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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    119401 6cfj:1Y (2.8) BS02 MG ? GO:0003723 ... Q5SHP9 29410130
    119402 6cfj:1Y (2.8) BS03 ZN ? GO:0003723 ... Q5SHP9 29410130
    119403 6cfj:1Y (2.8) BS04 MG ? GO:0003723 ... Q5SHP9 29410130
    119404 6cfj:1b (2.8) BS02 MG ? GO:0003735 ... P80371 29410130
    119405 6cfj:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 29410130
    119406 6cfj:1e (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 29410130
    119407 6cfj:1f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 29410130
    119408 6cfj:1k (2.8) BS02 MG ? GO:0003735 ... P80376 29410130
    119409 6cfj:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 29410130
    119410 6cfj:1m (2.8) BS04 MG ? GO:0000049 ... P80377 29410130
    119411 6cfj:1n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    119412 6cfj:1n (2.8) BS03 MG ? GO:0003735 ... P0DOY6 29410130
    119413 6cfj:1t (2.8) BS02 MG ? GO:0003723 ... P80380 29410130
    119414 6cfj:20 (2.8) BS04 MG ? GO:0003735 ... P60493 29410130
    119415 6cfj:21 (2.8) BS03 MG ? GO:0003735 ... P60494 29410130
    119416 6cfj:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    119417 6cfj:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    119418 6cfj:25 (2.8) BS02 ZN ? GO:0003735 ... P80339 29410130
    119419 6cfj:25 (2.8) BS03 MG ? GO:0003735 ... P80339 29410130
    119420 6cfj:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 29410130
    119421 6cfj:27 (2.8) BS02 MG ? GO:0003735 ... P80340 29410130
    119422 6cfj:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    119423 6cfj:2D (2.8) BS03 MG ? GO:0002181 ... P60405 29410130
    119424 6cfj:2D (2.8) BS04 MG ? GO:0002181 ... P60405 29410130
    119425 6cfj:2D (2.8) BS05 MG ? GO:0002181 ... P60405 29410130
    119426 6cfj:2D (2.8) BS06 MG ? GO:0002181 ... P60405 29410130
    119427 6cfj:2D (2.8) BS07 MG ? GO:0002181 ... P60405 29410130
    119428 6cfj:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    119429 6cfj:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    119430 6cfj:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    119431 6cfj:2G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    119432 6cfj:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 29410130
    119433 6cfj:2T (2.8) BS03 MG ? GO:0003735 ... P60490 29410130
    119434 6cfj:2U (2.8) BS02 MG ? GO:0000027 ... P60491 29410130
    119435 6cfj:2U (2.8) BS03 MG ? GO:0000027 ... P60491 29410130
    119436 6cfj:2U (2.8) BS04 MG ? GO:0000027 ... P60491 29410130
    119437 6cfj:2V (2.8) BS02 MG ? GO:0003723 ... P60492 29410130
    119438 6cfj:2V (2.8) BS03 MG ? GO:0003723 ... P60492 29410130
    119439 6cfj:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    119440 6cfj:2X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 29410130
    119441 6cfj:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    119442 6cfj:2Z (2.8) BS03 MG ? GO:0003723 ... Q5SHZ1 29410130
    119443 6cfj:2d (2.8) BS03 MG ? GO:0003723 ... P80373 29410130
    119444 6cfj:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 29410130
    119445 6cfj:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 29410130
    119446 6cfj:2k (2.8) BS03 MG ? GO:0003735 ... P80376 29410130
    119447 6cfj:2l (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 29410130
    119448 6cfj:2n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    119449 6cfj:2q (2.8) BS02 MG ? GO:0003735 ... P0DOY7 29410130
    119450 6cfj:2q (2.8) BS03 MG ? GO:0003735 ... P0DOY7 29410130
    119451 6cfj:2r (2.8) BS02 MG ? GO:0003735 ... Q5SLQ0 29410130
    119452 6cfj:2t (2.8) BS02 MG ? GO:0003723 ... P80380 29410130
    119453 6cfk:10 (2.7) BS03 MG ? GO:0003735 ... P60493 29410130
    119454 6cfk:10 (2.7) BS04 MG ? GO:0003735 ... P60493 29410130
    119455 6cfk:11 (2.7) BS02 MG ? GO:0003735 ... P60494 29410130
    119456 6cfk:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    119457 6cfk:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 29410130
    119458 6cfk:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    119459 6cfk:15 (2.7) BS02 MG ? GO:0003735 ... P80339 29410130
    119460 6cfk:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 29410130
    119461 6cfk:16 (2.7) BS02 ZN ? GO:0000049 ... P35871 29410130
    119462 6cfk:17 (2.7) BS02 MG ? GO:0003735 ... P80340 29410130
    119463 6cfk:17 (2.7) BS03 MG ? GO:0003735 ... P80340 29410130
    119464 6cfk:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 29410130
    119465 6cfk:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 29410130
    119466 6cfk:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    119467 6cfk:1D (2.7) BS03 MG ? GO:0002181 ... P60405 29410130
