2.6) BS01 CA ? GO:0005509 ... Q7LZ71 10339409
    1176 1bj3:B (2.6) BS01 CA ? GO:0005509 ... P23807 10339409
    1177 1bj6:A (-1.00) BS02 ZN ? GO:0003676 ... Q74084 9769215
    1178 1bj6:A (-1.00) BS03 ZN ? GO:0003676 ... Q74084 9769215
    1179 1bjf:A (2.4) BS01 CA ? GO:0003779 ... P61602 9886296
    1180 1bjf:A (2.4) BS02 CA ? GO:0003779 ... P61602 9886296
    1181 1bjf:A (2.4) BS03 CA ? GO:0003779 ... P61602 9886296
    1182 1bjf:B (2.4) BS01 CA ? GO:0003779 ... P61602 9886296
    1183 1bjf:B (2.4) BS02 CA ? GO:0003779 ... P61602 9886296
    1184 1bjf:B (2.4) BS03 CA ? GO:0003779 ... P61602 9886296
    1185 1bji:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9526556
    1186 1bjj:A (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1187 1bjj:A (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1188 1bjj:B (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1189 1bjj:B (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1190 1bjj:C (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1191 1bjj:D (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1192 1bjj:D (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1193 1bjj:E (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1194 1bjj:E (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1195 1bjj:F (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1196 1bjj:F (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    1197 1bjq:A (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    1198 1bjq:A (2.65) BS02 MN ? GO:0005537 ... P05045 10047489
    1199 1bjq:B (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    1200 1bjq:B (2.65) BS02 MN ? GO:0005537 ... P05045 10047489
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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