    119468 6cfk:1D (2.7) BS04 MG ? GO:0002181 ... P60405 29410130
    119469 6cfk:1D (2.7) BS05 MG ? GO:0002181 ... P60405 29410130
    119470 6cfk:1D (2.7) BS06 MG ? GO:0002181 ... P60405 29410130
    119471 6cfk:1D (2.7) BS07 MG ? GO:0002181 ... P60405 29410130
    119472 6cfk:1D (2.7) BS08 MG ? GO:0002181 ... P60405 29410130
    119473 6cfk:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    119474 6cfk:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    119475 6cfk:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 29410130
    119476 6cfk:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    119477 6cfk:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    119478 6cfk:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    119479 6cfk:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 29410130
    119480 6cfk:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 29410130
    119481 6cfk:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 29410130
    119482 6cfk:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 29410130
    119483 6cfk:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 29410130
    119484 6cfk:1F (2.7) BS10 MG ? GO:0003735 ... Q5SHN9 29410130
    119485 6cfk:1F (2.7) BS11 MG ? GO:0003735 ... Q5SHN9 29410130
    119486 6cfk:1F (2.7) BS12 MG ? GO:0003735 ... Q5SHN9 29410130
    119487 6cfk:1F (2.7) BS13 MG ? GO:0003735 ... Q5SHN9 29410130
    119488 6cfk:1G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 29410130
    119489 6cfk:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    119490 6cfk:1N (2.7) BS02 MG ? GO:0003729 ... P60488 29410130
    119491 6cfk:1N (2.7) BS03 MG ? GO:0003729 ... P60488 29410130
    119492 6cfk:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 29410130
    119493 6cfk:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 29410130
    119494 6cfk:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 29410130
    119495 6cfk:1Q (2.7) BS03 MG ? GO:0000049 ... P60489 29410130
    119496 6cfk:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 29410130
    119497 6cfk:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 29410130
    119498 6cfk:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 29410130
    119499 6cfk:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 29410130
    119500 6cfk:1R (2.7) BS04 MG ? GO:0003735 ... Q9Z9H5 29410130
    119501 6cfk:1U (2.7) BS02 MG ? GO:0000027 ... P60491 29410130
    119502 6cfk:1U (2.7) BS03 MG ? GO:0000027 ... P60491 29410130
    119503 6cfk:1U (2.7) BS04 MG ? GO:0000027 ... P60491 29410130
    119504 6cfk:1U (2.7) BS05 MG ? GO:0000027 ... P60491 29410130
    119505 6cfk:1U (2.7) BS06 MG ? GO:0000027 ... P60491 29410130
    119506 6cfk:1U (2.7) BS07 MG ? GO:0000027 ... P60491 29410130
    119507 6cfk:1V (2.7) BS02 MG ? GO:0003723 ... P60492 29410130
    119508 6cfk:1V (2.7) BS03 MG ? GO:0003723 ... P60492 29410130
    119509 6cfk:1V (2.7) BS04 MG ? GO:0003723 ... P60492 29410130
    119510 6cfk:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    119511 6cfk:1Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    119512 6cfk:1b (2.7) BS02 MG ? GO:0003735 ... P80371 29410130
    119513 6cfk:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 29410130
    119514 6cfk:1k (2.7) BS02 MG ? GO:0003735 ... P80376 29410130
    119515 6cfk:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 29410130
    119516 6cfk:1m (2.7) BS02 MG ? GO:0000049 ... P80377 29410130
    119517 6cfk:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    119518 6cfk:1n (2.7) BS03 MG ? GO:0003735 ... P0DOY6 29410130
    119519 6cfk:1y (2.7) BS02 MG ? GO:0005515 ... P0AD49 29410130
    119520 6cfk:20 (2.7) BS03 MG ? GO:0003735 ... P60493 29410130
    119521 6cfk:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    119522 6cfk:25 (2.7) BS02 MG ? GO:0003735 ... P80339 29410130
    119523 6cfk:25 (2.7) BS03 ZN ? GO:0003735 ... P80339 29410130
    119524 6cfk:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 29410130
    119525 6cfk:27 (2.7) BS02 MG ? GO:0003735 ... P80340 29410130
    119526 6cfk:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    119527 6cfk:2D (2.7) BS03 MG ? GO:0002181 ... P60405 29410130
    119528 6cfk:2D (2.7) BS04 MG ? GO:0002181 ... P60405 29410130
    119529 6cfk:2D (2.7) BS05 MG ? GO:0002181 ... P60405 29410130
    119530 6cfk:2D (2.7) BS06 MG ? GO:0002181 ... P60405 29410130
    119531 6cfk:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    119532 6cfk:2E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    119533 6cfk:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    119534 6cfk:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    119535 6cfk:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    119536 6cfk:2G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 29410130
    119537 6cfk:2I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 29410130
    119538 6cfk:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 29410130
    119539 6cfk:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 29410130
    119540 6cfk:2U (2.7) BS02 MG ? GO:0000027 ... P60491 29410130
    119541 6cfk:2V (2.7) BS02 MG ? GO:0003723 ... P60492 29410130
    119542 6cfk:2V (2.7) BS03 MG ? GO:0003723 ... P60492 29410130
    119543 6cfk:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    119544 6cfk:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    119545 6cfk:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 29410130
    119546 6cfk:2j (2.7) BS02 MG ? GO:0000049 ... Q5SHN7 29410130
    119547 6cfk:2k (2.7) BS02 MG ? GO:0003735 ... P80376 29410130
    119548 6cfk:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    119549 6cfk:2t (2.7) BS02 MG ? GO:0003723 ... P80380 29410130
    119550 6cfl:10 (2.6) BS03 MG ? GO:0003735 ... P60493 29410130
    119551 6cfl:10 (2.6) BS04 MG ? GO:0003735 ... P60493 29410130
    119552 6cfl:10 (2.6) BS05 MG ? GO:0003735 ... P60493 29410130
    119553 6cfl:11 (2.6) BS02 MG ? GO:0003735 ... P60494 29410130
    119554 6cfl:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    119555 6cfl:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 29410130
    119556 6cfl:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    119557 6cfl:15 (2.6) BS02 MG ? GO:0003735 ... P80339 29410130
    119558 6cfl:15 (2.6) BS03 ZN ? GO:0003735 ... P80339 29410130
    119559 6cfl:16 (2.6) BS02 ZN ? GO:0000049 ... P35871 29410130
    119560 6cfl:17 (2.6) BS02 MG ? GO:0003735 ... P80340 29410130
    119561 6cfl:17 (2.6) BS03 MG ? GO:0003735 ... P80340 29410130
    119562 6cfl:17 (2.6) BS04 MG ? GO:0003735 ... P80340 29410130
    119563 6cfl:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 29410130
    119564 6cfl:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 29410130
    119565 6cfl:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    119566 6cfl:1D (2.6) BS02 MG ? GO:0002181 ... P60405 29410130
    119567 6cfl:1D (2.6) BS03 MG ? GO:0002181 ... P60405 29410130
    119568 6cfl:1D (2.6) BS04 MG ? GO:0002181 ... P60405 29410130
    119569 6cfl:1D (2.6) BS05 MG ? GO:0002181 ... P60405 29410130
    119570 6cfl:1D (2.6) BS06 MG ? GO:0002181 ... P60405 29410130
    119571 6cfl:1D (2.6) BS07 MG ? GO:0002181 ... P60405 29410130
    119572 6cfl:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    119573 6cfl:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    119574 6cfl:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 29410130
    119575 6cfl:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    119576 6cfl:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    119577 6cfl:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    119578 6cfl:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 29410130
    119579 6cfl:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 29410130
    119580 6cfl:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 29410130
    119581 6cfl:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 29410130
    119582 6cfl:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 29410130
    119583 6cfl:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 29410130
    119584 6cfl:1F (2.6) BS11 MG ? GO:0003735 ... Q5SHN9 29410130
    119585 6cfl:1F (2.6) BS12 MG ? GO:0003735 ... Q5SHN9 29410130
    119586 6cfl:1F (2.6) BS13 MG ? GO:0003735 ... Q5SHN9 29410130
    119587 6cfl:1G (2.6) BS03 MG ? GO:0000049 ... Q5SHQ0 29410130
    119588 6cfl:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    119589 6cfl:1N (2.6) BS02 MG ? GO:0003729 ... P60488 29410130
    119590 6cfl:1N (2.6) BS03 MG ? GO:0003729 ... P60488 29410130
    119591 6cfl:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 29410130
    119592 6cfl:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 29410130
    119593 6cfl:1Q (2.6) BS03 MG ? GO:0000049 ... P60489 29410130
    119594 6cfl:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 29410130
    119595 6cfl:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 29410130
    119596 6cfl:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 29410130
    119597 6cfl:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 29410130
    119598 6cfl:1U (2.6) BS02 MG ? GO:0000027 ... P60491 29410130
    119599 6cfl:1U (2.6) BS03 MG ? GO:0000027 ... P60491 29410130
    119600 6cfl:1U (2.6) BS04 MG ? GO:0000027 ... P60491 29410130
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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